aboutsummaryrefslogtreecommitdiff
path: root/gnu/packages
diff options
context:
space:
mode:
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/admin.scm4
-rw-r--r--gnu/packages/bioinformatics.scm37
-rw-r--r--gnu/packages/code.scm14
-rw-r--r--gnu/packages/conky.scm2
-rw-r--r--gnu/packages/debug.scm14
-rw-r--r--gnu/packages/emacs.scm2
-rw-r--r--gnu/packages/engineering.scm14
7 files changed, 38 insertions, 49 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 4b14e0ef32..4197f63983 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -905,9 +905,7 @@ commands and their arguments.")
(man8 (string-append man "/man8")))
(define (copy-man-page target)
(lambda (file)
- (copy-file file
- (string-append target "/"
- (basename file)))))
+ (install-file file target)))
(mkdir-p man5) (mkdir man8)
(for-each (copy-man-page man5)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 239b94b6c4..3387a2571a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -151,11 +151,9 @@ and several other tools.")
(bin (string-append out "/bin"))
(man (string-append out "/share/man/man1")))
(mkdir-p bin)
- (copy-file "aragorn"
- (string-append bin "/aragorn"))
+ (install-file "aragorn" bin)
(mkdir-p man)
- (copy-file "aragorn.1"
- (string-append man "/aragorn.1")))
+ (install-file "aragorn.1" man))
#t)))))
(home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN")
(synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences")
@@ -1700,15 +1698,16 @@ gene predictor designed to work with assembled, aligned RNA-seq transcripts.")
(replace
'install
(lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin")))
(copy-recursively "src" (string-append out "/src"))
- (mkdir (string-append out "/bin"))
+ (mkdir bin)
;; Add "src" directory to module lookup path.
(substitute* "couger"
(("from argparse")
(string-append "import sys\nsys.path.append(\""
out "\")\nfrom argparse")))
- (copy-file "couger" (string-append out "/bin/couger")))
+ (install-file "couger" bin))
#t))
(add-after
'install 'wrap-program
@@ -2231,8 +2230,7 @@ quantitative phenotypes.")
(let ((target (string-append (assoc-ref outputs "out")
"/bin")))
(mkdir-p target)
- (copy-file "edirect.pl"
- (string-append target "/edirect.pl"))
+ (install-file "edirect.pl" target)
#t)))
(add-after
'install 'wrap-program
@@ -2378,10 +2376,8 @@ ChIP-Seq, and analysis of metagenomic data.")
(let ((bin (string-append (assoc-ref outputs "out")
"/bin")))
(mkdir-p bin)
- (copy-file "scripts/convertToEBD.py"
- (string-append bin "/convertToEBD.py"))
- (copy-file "bin/ExpressBetaDiversity"
- (string-append bin "/ExpressBetaDiversity"))
+ (install-file "scripts/convertToEBD.py" bin)
+ (install-file "bin/ExpressBetaDiversity" bin)
#t))))))
(inputs
`(("python" ,python-2)))
@@ -2440,10 +2436,8 @@ similarity of community members.")
(let ((bin (string-append (assoc-ref outputs "out")
"/bin")))
(mkdir-p bin)
- (copy-file "FastTree"
- (string-append bin "/FastTree"))
- (copy-file "FastTreeMP"
- (string-append bin "/FastTreeMP"))
+ (install-file "FastTree" bin)
+ (install-file "FastTreeMP" bin)
#t))))))
(home-page "http://www.microbesonline.org/fasttree")
(synopsis "Infers approximately-maximum-likelihood phylogenetic trees")
@@ -4101,11 +4095,9 @@ phylogenies.")
(mkdir-p bin)
(mkdir-p perl)
(for-each (lambda (file)
- (copy-file file
- (string-append bin (basename file))))
+ (install-file file bin))
(find-files "." "rsem-.*"))
- (copy-file "rsem_perl_utils.pm"
- (string-append perl "/rsem_perl_utils.pm")))
+ (install-file "rsem_perl_utils.pm" perl))
#t))
(add-after
'install 'wrap-program
@@ -4336,8 +4328,7 @@ viewer.")
(let ((bin (string-append
(assoc-ref outputs "out") "/bin")))
(mkdir-p bin)
- (copy-file "samtools"
- (string-append bin "/samtools"))
+ (install-file "samtools" bin)
#t)))
(delete 'patch-tests)
(delete 'configure))))))))
diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm
index f91fdab153..3aaa754c09 100644
--- a/gnu/packages/code.scm
+++ b/gnu/packages/code.scm
@@ -271,13 +271,13 @@ features that are not supported by the standard @code{stdio} implementation.")
(replace
'install
(lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (mkdir-p (string-append out "/lib"))
- (mkdir (string-append out "/include"))
- (copy-file "src/withershins.hpp"
- (string-append out "/include/withershins.hpp"))
- (copy-file "src/libwithershins.a"
- (string-append out "/lib/libwithershins.a")))
+ (let* ((out (assoc-ref outputs "out"))
+ (include (string-append out "/include"))
+ (lib (string-append out "/lib")))
+ (mkdir-p include)
+ (install-file "src/withershins.hpp" include)
+ (mkdir-p lib)
+ (install-file "src/libwithershins.a" lib))
#t)))))
(home-page "https://github.com/cameronwhite/withershins")
(inputs
diff --git a/gnu/packages/conky.scm b/gnu/packages/conky.scm
index 9c933a4bc0..1f5b38eef4 100644
--- a/gnu/packages/conky.scm
+++ b/gnu/packages/conky.scm
@@ -64,7 +64,7 @@
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
(mkdir-p bin)
- (copy-file "src/conky" (string-append bin "/conky"))))
+ (install-file "src/conky" bin)))
%standard-phases))))
(inputs
`(("freetype" ,freetype)
diff --git a/gnu/packages/debug.scm b/gnu/packages/debug.scm
index 6278f661ef..27193c8bba 100644
--- a/gnu/packages/debug.scm
+++ b/gnu/packages/debug.scm
@@ -68,10 +68,10 @@
(mkdir-p bin)
(mkdir-p doc)
(for-each (lambda (h)
- (copy-file h (string-append doc "/" (basename h))))
+ (install-file h doc))
`("License.txt" ,@(find-files "www" ".*\\.html")))
(for-each (lambda (b)
- (copy-file b (string-append bin "/" b)))
+ (install-file b bin))
`("delta" "multidelta" "topformflat")))))
(alist-delete 'configure %standard-phases))))
(home-page "http://delta.tigris.org/")
@@ -212,13 +212,13 @@ tools that process C/C++ code.")
(system* "tar" "xf"
(assoc-ref inputs "afl-src")))
(error "tar failed to unpack afl-src"))
- (copy-file (string-append patch-dir
- "/afl-qemu-cpu-inl.h")
- "./afl-qemu-cpu-inl.h")
+ (install-file (string-append patch-dir
+ "/afl-qemu-cpu-inl.h")
+ ".")
(copy-file (string-append afl-dir "/config.h")
"./afl-config.h")
- (copy-file (string-append afl-dir "/types.h")
- "./types.h")
+ (install-file (string-append afl-dir "/types.h")
+ ".")
(substitute* "afl-qemu-cpu-inl.h"
(("\\.\\./\\.\\./config.h") "afl-config.h"))
(substitute* (string-append patch-dir
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index 3db5527e60..c6e62acb7a 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -2101,7 +2101,7 @@ to a key in your preferred mode.")
;; keep only file of interest
'(begin
(for-each delete-file '("dot-emacs.el" "Makefile"))
- (copy-file "6.945-config/mit-scheme-doc.el" "mit-scheme-doc.el")
+ (install-file "6.945-config/mit-scheme-doc.el" ".")
(delete-file-recursively "6.945-config")))
(file-name (string-append name "-" version ".tar.bz2"))
(method url-fetch)
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 23446bafa8..dd56af99da 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -96,13 +96,13 @@
(assoc-ref inputs "boost")))))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (mkdir-p (string-append out "/bin"))
- (mkdir-p (string-append out "/share/librecad"))
- (copy-file "unix/librecad"
- (string-append out "/bin/librecad"))
- (copy-recursively "unix/resources"
- (string-append out "/share/librecad"))))))))
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (share (string-append out "/share/librecad")))
+ (mkdir-p bin)
+ (install-file "unix/librecad" bin)
+ (mkdir-p share)
+ (copy-recursively "unix/resources" share)))))))
(inputs
`(("boost" ,boost)
("muparser" ,muparser)
generated by cgit v1.2.3 (git 2.25.4) at 2024-11-02 06:34:31 +0000