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-rw-r--r--gnu/packages/algebra.scm36
-rw-r--r--gnu/packages/antivirus.scm156
-rw-r--r--gnu/packages/audio.scm122
-rw-r--r--gnu/packages/bioinformatics.scm111
-rw-r--r--gnu/packages/bootloaders.scm6
-rw-r--r--gnu/packages/cran.scm24
-rw-r--r--gnu/packages/emacs.scm6
-rw-r--r--gnu/packages/game-development.scm4
-rw-r--r--gnu/packages/games.scm4
-rw-r--r--gnu/packages/gl.scm3
-rw-r--r--gnu/packages/guile.scm6
-rw-r--r--gnu/packages/image.scm4
-rw-r--r--gnu/packages/java.scm145
-rw-r--r--gnu/packages/linux.scm16
-rw-r--r--gnu/packages/lisp.scm276
-rw-r--r--gnu/packages/llvm.scm35
-rw-r--r--gnu/packages/machine-learning.scm5
-rw-r--r--gnu/packages/man.scm14
-rw-r--r--gnu/packages/maths.scm127
-rw-r--r--gnu/packages/mpi.scm42
-rw-r--r--gnu/packages/multiprecision.scm66
-rw-r--r--gnu/packages/ocaml.scm2328
-rw-r--r--gnu/packages/package-management.scm7
-rw-r--r--gnu/packages/patches/clamav-config-llvm-libs.patch14
-rw-r--r--gnu/packages/patches/clamav-system-tomsfastmath.patch102
-rw-r--r--gnu/packages/patches/emacs-realgud-fix-configure-ac.patch27
-rw-r--r--gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch246
-rw-r--r--gnu/packages/patches/tomsfastmath-constness.patch76
-rw-r--r--gnu/packages/python.scm73
-rw-r--r--gnu/packages/simulation.scm490
-rw-r--r--gnu/packages/statistics.scm8
-rw-r--r--gnu/packages/version-control.scm52
-rw-r--r--gnu/packages/web.scm4
33 files changed, 3618 insertions, 1017 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 45a3da1713..eea23bd621 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2013, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016, 2017, 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org>
@@ -179,7 +179,7 @@ PARI is also available as a C library to allow for faster computations.")
(define-public gp2c
(package
(name "gp2c")
- (version "0.0.11")
+ (version "0.0.11pl1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -187,7 +187,7 @@ PARI is also available as a C library to allow for faster computations.")
version ".tar.gz"))
(sha256
(base32
- "1z69xj2dpd8yyi8108rz26c50xpv0k2j8qnk0bzy1c5lw3pd1adm"))))
+ "1c6f6vmncw032kfzrfyr8bynw6yd3faxpy2285r009fmr0zxfs5s"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl)))
(inputs `(("pari-gp" ,pari-gp)))
@@ -210,6 +210,36 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.")
(license license:gpl2)
(home-page "https://pari.math.u-bordeaux.fr/")))
+(define-public cmh
+ (package
+ (name "cmh")
+ (version "1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://gforge.inria.fr/frs/download.php/33497/cmh-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1a28xr9bs0igms0ik99x0w8lnb0jyfcmvyi26pbyh9ggcdivd33p"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("gmp" ,gmp)
+ ("mpfr" ,mpfr)
+ ("mpc" ,mpc)
+ ("mpfrcx" ,mpfrcx)
+ ("fplll" ,fplll)
+ ("pari-gp" ,pari-gp)))
+ (synopsis "Igusa class polynomial computations")
+ (description
+ "The CMH software computes Igusa (genus 2) class polynomials, which
+parameterize the CM points in the moduli space of 2-dimensional abelian
+varieties, i.e. Jacobians of hyperelliptic curves.
+It can also be used to compute theta constants at arbitrary
+precision.")
+ (license license:gpl3+)
+ (home-page "http://cmh.gforge.inria.fr/")))
+
(define-public giac-xcas
(package
(name "giac-xcas")
diff --git a/gnu/packages/antivirus.scm b/gnu/packages/antivirus.scm
new file mode 100644
index 0000000000..95749761bd
--- /dev/null
+++ b/gnu/packages/antivirus.scm
@@ -0,0 +1,156 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2018 Christopher Baines <mail@cbaines.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages antivirus)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix utils)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages autotools)
+ #:use-module (gnu packages bison)
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
+ #:use-module (gnu packages cyrus-sasl)
+ #:use-module (gnu packages flex)
+ #:use-module (gnu packages llvm)
+ #:use-module (gnu packages multiprecision)
+ #:use-module (gnu packages ncurses)
+ #:use-module (gnu packages pcre)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages tls)
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages xml))
+
+(define-public clamav
+ (package
+ (name "clamav")
+ (version "0.100.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://www.clamav.net/downloads/production/"
+ "clamav-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1mkd41sxbjkfjinpx5b9kb85q529gj2s3d0klysssqhysh64ybja"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (for-each delete-file-recursively
+ '("win32" ;unnecessary
+ "libclamav/c++/llvm" ;use system llvm
+ "libclamunrar")))) ;non-free license
+ (patches
+ (search-patches "clamav-system-tomsfastmath.patch"
+ "clamav-config-llvm-libs.patch"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("bison" ,bison)
+ ("check" ,check) ;for tests
+ ("flex" ,flex)
+ ("pkg-config" ,pkg-config)
+ ;; The tomsfastmath patch touches configure.ac and Makefile.am
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("libtool" ,libtool)))
+ (inputs
+ `(("bzip2" ,bzip2)
+ ("libcurl" ,curl)
+ ("libjson" ,json-c)
+ ("libltdl" ,libltdl)
+ ("libmspack" ,libmspack)
+ ("llvm" ,llvm-3.6) ;requires <3.7, for JIT/verifier
+ ("ncurses" ,ncurses)
+ ("openssl" ,libressl)
+ ("pcre" ,pcre "bin") ;for pcre-config
+ ("sasl" ,cyrus-sasl) ;for linking curl with libtool
+ ("tomsfastmath" ,tomsfastmath)
+ ("xml" ,libxml2)
+ ("zlib" ,zlib)))
+ (arguments
+ `(#:configure-flags
+ (let-syntax ((with (syntax-rules ()
+ ((_ name)
+ (string-append "--with-" name "="
+ (assoc-ref %build-inputs name))))))
+ (list "--disable-unrar"
+ "--enable-llvm"
+ "--with-system-llvm"
+ "--with-system-libmspack"
+ "--without-included-ltdl"
+ (with "xml")
+ (with "openssl")
+ (with "libjson")
+ (with "pcre")
+ (with "zlib")
+ (with "libcurl")
+ ;; For sanity, specifying --enable-* flags turns
+ ;; "support unavailable" warnings into errors.
+ "--enable-bzip2"
+ "--enable-check"
+ "--sysconfdir=/etc/clamav"
+ ;; Default database directory needs to be writeable
+ "--with-dbdir=/var/db/clamav"))
+ ;; install sample .conf files to %output/etc rather than /etc/clamav
+ #:make-flags (list (string-append "sysconfdir=" %output "/etc"))
+ #:phases (modify-phases %standard-phases
+ (add-after 'unpack 'reconf
+ (lambda _ (zero? (system* "autoreconf" "-vfi"))))
+ (add-before 'configure 'patch-llvm-config
+ (lambda _
+ (substitute* '("libclamav/c++/detect.cpp"
+ "libclamav/c++/ClamBCRTChecks.cpp"
+ "libclamav/c++/bytecode2llvm.cpp")
+ (("llvm/Config/config.h") "llvm/Config/llvm-config.h"))
+ ;; `llvm-config --libfiles` inappropriately lists lib*.a
+ ;; libraries, rather than the lib*.so's that our llvm
+ ;; contains. They're used only for listing extra build
+ ;; dependencies, so ignore them until that's fixed.
+ (substitute* "libclamav/c++/Makefile.in"
+ (("@LLVMCONFIG_LIBFILES@") ""))
+ #t))
+ (add-before 'check 'skip-clamd-tests
+ ;; XXX: The check?_clamd tests fail inside the build
+ ;; chroot, but pass outside.
+ (lambda _
+ (substitute* "unit_tests/Makefile"
+ (("check2_clamd.sh.*check4_clamd.sh") ""))
+ #t)))))
+ (home-page "https://www.clamav.net")
+ (synopsis "Antivirus engine")
+ (description
+ "Clam AntiVirus is an anti-virus toolkit, designed especially for e-mail
+scanning on mail gateways. It provides a number of utilities including a
+flexible and scalable multi-threaded daemon, a command line scanner, and
+advanced tool for automatic database updates. The core of the package is an
+anti-virus engine available in the form of a shared library.")
+ (license (list license:gpl2+ ;ClamAV itself
+ license:lgpl2.1 ;libclamav/mspack.[ch]
+ license:public-domain ;libclamav/7z/*, libclamav/rijndael.[ch], etc...
+ (package-license bzip2) ;modified bzip2 source in libclamav/nsis
+ license:bsd-2 ;several files in libclamav
+ license:bsd-3 ;libclamav/{regex,qsort.c,swf.[ch]
+ license:ncsa ;libclamav/c++/PointerTracking.cpp
+ license:zlib ;libclamav/inf*.h
+ license:x11 ;libclamav/lzw
+ (license:non-copyleft "libclamav/strlcat.c") ;"OpenBSD" license
+ license:asl2.0 ;libclamav/yara*
+ license:expat)))) ;shared/getopt.[ch]
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index 2e1b0467c3..7883834d18 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -15,6 +15,7 @@
;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2018 Brett Gilio <brettg@posteo.net>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2018 Thorsten Wilms <t_w_@freenet.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -427,6 +428,46 @@ and editing digital audio. It features digital effects and spectrum analysis
tools.")
(license license:gpl2+)))
+(define-public autotalent
+ (package
+ (name "autotalent")
+ (version "0.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://tombaran.info/autotalent-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1n04qm66f14195ly6gsy3ra7v2j7zad5n19d8dwfmh0qs6h9hphh"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; no check target
+ #:phases
+ (modify-phases %standard-phases
+ ;; no configure script
+ (delete 'configure)
+ (add-before 'install 'prepare-target-directory
+ (lambda* (#:key outputs #:allow-other-keys)
+ (mkdir-p (string-append (assoc-ref outputs "out") "/lib/ladspa"))
+ #t))
+ (add-after 'unpack 'override-target-directory
+ (lambda* (#:key outputs #:allow-other-keys)
+ (substitute* "Makefile"
+ (("/usr/lib64/ladspa")
+ (string-append (assoc-ref outputs "out") "/lib/ladspa")))
+ #t)))))
+ (inputs
+ `(("ladspa" ,ladspa)))
+ (home-page "http://tombaran.info/autotalent.html")
+ (synopsis "Pitch-correction LADSPA audio plugin")
+ (description
+ "Autotalent is a LADSPA plugin for real-time pitch-correction. Among its
+controls are allowable notes, strength of correction, LFO for vibrato and
+formant warp.")
+ ;; All code except the FFT routine is licensed under GPLv2+.
+ ;; The FFT routine is under BSD-3.
+ (license (list license:gpl2+))))
+
(define-public azr3
(package
(name "azr3")
@@ -514,6 +555,47 @@ tools (analyzer, mono/stereo tools, crossovers).")
;; The plugins are released under LGPLv2.1+
(license (list license:lgpl2.1+ license:gpl2+))))
+(define-public caps-plugins-lv2
+ (package
+ (name "caps-plugins-lv2")
+ (version "0.9.24") ; version that has been ported.
+ (source
+ (origin
+ ;; The Github project hasn't tagged a release.
+ (method git-fetch)
+ (uri (git-reference
+ ;; Actually https://github.com/moddevices/caps-lv2.git, but it's
+ ;; missing fixes for newer glibc, so using the origin of a pull
+ ;; request regarding this issue:
+ (url "https://github.com/jujudusud/caps-lv2.git")
+ (commit "9c9478b7fbd8f9714f552ebe2a6866398b0babfb")))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1idfnazin3cca41zw1a8vwgnxjnkrap7bxxjamjqvgpmvydgcam1"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; no check target
+ #:phases
+ (modify-phases %standard-phases
+ ;; no configure script
+ (delete 'configure)
+ (add-after 'unpack 'override-target-directory
+ (lambda* (#:key outputs #:allow-other-keys)
+ (substitute* (find-files "plugins" "Makefile")
+ (("/usr/local")(assoc-ref outputs "out")))
+ #t)))))
+ (inputs
+ `(("lv2" ,lv2)))
+ ;; home-page of the original LADSPA version: http://quitte.de/dsp/caps.html
+ (home-page "https://github.com/moddevices/caps-lv2")
+ (synopsis "LV2 port of the CAPS audio plugin colection")
+ (description
+ "LV2 port of CAPS, a collection of audio plugins comprising basic virtual
+guitar amplification and a small range of classic effects, signal processors and
+generators of mostly elementary and occasionally exotic nature.")
+ (license license:gpl3+)))
+
(define-public espeak
(package
(name "espeak")
@@ -1045,7 +1127,7 @@ follower.")
(define-public fluidsynth
(package
(name "fluidsynth")
- (version "2.0.1")
+ (version "2.0.2")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1054,7 +1136,7 @@ follower.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "1mqyym5qkh8xd1rqj3yhfxbw5dxjcrljb6nkfqzvcarlv4h6rjn7"))))
+ "02vs5sfsyh1dl7wlcvgs4w3x0qcmsl7vi000qgp99ynwh3wjb274"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; no check target
@@ -1193,7 +1275,7 @@ PS, and DAB+.")
`(list (string-append "prefix=" (assoc-ref %outputs "out"))
"world"))))
(native-inputs
- `(("llvm" ,llvm-3.8-with-rtti)
+ `(("llvm" ,llvm-3.8)
("which" ,which)
("xxd" ,xxd)
("ctags" ,emacs-minimal) ; for ctags
@@ -3522,3 +3604,37 @@ using ALSA, MPD, PulseAudio, or a FIFO buffer as its input.")
(synopsis "Pro-quality GM soundfont")
(description "Fluid-3 is Frank Wen's pro-quality GM soundfont.")
(license license:expat))))
+
+(define-public libfdk
+ (let ((commit "2326faaf8f2cdf2c3a9108ccdaf1d7551aec543e")
+ (revision "0"))
+ (package
+ (name "libfdk")
+ ;; The latest upstream revision, with many bug fixes.
+ (version (git-version "0.1.6" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mstorsjo/fdk-aac")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0yy6ndd9d61bwl283vl1r5kva2a4acc0f4r9g0sza156f2abr9ws"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("libtool" ,libtool)))
+ (home-page "https://github.com/mstorsjo/fdk-aac")
+ (synopsis "Fraunhofer FDK AAC library")
+ (description "FDK is a library for encoding and decoding Advanced Audio
+Coding (AAC) format audio, developed by Fraunhofer IIS, and included as part of
+Android. It supports several Audio Object Types including MPEG-2 and MPEG-4 AAC
+LC, HE-AAC (AAC LC + SBR), HE-AACv2 (LC + SBR + PS) as well AAC-LD (low delay)
+and AAC-ELD (enhanced low delay) for real-time communication. The encoding
+library supports sample rates up to 96 kHz and up to eight channels (7.1
+surround).")
+ (license (license:fsf-free "https://github.com/mstorsjo/fdk-aac/blob/master/NOTICE"
+ "https://www.gnu.org/licenses/license-list.html#fdk")))))
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 28b6cd318b..b913d5647d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7380,13 +7380,13 @@ ID and species. It is used by functions in the GenomeInfoDb package.")
(define-public r-genomeinfodb
(package
(name "r-genomeinfodb")
- (version "1.18.0")
+ (version "1.18.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomeInfoDb" version))
(sha256
(base32
- "1xqpgngd8by0yn627v9kz26a03v5a1lhcfwlnx2i0ivplk9bd40s"))))
+ "049pyzr8iszv3g7wdqf3pz7vg7bzd450c20ln6fgw4g5xnkkr10s"))))
(properties
`((upstream-name . "GenomeInfoDb")))
(build-system r-build-system)
@@ -9748,14 +9748,14 @@ structure (pcaRes) to provide a common interface to the PCA results.")
(define-public r-msnbase
(package
(name "r-msnbase")
- (version "2.8.0")
+ (version "2.8.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MSnbase" version))
(sha256
(base32
- "0nnlydpklmv9kwlk3gkjgabx7l6y4gav3imq98w8wskb1fhm50c0"))))
+ "0y658anh06vnvbkfs7r8q40gqgyqr2r8kj7jlpnp33fy1lvp1nv7"))))
(properties `((upstream-name . "MSnbase")))
(build-system r-build-system)
(propagated-inputs
@@ -10223,14 +10223,14 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2):
(define-public r-ensembldb
(package
(name "r-ensembldb")
- (version "2.6.1")
+ (version "2.6.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ensembldb" version))
(sha256
(base32
- "1js05dcv1dj4g2vj7lzlg0rgjcjlk2irdr9rxqpwxmivm8nbvf36"))))
+ "0hdz1f34v7sas2v4225icwl3wd4sf17ykpd5dkbx1hc7wcy4w3np"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
@@ -11166,7 +11166,7 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
(define-public sambamba
(package
(name "sambamba")
- (version "0.6.7-10-g223fa20")
+ (version "0.6.8")
(source
(origin
(method git-fetch)
@@ -11176,7 +11176,7 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "1zb9hrxglxqh13ava9wwri30cvf85hjnbn8ccnr8l60a3k5avczn"))))
+ "0k0cz3qcv98p6cq09zlbgnjsggxcqbcmzxg5zikgcgbr2nfq4lry"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there is no test target
@@ -11187,9 +11187,10 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
(add-after 'unpack 'fix-ldc-version
(lambda _
(substitute* "gen_ldc_version_info.py"
- (("/usr/bin/env.*") (which "python")))
+ (("/usr/bin/env.*") (which "python3")))
(substitute* "Makefile"
- (("\\$\\(shell which ldmd2\\)") (which "ldmd2")))
+ ;; We use ldc2 instead of ldmd2 to compile sambamba.
+ (("\\$\\(shell which ldmd2\\)") (which "ldc2")))
#t))
(add-after 'unpack 'place-biod-and-undead
(lambda* (#:key inputs #:allow-other-keys)
@@ -11201,21 +11202,21 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
(substitute* "Makefile"
(("htslib/libhts.a lz4/lib/liblz4.a")
"-L-lhts -L-llz4")
- ((" htslib-static lz4-static") ""))
+ ((" lz4-static htslib-static") ""))
#t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")))
(mkdir-p bin)
- (install-file "build/sambamba" bin)
+ (install-file "bin/sambamba" bin)
#t))))))
(native-inputs
`(("ldc" ,ldc)
("rdmd" ,rdmd)
- ("python" ,python2-minimal)
+ ("python" ,python-minimal)
("biod"
- ,(let ((commit "c778e4f2d8bacea7499283ce39f5577b232732c6"))
+ ,(let ((commit "4f1a7d2fb7ef3dfe962aa357d672f354ebfbe42e"))
(origin
(method git-fetch)
(uri (git-reference
@@ -11226,20 +11227,20 @@ droplet sequencing. It has been particularly tailored for Drop-seq.")
"-checkout"))
(sha256
(base32
- "1z90562hg47i63gx042wb3ak2vqjg5z7hwgn9bp2pdxfg3nxrw37")))))
+ "1k5pdjv1qvi0a3rwd1sfq6zbj37l86i7bf710m4c0y6737lxj426")))))
("undead"
- ,(let ((commit "92803d25c88657e945511f0976a0c79d8da46e89"))
+ ,(let ((commit "9be93876982b5f14fcca60832563b3cd767dd84d"))
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/dlang/undeaD.git")
+ (url "https://github.com/biod/undeaD.git")
(commit commit)))
(file-name (string-append "undead-"
(string-take commit 9)
"-checkout"))
(sha256
(base32
- "0vq6n81vzqvgphjw54lz2isc1j8lcxwjdbrhqz1h5gwrvw9w5138")))))))
+ "1xfarj0nqlmi5jd1vmcmm7pabzaf9hxyvk6hp0d6jslb5k9r8r3d")))))))
(inputs
`(("lz4" ,lz4)
("htslib" ,htslib-for-sambamba)))
@@ -14376,3 +14377,77 @@ both read length (longer is better) and read identity (higher is better) when
choosing which reads pass the filter.")
(license (list license:gpl3 ;filtlong
license:asl2.0))))) ;histogram.py
+
+(define-public nanopolish
+ ;; The recommended way to install is to clone the git repository
+ ;; <https://github.com/jts/nanopolish#installing-a-particular-release>.
+ ;; Also, the differences between release and current version seem to be
+ ;; significant.
+ (let ((commit "50e8b5cc62f9b46f5445f5c5e8c5ab7263ea6d9d")
+ (revision "1"))
+ (package
+ (name "nanopolish")
+ (version (git-version "0.10.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jts/nanopolish.git")
+ (commit commit)
+ (recursive? #t)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "09j5gz57yr9i34a27vbl72i4g8syv2zzgmsfyjq02yshmnrvkjs6"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags
+ `("HDF5=noinstall" "EIGEN=noinstall" "HTS=noinstall" "CC=gcc")
+ #:tests? #f ; no check target
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'find-eigen
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "CPATH"
+ (string-append (assoc-ref inputs "eigen")
+ "/include/eigen3"))
+ #t))
+ (delete 'configure)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (scripts (string-append out "/share/nanopolish/scripts")))
+
+ (install-file "nanopolish" bin)
+ (for-each (lambda (file) (install-file file scripts))
+ (find-files "scripts" ".*"))
+ #t)))
+ (add-after 'install 'wrap-programs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (for-each (lambda (file)
+ (wrap-program file `("PYTHONPATH" ":" prefix (,path))))
+ (find-files "/share/nanopolish/scripts" "\\.py"))
+ (for-each (lambda (file)
+ (wrap-program file `("PERL5LIB" ":" prefix (,path))))
+ (find-files "/share/nanopolish/scripts" "\\.pl"))
+ #t)))))
+ (inputs
+ `(("eigen" ,eigen)
+ ("hdf5" ,hdf5)
+ ("htslib" ,htslib)
+ ("perl" ,perl)
+ ("python" ,python)
+ ("python-biopython" ,python-biopython)
+ ("python-numpy" ,python-numpy)
+ ("python-pysam" ,python-pysam)
+ ("python-scikit-learn" , python-scikit-learn)
+ ("python-scipy" ,python-scipy)
+ ("zlib" ,zlib)))
+ (home-page "https://github.com/jts/nanopolish")
+ (synopsis "Signal-level analysis of Oxford Nanopore sequencing data")
+ (description
+ "This package analyses the Oxford Nanopore sequencing data at signal-level.
+Nanopolish can calculate an improved consensus sequence for a draft genome
+assembly, detect base modifications, call SNPs (Single nucleotide
+polymorphisms) and indels with respect to a reference genome and more.")
+ (license license:expat))))
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 8038c18326..d6e38bb0b8 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -34,6 +34,7 @@
#:use-module (gnu packages bison)
#:use-module (gnu packages cdrom)
#:use-module (gnu packages check)
+ #:use-module (gnu packages compression)
#:use-module (gnu packages cross-base)
#:use-module (gnu packages disk)
#:use-module (gnu packages firmware)
@@ -361,7 +362,7 @@ tree binary files. These are board description files used by Linux and BSD.")
(define u-boot
(package
(name "u-boot")
- (version "2018.09")
+ (version "2018.11")
(source (origin
(method url-fetch)
(uri (string-append
@@ -369,12 +370,13 @@ tree binary files. These are board description files used by Linux and BSD.")
"u-boot-" version ".tar.bz2"))
(sha256
(base32
- "0s122kyz1svvs2yjzj4j9qravl3ra4vn0fjqgski7rlczqyg56w3"))))
+ "0znkwljfwwn4y7j20pzz4ilqw8znphrfxns0x1lwdzh3xbr96z3k"))))
(native-inputs
`(("bc" ,bc)
("bison" ,bison)
("dtc" ,dtc)
("flex" ,flex)
+ ("lz4" ,lz4)
("openssl" ,openssl)
("python-2" ,python-2)
("python2-coverage" ,python2-coverage)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6ce9bdd16f..f08a204fb8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -1593,14 +1593,14 @@ the Kaplan-Meier and Aalen-Johansen methods.")
(define-public r-dimred
(package
(name "r-dimred")
- (version "0.1.0")
+ (version "0.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "dimRed" version))
(sha256
(base32
- "0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v"))))
+ "0ssy2qriiy6zdawriqcbl67qiq68ipml3frq7aqlq70r2fqyyw48"))))
(properties `((upstream-name . "dimRed")))
(build-system r-build-system)
(propagated-inputs `(("r-drr" ,r-drr)))
@@ -1864,14 +1864,14 @@ provides a one-row summary of model-level statistics.")
(define-public r-recipes
(package
(name "r-recipes")
- (version "0.1.3")
+ (version "0.1.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "recipes" version))
(sha256
(base32
- "1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy"))))
+ "0bwijw4427v2k5z3qci2kyr5dyzql8b3lvf88rwy16p741jckjsn"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
@@ -4450,14 +4450,14 @@ and adds the annotation to the plot.")
(define-public r-ggpubr
(package
(name "r-ggpubr")
- (version "0.1.9")
+ (version "0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggpubr" version))
(sha256
(base32
- "0rvfgii2gxarra7d33n6c63ky0mivxxyx35acsrn94xkbd8mbcsj"))))
+ "0rkpcjb1x7lvhj68aam5airbi534jqyiq12x5xk40a25iifhghq6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cowplot" ,r-cowplot)
@@ -6725,14 +6725,14 @@ detection, parallelism through BLAS and parallel user templates.")
(define-public r-sjstats
(package
(name "r-sjstats")
- (version "0.17.1")
+ (version "0.17.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjstats" version))
(sha256
(base32
- "0s9b0xr8gmcm0kh48jkwk8ns0lqknd8kpys4f7czf0xwzmcx2n1z"))))
+ "0c7g35vn7r9rylhp0gj1yfslg7jybwrhpqpp7vdcd90xfccih24r"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bayesplot" ,r-bayesplot)
@@ -6803,14 +6803,14 @@ differentiation.")
(define-public r-ggeffects
(package
(name "r-ggeffects")
- (version "0.6.0")
+ (version "0.7.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggeffects" version))
(sha256
(base32
- "00l02g7yssqxmcmbrzk2wsj3i9ywd0xsy0rmbfh57q1qi76a1wq1"))))
+ "070c3fxmzajq2fy816s5pfqdyjlnzkabj97z7fcsva4h5rnqi9d6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-crayon" ,r-crayon)
@@ -7499,14 +7499,14 @@ netCDF files.")
(define-public r-biocmanager
(package
(name "r-biocmanager")
- (version "1.30.3")
+ (version "1.30.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "BiocManager" version))
(sha256
(base32
- "0mfvx1xzsgiag9p42kdyqg8fvajyakrdy3z2smhdlaawzbi0qmax"))))
+ "0kxs76pixk1d2lpvkyrq6nnvv1rqf55ph5f7igkadyyqirf3y2ah"))))
(properties `((upstream-name . "BiocManager")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/BiocManager/")
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index 3e32998a9f..ce1add3915 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -3659,7 +3659,11 @@ after buffer changes.")
version ".tar"))
(sha256
(base32
- "108wgxg7fb4byaiasgvbxv2hq7b00biq9f0mh9hy6vw4160y5w24"))))
+ "108wgxg7fb4byaiasgvbxv2hq7b00biq9f0mh9hy6vw4160y5w24"))
+ (patches
+ ;; Patch awaiting inclusion upstream (see:
+ ;; https://github.com/realgud/realgud/pull/226).
+ (search-patches "emacs-realgud-fix-configure-ac.patch"))))
(build-system emacs-build-system)
(arguments
`(#:tests? #t
diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm
index 1f73025db7..34a015bdf7 100644
--- a/gnu/packages/game-development.scm
+++ b/gnu/packages/game-development.scm
@@ -397,7 +397,7 @@ support.")
(define-public tiled
(package
(name "tiled")
- (version "1.2.0")
+ (version "1.2.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -406,7 +406,7 @@ support.")
(file-name (git-file-name name version))
(sha256
(base32
- "1rra48hlkcgqxwxi802fb182p1q0723c9hhfvkd5inz9467idd4c"))))
+ "1dl06k2p0r7l20ghxcq5sn7j0jl2l8q4m27vmfs2qfgvldjll2h3"))))
(build-system gnu-build-system)
(inputs
`(("qtbase" ,qtbase)
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 3679aa09c6..bc5d3d581b 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -5606,8 +5606,8 @@ quotation from a collection of quotes.")
(lambda* (#:key outputs inputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(data (assoc-ref inputs "xonotic-data")))
- (copy-recursively (string-append data "/share/xonotic")
- (string-append out "/share/xonotic"))
+ (symlink (string-append data "/share/xonotic")
+ (string-append out "/share/xonotic"))
#t)))
(add-after 'install-binaries 'wrap-binaries
(lambda* (#:key outputs inputs #:allow-other-keys)
diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm
index 03c8b497b8..851a31447b 100644
--- a/gnu/packages/gl.scm
+++ b/gnu/packages/gl.scm
@@ -259,7 +259,8 @@ also known as DXTn or DXTC) for Mesa.")
("libxvmc" ,libxvmc)
,@(match (%current-system)
((or "x86_64-linux" "i686-linux")
- `(("llvm" ,llvm)))
+ ;; FIXME: Change to 'llvm' in the next rebuild cycle.
+ `(("llvm" ,llvm-without-rtti)))
(_
`()))
("makedepend" ,makedepend)
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index f3eb2dcd36..022ac5ee24 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -2286,8 +2286,8 @@ Guile.")
;; There has not been any release yet.
(define-public guile-newt
- (let ((commit "4eaa3cf84b9b426cc0ff7bec48b76cca6ca3ec83")
- (revision "1"))
+ (let ((commit "a73889c57b0572347f7641facdb1bcf08922feff")
+ (revision "2"))
(package
(name "guile-newt")
(version (string-append "0-" revision "." (string-take commit 9)))
@@ -2299,7 +2299,7 @@ Guile.")
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "0ww7jbdsmjlsxm60ym6cb5s5kc4ljz8bn4y2lvcqnap0aihqfk10"))))
+ "0k37vir22r2sq121lyy74grfai4643s7kr55z01k4j0bh27i06c3"))))
(build-system gnu-build-system)
(arguments
'(#:make-flags
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 11e1b1539b..5503e5dd19 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -900,7 +900,7 @@ language bindings to VIGRA.")
(define-public libwebp
(package
(name "libwebp")
- (version "1.0.0")
+ (version "1.0.1")
(source
(origin
;; No tarballs are provided for >0.6.1.
@@ -911,7 +911,7 @@ language bindings to VIGRA.")
(file-name (git-file-name name version))
(sha256
(base32
- "1w8jzdbr1s4238ygyrlxryycss3f2z6d9amxdq8m82nl3l6skar4"))))
+ "09l4pq4k2acglkmwr96arn79rssl54sv7vrdrgsxqlg7v8c882zh"))))
(build-system gnu-build-system)
(inputs
`(("freeglut" ,freeglut)
diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 51baade8fd..97d36c72d3 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -1988,151 +1988,6 @@ new Date();"))
`(("java-junit" ,java-junit)
,@(package-inputs ant/java8)))))
-(define-public clojure
- (let* ((remove-archives '(begin
- (for-each delete-file
- (find-files "." ".*\\.(jar|zip)"))
- #t))
- (submodule (lambda (prefix version hash)
- (origin
- (method url-fetch)
- (uri (string-append "https://github.com/clojure/"
- prefix version ".tar.gz"))
- (sha256 (base32 hash))
- (modules '((guix build utils)))
- (snippet remove-archives)))))
- (package
- (name "clojure")
- (version "1.9.0")
- (source
- (origin
- (method url-fetch)
- (uri
- (string-append "https://github.com/clojure/clojure/archive/clojure-"
- version ".tar.gz"))
- (sha256
- (base32 "0xjbzcw45z32vsn9pifp7ndysjzqswp5ig0jkjpivigh2ckkdzha"))
- (modules '((guix build utils)))
- (snippet remove-archives)))
- (build-system ant-build-system)
- (arguments
- `(#:modules ((guix build ant-build-system)
- (guix build utils)
- (ice-9 ftw)
- (ice-9 regex)
- (srfi srfi-1)
- (srfi srfi-26))
- #:test-target "test"
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'unpack-submodule-sources
- (lambda* (#:key inputs #:allow-other-keys)
- (for-each
- (lambda (name)
- (mkdir-p name)
- (with-directory-excursion name
- (invoke "tar"
- ;; Use xz for repacked tarball.
- "--xz"
- "--extract"
- "--verbose"
- "--file" (assoc-ref inputs name)
- "--strip-components=1"))
- (copy-recursively (string-append name "/src/main/clojure/")
- "src/clj/"))
- '("core-specs-alpha-src"
- "data-generators-src"
- "spec-alpha-src"
- "test-check-src"
- "test-generative-src"
- "tools-namespace-src"))
- #t))
- (add-after 'unpack 'fix-manifest-classpath
- (lambda _
- (substitute* "build.xml"
- (("<attribute name=\"Class-Path\" value=\".\"/>") ""))
- #t))
- ;; The javadoc target is not built by default.
- (add-after 'build 'build-doc
- (lambda _
- (invoke "ant" "javadoc")))
- ;; Needed since no install target is provided.
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((java-dir (string-append (assoc-ref outputs "out")
- "/share/java/")))
- ;; Install versioned to avoid collisions.
- (install-file (string-append "clojure-" ,version ".jar")
- java-dir)
- #t)))
- ;; Needed since no install-doc target is provided.
- (add-after 'install 'install-doc
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((doc-dir (string-append (assoc-ref outputs "out")
- "/share/doc/clojure-"
- ,version "/")))
- (copy-recursively "doc/clojure" doc-dir)
- (copy-recursively "target/javadoc/"
- (string-append doc-dir "javadoc/"))
- (for-each (cut install-file <> doc-dir)
- (filter (cut string-match
- ".*\\.(html|markdown|md|txt)"
- <>)
- (scandir "./")))
- #t))))))
- ;; The native-inputs below are needed to run the tests.
- (native-inputs
- `(("core-specs-alpha-src"
- ,(submodule "core.specs.alpha/archive/core.specs.alpha-"
- "0.1.24"
- "0v2a0svf1ar2y42ajxwsjr7zmm5j7pp2zwrd2jh3k7xzd1p9x1fv"))
- ("data-generators-src"
- ,(submodule "data.generators/archive/data.generators-"
- "0.1.2"
- "0kki093jp4ckwxzfnw8ylflrfqs8b1i1wi9iapmwcsy328dmgzp1"))
- ("spec-alpha-src"
- ,(submodule "spec.alpha/archive/spec.alpha-"
- "0.1.143"
- "00alf0347licdn773w2jarpllyrbl52qz4d8mw61anjksacxylzz"))
- ("test-check-src"
- ,(submodule "test.check/archive/test.check-"
- "0.9.0"
- "0p0mnyhr442bzkz0s4k5ra3i6l5lc7kp6ajaqkkyh4c2k5yck1md"))
- ("test-generative-src"
- ,(submodule "test.generative/archive/test.generative-"
- "0.5.2"
- "1pjafy1i7yblc7ixmcpfq1lfbyf3jaljvkgrajn70sws9xs7a9f8"))
- ("tools-namespace-src"
- ,(submodule "tools.namespace/archive/tools.namespace-"
- "0.2.11"
- "10baak8v0hnwz2hr33bavshm7y49mmn9zsyyms1dwjz45p5ymhy0"))))
- (home-page "https://clojure.org/")
- (synopsis "Lisp dialect running on the JVM")
- (description "Clojure is a dynamic, general-purpose programming language,
-combining the approachability and interactive development of a scripting
-language with an efficient and robust infrastructure for multithreaded
-programming. Clojure is a compiled language, yet remains completely dynamic
-– every feature supported by Clojure is supported at runtime. Clojure
-provides easy access to the Java frameworks, with optional type hints and type
-inference, to ensure that calls to Java can avoid reflection.
-
-Clojure is a dialect of Lisp, and shares with Lisp the code-as-data philosophy
-and a powerful macro system. Clojure is predominantly a functional programming
-language, and features a rich set of immutable, persistent data structures.
-When mutable state is needed, Clojure offers a software transactional memory
-system and reactive Agent system that ensure clean, correct, multithreaded
-designs.")
- ;; Clojure is licensed under EPL1.0
- ;; ASM bytecode manipulation library is licensed under BSD-3
- ;; Guava Murmur3 hash implementation is licensed under APL2.0
- ;; src/clj/repl.clj is licensed under CPL1.0
- ;;
- ;; See readme.html or readme.txt for details.
- (license (list license:epl1.0
- license:bsd-3
- license:asl2.0
- license:cpl1.0)))))
-
(define-public javacc-4
(package
(name "javacc")
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index bdad1602b9..661b7ed2ca 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -400,8 +400,8 @@ It has been modified to remove all non-free binary blobs.")
;; supports qemu "virt" machine and possibly a large number of ARM boards.
;; See : https://wiki.debian.org/DebianKernel/ARMMP.
-(define %linux-libre-version "4.19.1")
-(define %linux-libre-hash "12mrrgg2ih4jiylpy45q5nsd8afj3nya0klr543s0mcga88v9527")
+(define %linux-libre-version "4.19.2")
+(define %linux-libre-hash "1yh4ll9qh4wmf9r62ksyic57g1iy1b84qbv855l545ilk12znbmj")
(define %linux-libre-4.19-patches
(list %boot-logo-patch
@@ -423,8 +423,8 @@ It has been modified to remove all non-free binary blobs.")
#:patches %linux-libre-4.19-patches
#:configuration-file kernel-config))
-(define %linux-libre-4.14-version "4.14.80")
-(define %linux-libre-4.14-hash "0h4hi5lqizdx5nk0f3immbcv2n7p5jh26m80v4x6bw4wi5b44fra")
+(define %linux-libre-4.14-version "4.14.81")
+(define %linux-libre-4.14-hash "0vxs8k7ka8aqnn1fcr88bhr07wa5jg83pq1rcjby9k422mbv254q")
(define-public linux-libre-4.14
(make-linux-libre %linux-libre-4.14-version
@@ -433,8 +433,8 @@ It has been modified to remove all non-free binary blobs.")
#:configuration-file kernel-config))
(define-public linux-libre-4.9
- (make-linux-libre "4.9.136"
- "1kk6px1jcwbgkpfmf9pdklk6kz90h5l8fvdqwmvnk4bz6b2xrrfp"
+ (make-linux-libre "4.9.137"
+ "1d8313r2k0qr4x7nqlnbwn5lzfc7dz6w8sfg47jml1q38c2fyjf2"
%intel-compatible-systems
#:configuration-file kernel-config))
@@ -3188,7 +3188,7 @@ is flexible, efficient and uses a modular implementation.")
(define-public fuse-exfat
(package
(name "fuse-exfat")
- (version "1.2.8")
+ (version "1.3.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -3196,7 +3196,7 @@ is flexible, efficient and uses a modular implementation.")
version "/" name "-" version ".tar.gz"))
(sha256
(base32
- "1jwnxw0bg9v5ij8xvbg4xpjr50nykq8a1lmc2xkblz204rq7wd8z"))))
+ "1lz00q8g4590mrdqmf13ba1s9zrqq645ymgm5p9y99ad0qv22r87"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 9fb25a15a2..6849cdd2bf 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -9,6 +9,7 @@
;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Benjamin Slade <slade@jnanam.net>
+;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -34,6 +35,8 @@
#:use-module (guix hg-download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system ant)
+ #:use-module (guix build-system clojure)
#:use-module (guix build-system asdf)
#:use-module (guix build-system trivial)
#:use-module (gnu packages admin)
@@ -530,8 +533,12 @@ statistical profiler, a code coverage tool, and many other extensions.")
(install-file kernel libdir)
(install-file heap libdir)
- (let ((dirs '("lib" "library" "examples" "contrib"
- "tools" "objc-bridge")))
+ (let ((dirs '("lib" "library" "examples" "tools" "objc-bridge"
+ ,(match (%current-system)
+ ("x86_64-linux"
+ "x86-headers64")
+ ("i686-linux"
+ "x86-headers")))))
(for-each copy-recursively
dirs
(map (cut string-append libdir <>) dirs)))
@@ -559,6 +566,119 @@ interface.")
(license (list license:lgpl2.1
license:clarified-artistic)))) ;TRIVIAL-LDAP package
+(define-public clojure
+ (let* ((lib (lambda (prefix version hash)
+ (origin (method url-fetch)
+ (uri (string-append "https://github.com/clojure/"
+ prefix version ".tar.gz"))
+ (sha256 (base32 hash)))))
+ ;; The libraries below are needed to run the tests.
+ (libraries
+ `(("core-specs-alpha-src"
+ ,(lib "core.specs.alpha/archive/core.specs.alpha-"
+ "0.1.24"
+ "0v2a0svf1ar2y42ajxwsjr7zmm5j7pp2zwrd2jh3k7xzd1p9x1fv"))
+ ("data-generators-src"
+ ,(lib "data.generators/archive/data.generators-"
+ "0.1.2"
+ "0kki093jp4ckwxzfnw8ylflrfqs8b1i1wi9iapmwcsy328dmgzp1"))
+ ("spec-alpha-src"
+ ,(lib "spec.alpha/archive/spec.alpha-"
+ "0.1.143"
+ "00alf0347licdn773w2jarpllyrbl52qz4d8mw61anjksacxylzz"))
+ ("test-check-src"
+ ,(lib "test.check/archive/test.check-"
+ "0.9.0"
+ "0p0mnyhr442bzkz0s4k5ra3i6l5lc7kp6ajaqkkyh4c2k5yck1md"))
+ ("test-generative-src"
+ ,(lib "test.generative/archive/test.generative-"
+ "0.5.2"
+ "1pjafy1i7yblc7ixmcpfq1lfbyf3jaljvkgrajn70sws9xs7a9f8"))
+ ("tools-namespace-src"
+ ,(lib "tools.namespace/archive/tools.namespace-"
+ "0.2.11"
+ "10baak8v0hnwz2hr33bavshm7y49mmn9zsyyms1dwjz45p5ymhy0"))))
+ (library-names (match libraries
+ (((library-name _) ...)
+ library-name))))
+
+ (package
+ (name "clojure")
+ (version "1.9.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/clojure/clojure/archive/clojure-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0xjbzcw45z32vsn9pifp7ndysjzqswp5ig0jkjpivigh2ckkdzha"))))
+ (build-system ant-build-system)
+ (arguments
+ `(#:imported-modules ((guix build clojure-utils)
+ (guix build guile-build-system)
+ ,@%ant-build-system-modules)
+ #:modules ((guix build ant-build-system)
+ (guix build clojure-utils)
+ (guix build java-utils)
+ (guix build utils)
+ (srfi srfi-26))
+ #:test-target "test"
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'unpack-library-sources
+ (lambda* (#:key inputs #:allow-other-keys)
+ (define (extract-library name)
+ (mkdir-p name)
+ (with-directory-excursion name
+ (invoke "tar"
+ "--extract"
+ "--verbose"
+ "--file" (assoc-ref inputs name)
+ "--strip-components=1"))
+ (copy-recursively (string-append name "/src/main/clojure/")
+ "src/clj/"))
+ (for-each extract-library ',library-names)
+ #t))
+ (add-after 'unpack-library-sources 'fix-manifest-classpath
+ (lambda _
+ (substitute* "build.xml"
+ (("<attribute name=\"Class-Path\" value=\".\"/>") ""))
+ #t))
+ (add-after 'build 'build-javadoc ant-build-javadoc)
+ (replace 'install (install-jars "./"))
+ (add-after 'install-license-files 'install-doc
+ (cut install-doc #:doc-dirs '("doc/clojure/") <...>))
+ (add-after 'install-doc 'install-javadoc
+ (install-javadoc "target/javadoc/")))))
+ (native-inputs libraries)
+ (home-page "https://clojure.org/")
+ (synopsis "Lisp dialect running on the JVM")
+ (description "Clojure is a dynamic, general-purpose programming language,
+combining the approachability and interactive development of a scripting
+language with an efficient and robust infrastructure for multithreaded
+programming. Clojure is a compiled language, yet remains completely dynamic
+– every feature supported by Clojure is supported at runtime. Clojure
+provides easy access to the Java frameworks, with optional type hints and type
+inference, to ensure that calls to Java can avoid reflection.
+
+Clojure is a dialect of Lisp, and shares with Lisp the code-as-data philosophy
+and a powerful macro system. Clojure is predominantly a functional programming
+language, and features a rich set of immutable, persistent data structures.
+When mutable state is needed, Clojure offers a software transactional memory
+system and reactive Agent system that ensure clean, correct, multithreaded
+designs.")
+ ;; Clojure is licensed under EPL1.0
+ ;; ASM bytecode manipulation library is licensed under BSD-3
+ ;; Guava Murmur3 hash implementation is licensed under APL2.0
+ ;; src/clj/repl.clj is licensed under CPL1.0
+
+ ;; See readme.html or readme.txt for details.
+ (license (list license:epl1.0
+ license:bsd-3
+ license:asl2.0
+ license:cpl1.0)))))
+
(define-public femtolisp
(let ((commit "68c5b1225572ecf2c52baf62f928063e5a30511b")
(revision "1"))
@@ -1488,6 +1608,158 @@ compressor. It works on data produced by @code{parse-js} to generate a
("sbcl-cl-uglify-js" ,sbcl-cl-uglify-js)))
(synopsis "JavaScript compressor")))
+(define-public clojure-algo-generic
+ (package
+ (name "clojure-algo-generic")
+ (version "0.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/clojure/algo.generic/archive"
+ "/algo.generic-" version ".tar.gz"))
+ (sha256
+ (base32 "12w9681i545gp1af4576z1qbixwps1j13c16fmcc7zsb0bd1zr7w"))))
+ (build-system clojure-build-system)
+ (arguments
+ '(#:source-dirs '("src/main/clojure/")
+ #:test-dirs '("src/test/clojure/")
+ #:doc-dirs '()))
+ (synopsis "Generic versions of common functions")
+ (description
+ "Generic versions of commonly used functions, implemented as multimethods
+that can be implemented for any data type.")
+ (home-page "https://github.com/clojure/algo.generic")
+ (license license:epl1.0)))
+
+(define-public clojure-algo-monads
+ (package
+ (name "clojure-algo-monads")
+ (version "0.1.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/clojure/algo.monads/archive"
+ "/algo.monads-" version ".tar.gz"))
+ (sha256
+ (base32 "14gbvfgmrda990h45yn7zag83vp1kdkz4f4yzmyvkr0sjihlgdmq"))))
+ (build-system clojure-build-system)
+ (arguments
+ '(#:source-dirs '("src/main/clojure/")
+ #:test-dirs '("src/test/clojure/")
+ #:doc-dirs '()))
+ (native-inputs
+ `(("clojure-tools-macro" ,clojure-tools-macro)))
+ (synopsis
+ "Monad Macros and Definitions")
+ (description
+ "This library contains the most commonly used monads as well as macros for
+defining and using monads and useful monadic functions.")
+ (home-page "https://github.com/clojure/algo.monads")
+ (license license:epl1.0)))
+
+(define-public clojure-core-match
+ (let ((commit "1837ffbd4a150e8f3953b2d9ed5cf4a4ad3720a7")
+ (revision "1")) ; this is the 1st commit buildable with clojure 1.9
+ (package
+ (name "clojure-core-match")
+ (version (git-version "0.3.0-alpha5" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/clojure/core.match.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "04bdlp5dgkrqzrz0lw3mfwmygj2218qnm1cz3dkb9wy4m0238s4d"))))
+ (build-system clojure-build-system)
+ (arguments
+ '(#:source-dirs '("src/main/clojure")
+ #:test-dirs '("src/test/clojure")
+ #:doc-dirs '()))
+ (synopsis "Optimized pattern matching for Clojure")
+ (description
+ "An optimized pattern matching library for Clojure.
+It supports Clojure 1.5.1 and later as well as ClojureScript.")
+ (home-page "https://github.com/clojure/core.match")
+ (license license:epl1.0))))
+
+(define-public clojure-instaparse
+ (let ((commit "dcfffad5b065e750f0f5835f017cdd8188b8ca2e")
+ (version "1.4.9")) ; upstream forget to tag this release
+ (package
+ (name "clojure-instaparse")
+ (version version)
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Engelberg/instaparse.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "002mrgin4z3dqy88r1lak7smd0m7x8d22vmliw0m6w6mh5pa17lk"))))
+ (build-system clojure-build-system)
+ (arguments
+ '(#:doc-dirs '("docs/")))
+ (synopsis "No grammar left behind")
+ (description
+ "Instaparse aims to be the simplest way to build parsers in Clojure.
+
+@itemize
+@item Turns @emph{standard EBNF or ABNF notation} for context-free grammars
+into an executable parser that takes a string as an input and produces a parse
+tree for that string.
+
+@item @dfn{No Grammar Left Behind}: Works for @emph{any} context-free grammar,
+including @emph{left-recursive}, @emph{right-recursive}, and @emph{ambiguous}
+grammars.
+
+@item Extends the power of context-free grammars with PEG-like syntax for
+lookahead and negative lookahead.
+
+@item Supports both of Clojure's most popular tree formats (hiccup and enlive)
+as output targets
+
+@item Detailed reporting of parse errors.
+
+@item Optionally produces lazy sequence of all parses (especially useful for
+diagnosing and debugging ambiguous grammars).
+
+@item ``Total parsing'' mode where leftover string is embedded in the parse
+tree.
+
+@item Optional combinator library for building grammars programmatically.
+
+@item Performant.
+@end itemize")
+ (home-page "https://github.com/Engelberg/instaparse")
+ (license license:epl1.0))))
+
+(define-public clojure-tools-macro
+ (package
+ (name "clojure-tools-macro")
+ (version "0.1.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/clojure/tools.macro/archive"
+ "/tools.macro-" version ".tar.gz"))
+ (sha256
+ (base32 "0fs64a0g63xx6g7sj6vrsqknhl90s0isf6k053nw8vv5prfzc7v6"))))
+ (build-system clojure-build-system)
+ (arguments
+ '(#:source-dirs '("src/main/clojure/")
+ #:test-dirs '("src/test/clojure/")
+ #:doc-dirs '()))
+ (synopsis "Utilities for macro writers")
+ (description "Tools for writing macros.")
+ (home-page "https://github.com/clojure/tools.macro")
+ (license license:epl1.0)))
+
(define-public confusion-mdl
(let* ((commit "12a055581fc262225272df43287dae48281900f5"))
(package
diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm
index f57e263449..0d3bff9476 100644
--- a/gnu/packages/llvm.scm
+++ b/gnu/packages/llvm.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2016 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2016, 2018 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
@@ -66,6 +66,7 @@
"-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE"
"-DBUILD_SHARED_LIBS:BOOL=TRUE"
"-DLLVM_ENABLE_FFI:BOOL=TRUE"
+ "-DLLVM_REQUIRES_RTTI=1" ; For some third-party utilities
"-DLLVM_INSTALL_UTILS=ON") ; Needed for rustc.
;; Don't use '-g' during the build, to save space.
@@ -91,6 +92,26 @@ languages is in development. The compiler infrastructure includes mirror sets
of programming tools as well as libraries with equivalent functionality.")
(license license:ncsa)))
+;; FIXME: This package is here to prevent many rebuilds on x86_64 and i686
+;; from commit fc9dbf41311d99d0fd8befc789ea7c0e35911890. Update users of
+;; this in the next rebuild cycle.
+(define-public llvm-without-rtti
+ (package
+ (inherit llvm)
+ (arguments
+ `(#:configure-flags '("-DCMAKE_SKIP_BUILD_RPATH=FALSE"
+ "-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE"
+ "-DBUILD_SHARED_LIBS:BOOL=TRUE"
+ "-DLLVM_ENABLE_FFI:BOOL=TRUE"
+ "-DLLVM_INSTALL_UTILS=ON")
+ #:build-type "Release"
+ #:phases (modify-phases %standard-phases
+ (add-before 'build 'shared-lib-workaround
+ (lambda _
+ (setenv "LD_LIBRARY_PATH"
+ (string-append (getcwd) "/lib"))
+ #t)))))))
+
(define* (clang-runtime-from-llvm llvm hash
#:optional (patches '()))
(package
@@ -281,18 +302,6 @@ code analysis tools.")
(base32
"1ybmnid4pw2hxn12ax5qa5kl1ldfns0njg8533y3mzslvd5cx0kf"))))))
-;; This is for Faust 2
-(define-public llvm-3.8-with-rtti
- (package (inherit llvm-3.8)
- (name "llvm-with-rtti")
- (arguments
- (substitute-keyword-arguments (package-arguments llvm)
- ((#:configure-flags flags)
- `(append '("-DCMAKE_SKIP_BUILD_RPATH=FALSE"
- "-DCMAKE_BUILD_WITH_INSTALL_RPATH=FALSE"
- "-DLLVM_REQUIRES_RTTI=1")
- ,flags))))))
-
(define-public clang-runtime-3.8
(clang-runtime-from-llvm
llvm-3.8
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 990a6c771a..09c525ff20 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -8,6 +8,7 @@
;;; Copyright © 2018 Mark Meyer <mark@ofosos.org>
;;; Copyright © 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
+;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -300,7 +301,9 @@ networks) based on simulation of (stochastic) flow in graphs.")
"1l5jbhwjpsj38x8b9698hfpkv75h8hn3kj0gihjhn8ym2cwwv110"))))
(build-system ocaml-build-system)
(arguments
- `(#:phases
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:phases
(modify-phases %standard-phases
(add-before 'configure 'patch-paths
(lambda _
diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm
index 58e26d82ff..b640884933 100644
--- a/gnu/packages/man.scm
+++ b/gnu/packages/man.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012, 2014, 2015, 2017 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2012, 2014, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014 David Thompson <dthompson2@worcester.edu>
;;; Copyright © 2015, 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Alex Kost <alezost@gmail.com>
@@ -216,6 +216,18 @@ Linux kernel and C library interfaces employed by user-space programs.")
automatically.")
(license gpl3+)))
+(define-public help2man/latest
+ (package
+ (inherit help2man)
+ (version "1.47.8")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://gnu/help2man/help2man-"
+ version ".tar.xz"))
+ (sha256
+ (base32
+ "1p5830h88cx0zn0snwaj0vpph81xicpsirfwlxmcgjrlmn0nm3sj"))))))
+
(define-public txt2man
(package
(name "txt2man")
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 3e1fe7c2c1..7dc8b62a47 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -28,6 +28,7 @@
;;; Copyright © 2018 Adam Massmann <massmannak@gmail.com>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2018 Eric Brown <brown@fastmail.com>
+;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -1808,6 +1809,41 @@ scientific applications modeled by partial differential equations.")
,@(delete "--with-mpi=0" ,cf)))))
(synopsis "Library to solve PDEs (with complex scalars and MPI support)")))
+(define-public python-petsc4py
+ (package
+ (name "python-petsc4py")
+ (version "3.9.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "petsc4py" version))
+ (sha256
+ (base32
+ "1f8zd1ac9irsgkyqmzq30d9kl10fy1nh6zk312dhs43g449fkkhc"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'pre-build
+ (lambda _
+ ;; Define path to PETSc installation.
+ (setenv "PETSC_DIR" (assoc-ref %build-inputs "petsc"))
+ #t))
+ (add-before 'check 'mpi-setup
+ ,%openmpi-setup))))
+ (inputs
+ `(("petsc" ,petsc-openmpi)
+ ("python-numpy" ,python-numpy)))
+ (home-page "https://bitbucket.org/petsc/petsc4py/")
+ (synopsis "Python bindings for PETSc")
+ (description "PETSc, the Portable, Extensible Toolkit for
+Scientific Computation, is a suite of data structures and routines for
+the scalable (parallel) solution of scientific applications modeled by
+partial differential equations. It employs the MPI standard for all
+message-passing communication. @code{petsc4py} provides Python
+bindings to almost all functions of PETSc.")
+ (license license:bsd-3)))
+
(define-public python-kiwisolver
(package
(name "python-kiwisolver")
@@ -1939,6 +1975,43 @@ arising after the discretization of partial differential equations.")
,@(alist-delete "petsc" (package-propagated-inputs slepc-openmpi))))
(synopsis "Scalable library for eigenproblems (with complex scalars and MPI support)")))
+(define-public python-slepc4py
+ (package
+ (name "python-slepc4py")
+ (version "3.9.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "slepc4py" version))
+ (sha256
+ (base32
+ "02xr0vndgibgkz3rgprqk05n3mk5mpgqw550sr4681vcsgz4zvb7"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'pre-build
+ (lambda _
+ ;; Define path to PETSc installation.
+ (setenv "PETSC_DIR" (assoc-ref %build-inputs "petsc"))
+ ;; Define path to SLEPc installation.
+ (setenv "SLEPC_DIR" (assoc-ref %build-inputs "slepc"))
+ #t))
+ (add-before 'check 'mpi-setup
+ ,%openmpi-setup))))
+ (inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-petsc4py" ,python-petsc4py)
+ ("slepc" ,slepc-openmpi)))
+ (home-page "https://bitbucket.org/slepc/slepc4py/")
+ (synopsis "Python bindings for SLEPc")
+ (description "SLEPc, the Scalable Library for Eigenvalue Problem
+Computations, is based on PETSc, the Portable, Extensible Toolkit for
+Scientific Computation. It employs the MPI standard for all
+message-passing communication. @code{slepc4py} provides Python
+bindings to almost all functions of SLEPc.")
+ (license license:bsd-3)))
+
(define-public mumps
(package
(name "mumps")
@@ -2716,6 +2789,18 @@ to BMP, JPEG or PNG image formats.")
(lambda _
(chmod "src/maxima" #o555)
#t))
+ (replace 'check
+ (lambda _
+ ;; This is derived from the testing code in the "debian/rules" file
+ ;; of Debian's Maxima package.
+ ;; If Maxima can successfully run this, the binary to be installed
+ ;; should be fine.
+ (zero?
+ (system
+ (string-append "./maxima-local "
+ "--lisp=gcl "
+ "--batch-string=\"run_testsuite();\" "
+ "| grep -q \"No unexpected errors found\"")))))
;; Make sure the doc and emacs files are found in the
;; standard location. Also configure maxima to find gnuplot
;; without having it on the PATH.
@@ -3861,15 +3946,15 @@ as equations, scalars, vectors, and matrices.")
(define-public z3
(package
(name "z3")
- (version "4.5.0")
+ (version "4.8.1")
+ (home-page "https://github.com/Z3Prover/z3")
(source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/Z3Prover/z3/archive/z3-"
- version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference (url home-page)
+ (commit (string-append "z3-" version))))
(sha256
(base32
- "032a5lvji2liwmc25jv52bdrhimqflvqbpg77ccaq1jykhiivbmf"))))
+ "1vr57bwx40sd5riijyrhy70i2wnv9xrdihf6y5zdz56yq88rl48f"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
@@ -3898,43 +3983,57 @@ as equations, scalars, vectors, and matrices.")
(synopsis "Theorem prover")
(description "Z3 is a theorem prover and @dfn{satisfiability modulo
theories} (SMT) solver. It provides a C/C++ API, as well as Python bindings.")
- (home-page "https://github.com/Z3Prover/z3")
(license license:expat)))
(define-public cubicle
(package
(name "cubicle")
- (version "1.1.1")
+ (version "1.1.2")
(source (origin
(method url-fetch)
(uri (string-append "http://cubicle.lri.fr/cubicle-"
version ".tar.gz"))
(sha256
(base32
- "1sny9c4fm14k014pk62ibpwbrjjirkx8xmhs9jg7q1hk7y7x3q2h"))))
+ "10kk80jdmpdvql88sdjsh7vqzlpaphd8vip2lp47aarxjkwjlz1q"))))
(build-system gnu-build-system)
(native-inputs
- `(("ocaml" ,ocaml)
+ `(("automake" ,automake)
+ ("ocaml" ,ocaml)
("which" ,(@@ (gnu packages base) which))))
(propagated-inputs
- `(("z3" ,z3)))
+ `(("ocaml-num" ,ocaml-num)
+ ("z3" ,z3)))
(arguments
`(#:configure-flags (list "--with-z3")
+ #:make-flags (list "QUIET=")
#:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'configure 'configure-for-release
(lambda _
(substitute* "Makefile.in"
- (("SVNREV=") "#SVNREV="))))
+ (("SVNREV=") "#SVNREV="))
+ #t))
(add-before 'configure 'fix-/bin/sh
(lambda _
(substitute* "configure"
- (("/bin/sh") (which "sh")))))
+ (("-/bin/sh") (string-append "-" (which "sh"))))
+ #t))
(add-before 'configure 'fix-smt-z3wrapper.ml
(lambda _
(substitute* "Makefile.in"
- (("\\\\n") "")))))))
+ (("\\\\n") ""))
+ #t))
+ (add-before 'configure 'fix-ocaml-num
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "Makefile.in"
+ (("= \\$\\(FUNCTORYLIB\\)")
+ (string-append "= -I "
+ (assoc-ref inputs "ocaml-num")
+ "/lib/ocaml/site-lib"
+ " $(FUNCTORYLIB)")))
+ #t)))))
(home-page "http://cubicle.lri.fr/")
(synopsis "Model checker for array-based systems")
(description "Cubicle is a model checker for verifying safety properties
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index fc8aadef29..f08a7f5f88 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -6,6 +6,7 @@
;;; Copyright © 2017 Dave Love <fx@gnu.org>
;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Paul Garlick <pgarlick@tourbillion-technology.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -29,6 +30,7 @@
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system python)
#:use-module (gnu packages)
#:use-module (gnu packages gcc)
#:use-module (gnu packages linux)
@@ -263,3 +265,43 @@ only provides @code{MPI_THREAD_FUNNELED}.")))
;; in the build environment than the package wants while testing.
(setenv "OMPI_MCA_rmaps_base_oversubscribe" "yes")
#t))
+
+(define-public python-mpi4py
+ (package
+ (name "python-mpi4py")
+ (version "3.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "mpi4py" version))
+ (sha256
+ (base32
+ "1mzgd26dfv4vwbci8gq77ss9f0x26i9aqzq9b9vs9ndxhlnv0mxl"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'build 'mpi-setup
+ ,%openmpi-setup)
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; Skip BaseTestSpawn class (causes error 'ompi_dpm_dyn_init()
+ ;; failed --> Returned "Unreachable"' in chroot environment).
+ (substitute* "test/test_spawn.py"
+ (("unittest.skipMPI\\('openmpi\\(<3.0.0\\)'\\)")
+ "unittest.skipMPI('openmpi')"))
+ #t)))))
+ (inputs
+ `(("openmpi" ,openmpi)))
+ (home-page "https://bitbucket.org/mpi4py/mpi4py/")
+ (synopsis "Python bindings for the Message Passing Interface standard")
+ (description "MPI for Python (mpi4py) provides bindings of the Message
+Passing Interface (MPI) standard for the Python programming language, allowing
+any Python program to exploit multiple processors.
+
+mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an
+object oriented interface which closely follows MPI-2 C++ bindings. It
+supports point-to-point and collective communications of any picklable Python
+object as well as optimized communications of Python objects (such as NumPy
+arrays) that expose a buffer interface.")
+ (license bsd-3)))
diff --git a/gnu/packages/multiprecision.scm b/gnu/packages/multiprecision.scm
index 4f5eac16b9..71e1efcd8c 100644
--- a/gnu/packages/multiprecision.scm
+++ b/gnu/packages/multiprecision.scm
@@ -26,6 +26,7 @@
(define-module (gnu packages multiprecision)
#:use-module (guix licenses)
#:use-module (gnu packages)
+ #:use-module (gnu packages autotools)
#:use-module (gnu packages m4)
#:use-module (gnu packages gcc)
#:use-module (guix packages)
@@ -225,3 +226,68 @@ minor changes to the source code. In most cases only a few type statements
and (for Fortran-90 programs) read/write statements need to be changed. PSLQ
and numerical quadrature programs are included.")
(license bsd-3)))
+
+(define-public tomsfastmath
+ (package
+ (name "tomsfastmath")
+ (version "0.13.0")
+ (synopsis "Large integer arithmetic library")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/libtom/tomsfastmath/"
+ "releases/download/v" version "/"
+ "tfm-" (version-major+minor version) ".tar.bz2"))
+ (sha256
+ (base32
+ "01rlsvp6lskk2a0gfdi24ak5h8vdwi6kqbvbwjnmb92r0zrfdvwd"))
+ (patches (search-patches "tomsfastmath-constness.patch"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("libtool" ,libtool)))
+ (arguments
+ `(#:make-flags (list "-f" "makefile.shared"
+ (string-append "LIBPATH=" %output "/lib")
+ (string-append "INCPATH=" %output "/include")
+ "GROUP=root" "USER=root"
+ "CC=gcc")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure) ;no configuration
+ (replace 'check
+ (lambda* (#:key make-flags #:allow-other-keys)
+ (and (zero? (apply system* "make"
+ "stest" "test_standalone"
+ make-flags))
+ (zero? (system* "./stest"))
+ (zero? (system* "./test")))))
+ (add-before 'install 'install-nogroup
+ (lambda _
+ ;; Let permissions inherit from the current process
+ (substitute* "makefile.shared"
+ (("-g \\$\\(GROUP\\) -o \\$\\(USER\\)") ""))
+ #t))
+ (add-after 'install 'install-doc
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((docdir (string-append (assoc-ref outputs "out")
+ "/share/doc/tomsfastmath")))
+ (install-file "doc/tfm.pdf" docdir)
+ #t)))
+ (add-after 'install 'install-pc
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (pc-dir (string-append out "/lib/pkgconfig")))
+ (call-with-output-file "tomsfastmath.pc"
+ (lambda (port)
+ (format port "~
+Name: TomsFastMath
+Description: ~a
+Version: ~a
+Libs: -L~a/lib -ltfm~%"
+ ,synopsis ,version out)))
+ (install-file "tomsfastmath.pc" pc-dir)
+ #t))))))
+ (home-page "http://www.libtom.org/TomsFastMath/")
+ (description "TomsFastMath is a large integer library written in portable
+ISO C. It is a port of LibTomMath with optional support for inline assembler
+multiplies.")
+ (license public-domain)))
diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm
index 6b55e84fed..e1323582a2 100644
--- a/gnu/packages/ocaml.scm
+++ b/gnu/packages/ocaml.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2016, 2017 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2016-2018 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Peter Kreye <kreyepr@gmail.com>
@@ -120,7 +120,7 @@
"/lib/ocaml/site-lib"))
#:phases (modify-phases %standard-phases (delete 'configure))))
-(define-public ocaml
+(define-public ocaml-4.02
(package
(name "ocaml")
(version "4.02.3")
@@ -145,7 +145,8 @@
(files (list "lib/ocaml" "lib/ocaml/site-lib")))
(search-path-specification
(variable "CAML_LD_LIBRARY_PATH")
- (files (list "lib/ocaml/site-lib/stubslibs")))))
+ (files (list "lib/ocaml/site-lib/stubslibs"
+ "lib/ocaml/site-lib/stublibs")))))
(native-inputs
`(("perl" ,perl)
("pkg-config" ,pkg-config)))
@@ -228,7 +229,7 @@ functional, imperative and object-oriented styles of programming.")
(define-public ocaml-4.01
(package
- (inherit ocaml)
+ (inherit ocaml-4.02)
(version "4.01.0")
(source (origin
(method url-fetch)
@@ -240,7 +241,7 @@ functional, imperative and object-oriented styles of programming.")
(base32
"03d7ida94s1gpr3gadf4jyhmh5rrszd5s4m4z59daaib25rvfyv7"))))
(arguments
- (substitute-keyword-arguments (package-arguments ocaml)
+ (substitute-keyword-arguments (package-arguments ocaml-4.02)
((#:phases phases)
`(modify-phases ,phases
(replace 'build
@@ -256,10 +257,78 @@ functional, imperative and object-oriented styles of programming.")
(string-append
"TOPDIR=" (getcwd) "/.."))))))))))))
+(define-public ocaml-4.07
+ (package
+ (inherit ocaml-4.02)
+ (version "4.07.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://caml.inria.fr/pub/distrib/ocaml-"
+ (version-major+minor version)
+ "/ocaml-" version ".tar.xz"))
+ (sha256
+ (base32
+ "03wzkzv6w4rdiiva20g5amz0n4x75swpjl8d80468p6zm8hgfnzl"))))
+ (arguments
+ (substitute-keyword-arguments (package-arguments ocaml-4.02)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (delete 'prepare-socket-test)
+ (replace 'check
+ (lambda _
+ (with-directory-excursion "testsuite"
+ (invoke "make" "all"))
+ #t))))))))
+
+(define-public ocaml ocaml-4.07)
+
+(define-public ocamlbuild
+ (package
+ (name "ocamlbuild")
+ (version "0.13.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml/ocamlbuild/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1320cfkixs1xlng5av04pa5qjb3ynvi2kl3k1ngqzg5fpi29b0vr"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:test-target "test"
+ #:tests? #f; tests require findlib
+ #:make-flags
+ (list (string-append "OCAMLBUILD_PREFIX=" (assoc-ref %outputs "out"))
+ (string-append "OCAMLBUILD_BINDIR=" (assoc-ref %outputs "out")
+ "/bin")
+ (string-append "OCAMLBUILD_LIBDIR=" (assoc-ref %outputs "out")
+ "/lib/ocaml/site-lib")
+ (string-append "OCAMLBUILD_MANDIR=" (assoc-ref %outputs "out")
+ "/share/man"))
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'bootstrap)
+ (delete 'configure)
+ (add-before 'build 'findlib-environment
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out")))
+ (setenv "OCAMLFIND_DESTDIR" (string-append out "/lib/ocaml/site-lib"))
+ (setenv "OCAMLFIND_LDCONF" "ignore")
+ #t))))))
+ (native-inputs
+ `(("ocaml" ,ocaml)))
+ (home-page "https://github.com/ocaml/ocamlbuild")
+ (synopsis "OCaml build tool")
+ (description "OCamlbuild is a generic build tool, that has built-in rules
+ for building OCaml library and programs.")
+ (license license:lgpl2.1+)))
+
(define-public opam
(package
(name "opam")
- (version "1.2.2")
+ (version "2.0.0")
(source (origin
(method url-fetch)
;; Use the '-full' version, which includes all the dependencies.
@@ -271,7 +340,7 @@ functional, imperative and object-oriented styles of programming.")
)
(sha256
(base32
- "004gwn6rbpcb53y3rpb3v23vk39rp2xmf0liyd5iy12ij8bigrhm"))))
+ "09gdpxiqmyr6z78l85d7pwhiwrycdi2xi1b2mafqr1sk9z5lzbcx"))))
(build-system gnu-build-system)
(arguments
'(;; Sometimes, 'make -jX' would fail right after ./configure with
@@ -321,7 +390,7 @@ Git-friendly development workflow.")
;; The 'LICENSE' file waives some requirements compared to LGPLv3.
(license license:lgpl3)))
-(define-public camlp4
+(define-public camlp4-4.02
(package
(name "camlp4")
(version "4.02+6")
@@ -334,9 +403,9 @@ Git-friendly development workflow.")
"0icdfzhsbgf89925gc8gl3fm8z2xzszzlib0v9dj5wyzkyv3a342"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system gnu-build-system)
- (native-inputs `(("ocaml" ,ocaml)
+ (native-inputs `(("ocaml" ,ocaml-4.02)
("which" ,which)))
- (inputs `(("ocaml" ,ocaml)))
+ (inputs `(("ocaml" ,ocaml-4.02)))
(arguments
'(#:tests? #f ;no documented test target
;; a race-condition will lead byte and native targets to mkdir _build
@@ -377,17 +446,42 @@ syntax of OCaml.")
;; against the library to be released under any terms.
(license license:lgpl2.0)))
+(define-public camlp4-4.07
+ (package
+ (inherit camlp4-4.02)
+ (name "camlp4")
+ (version "4.07+1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml/camlp4/archive/"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "143hhxv1i6aq413z0i1pynrjcfl2g5gnh5r3863v6h9z0riqknzc"))
+ (file-name (string-append name "-" version ".tar.gz"))))
+ (properties
+ `((ocaml4.02-variant . ,(delay camlp4-4.02))))
+ (native-inputs
+ `(("ocaml" ,ocaml-4.07)
+ ("ocamlbuild" ,ocamlbuild)
+ ("which" ,which)))
+ (inputs
+ `(("ocaml" ,ocaml-4.07)))))
+
+(define-public camlp4 camlp4-4.07)
+
(define-public camlp5
(package
(name "camlp5")
- (version "6.14")
+ (version "7.06")
(source (origin
(method url-fetch)
- (uri (string-append "http://camlp5.gforge.inria.fr/distrib/src/"
- name "-" version ".tgz"))
+ (uri (string-append "https://github.com/camlp5/camlp5/archive/rel"
+ (string-delete #\. version) ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1ql04iyvclpyy9805kpddc4ndjb5d0qg4shhi2fc6bixi49fvy89"))))
+ "08kr0h2rq3jh3kzqh5f6pr589bqw3y76z8k59ad2kdh50fjgp8xy"))))
(build-system gnu-build-system)
(inputs
`(("ocaml" ,ocaml)))
@@ -404,6 +498,11 @@ syntax of OCaml.")
(invoke "./configure"
"--prefix" out
"--mandir" mandir))))
+ (add-before 'build 'fix-/bin-references
+ (lambda _
+ (substitute* "config/Makefile"
+ (("/bin/rm") "rm"))
+ #t))
(replace 'build
(lambda _
(invoke "make" "-j" (number->string
@@ -427,17 +526,19 @@ concrete syntax of the language (Quotations, Syntax Extensions).")
(define-public hevea
(package
(name "hevea")
- (version "2.28")
+ (version "2.32")
(source (origin
(method url-fetch)
(uri (string-append "http://hevea.inria.fr/old/"
name "-" version ".tar.gz"))
(sha256
(base32
- "14fns13wlnpiv9i05841kvi3cq4b9v2sw5x3ff6ziws28q701qnd"))))
+ "1s4yqphfcr1pf5mcj5c84mvmd107k525iiym5jdwsxz0ka0ccmfy"))))
(build-system gnu-build-system)
(inputs
`(("ocaml" ,ocaml)))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)))
(arguments
`(#:tests? #f ; no test suite
#:make-flags (list (string-append "PREFIX=" %output))
@@ -455,6 +556,50 @@ concrete syntax of the language (Quotations, Syntax Extensions).")
written in Objective Caml.")
(license license:qpl)))
+(define-public ocaml-num
+ (package
+ (name "ocaml-num")
+ (version "1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml/num/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xlkd0svc0mgq5s7nrm2rjrsvg15i9wxqkc1kvwjp6sv8vv8bb04"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'build 'fix-makefile
+ (lambda* (#:key outputs #:allow-other-keys)
+ ;; This package supposes we install to the same directory as
+ ;; the ocaml package.
+ (substitute* "src/META"
+ (("\"\\^\"") (string-append "\"" (assoc-ref outputs "out")
+ "/lib/ocaml/site-lib\"")))
+ (substitute* "src/Makefile"
+ (("\\) \\$\\(STDLIBDIR\\)")
+ (string-append ") " (assoc-ref outputs "out")
+ "/lib/ocaml/site-lib")))
+ #t))
+ (add-after 'install 'fix-stubslib
+ (lambda* (#:key outputs #:allow-other-keys)
+ (format #t "~a~%" (find-files "." ".*.so"))
+ (let ((stubdir (string-append (assoc-ref outputs "out")
+ "/lib/ocaml/site-lib")))
+ (mkdir-p stubdir)
+ (install-file "src/dllnums.so" stubdir))
+ #t)))))
+ (home-page "https://github.com/ocaml/num")
+ (synopsis "Arbitrary-precision integer and rational arithmetic")
+ (description "OCaml-Num contains the legacy Num library for
+arbitrary-precision integer and rational arithmetic that used to be part of
+the OCaml core distribution.")
+ (license license:lgpl2.1+))); with linking exception
+
(define-public coq
(package
(name "coq")
@@ -478,7 +623,8 @@ written in Objective Caml.")
(inputs
`(("lablgtk" ,lablgtk)
("python" ,python-2)
- ("camlp5" ,camlp5)))
+ ("camlp5" ,camlp5)
+ ("ocaml-num" ,ocaml-num)))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -598,7 +744,7 @@ provers.")
(define-public emacs-tuareg
(package
(name "emacs-tuareg")
- (version "2.0.10")
+ (version "2.2.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/ocaml/tuareg/archive/"
@@ -606,7 +752,7 @@ provers.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1r2smclcs63n74lcyckbp90j09wyjdngn816cqzfkw54iwh3hd7q"))))
+ "1ynpfc170f9jqx49biji9npfkvfpflbm29xf24wc7fnxxayr49ig"))))
(build-system gnu-build-system)
(native-inputs `(("emacs" ,emacs-minimal)
("opam" ,opam)))
@@ -650,6 +796,8 @@ Emacs.")
(build-system gnu-build-system)
(inputs
`(("ocaml" ,ocaml)))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)))
(arguments
`(#:parallel-build? #f ; Parallel build causes failure
#:tests? #f ; No check target
@@ -660,6 +808,8 @@ Emacs.")
(let ((out (assoc-ref outputs "out")))
(setenv "PREFIX" out))
#t)))))
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-menhir))))
(home-page "http://gallium.inria.fr/~fpottier/menhir")
(synopsis "Parser generator")
(description "Menhir is a parser generator. It turns high-level grammar
@@ -671,17 +821,26 @@ Knuth’s LR(1) parser construction technique.")
;; are QPL licensed.
(license (list license:gpl2+ license:qpl))))
+(define-public ocaml4.02-menhir
+ (package
+ (inherit ocaml-menhir)
+ (name "ocaml4.02-menhir")
+ (inputs `(("ocaml" ,ocaml-4.02)))
+ (native-inputs '())))
+
(define-public lablgtk
(package
(name "lablgtk")
- (version "2.18.5")
+ (version "2.18.6")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri name version 1627))
+ (uri (ocaml-forge-uri name version 1726))
(sha256
(base32
- "0cyj6sfdvzx8hw7553lhgwc0krlgvlza0ph3dk9gsxy047dm3wib"))))
+ "1y38fdvswy6hmppm65qvgdk4pb3ghhnvz7n4ialf46340r1s5p2d"))))
(build-system gnu-build-system)
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-lablgtk))))
(native-inputs
`(("camlp4" ,camlp4)
("ocaml" ,ocaml)
@@ -732,6 +891,23 @@ libglade (and it an generate OCaml code from .glade files),
libpanel, librsvg and quartz.")
(license license:lgpl2.1)))
+(define-public ocaml4.02-lablgtk
+ (package
+ (inherit lablgtk)
+ (name "ocaml4.02-lablgtk")
+ (version "2.18.5")
+ (source (origin
+ (method url-fetch)
+ (uri (ocaml-forge-uri name version 1627))
+ (sha256
+ (base32
+ "0cyj6sfdvzx8hw7553lhgwc0krlgvlza0ph3dk9gsxy047dm3wib"))))
+ (native-inputs
+ `(("camlp4" ,camlp4-4.02)
+ ("ocaml" ,ocaml-4.02)
+ ("findlib" ,ocaml4.02-findlib)
+ ("pkg-config" ,pkg-config)))))
+
(define-public unison
(package
(name "unison")
@@ -792,12 +968,13 @@ libpanel, librsvg and quartz.")
(outputs '("out"
"doc")) ; 1.9 MiB of documentation
(native-inputs
- `(("ocaml" ,ocaml)
+ `(("ocaml" ,ocaml-4.02)
;; For documentation
("ghostscript" ,ghostscript)
("texlive" ,texlive)
("hevea" ,hevea)
- ("lynx" ,lynx)))
+ ("lynx" ,lynx)
+ ("which" ,which)))
(arguments
`(#:parallel-build? #f
#:parallel-tests? #f
@@ -827,6 +1004,14 @@ libpanel, librsvg and quartz.")
(let ((doc (string-append (assoc-ref outputs "doc")
"/share/doc/unison")))
(mkdir-p doc)
+ ;; This is a workaround to prevent a build failure. Running
+ ;; make docs somehow allows it to pass, but the generated
+ ;; documentation is not pretty.
+ (catch #t
+ (lambda _
+ (invoke "make" "docs"
+ "TEXDIRECTIVES=\\\\draftfalse"))
+ (lambda _ #t))
;; This file needs write-permissions, because it's
;; overwritten by 'docs' during documentation generation.
(chmod "src/strings.ml" #o600)
@@ -856,14 +1041,14 @@ to the other.")
(define-public ocaml-findlib
(package
(name "ocaml-findlib")
- (version "1.7.3")
+ (version "1.8.0")
(source (origin
(method url-fetch)
(uri (string-append "http://download.camlcity.org/download/"
"findlib" "-" version ".tar.gz"))
(sha256
(base32
- "12xx8si1qv3xz90qsrpazjjk4lc1989fzm97rsmc4diwla7n15ni"))))
+ "1b97zqjdriqd2ikgh4rmqajgxwdwn013riji5j53y3xvcmnpsyrb"))))
(build-system gnu-build-system)
(native-inputs
`(("camlp4" ,camlp4)
@@ -912,6 +1097,15 @@ compilation and linkage, there are new frontends of the various OCaml
compilers that can directly deal with packages.")
(license license:x11)))
+(define-public ocaml4.02-findlib
+ (package
+ (inherit ocaml-findlib)
+ (name "ocaml4.02-findlib")
+ (native-inputs
+ `(("camlp4" ,camlp4-4.02)
+ ("m4" ,m4)
+ ("ocaml" ,ocaml-4.02)))))
+
(define-public ocaml4.01-findlib
(package
(inherit ocaml-findlib)
@@ -933,7 +1127,8 @@ compilers that can directly deal with packages.")
"03ifp9hjcxg4m5j190iy373jcn4039d3vy10kmd8p4lfciwzwc1f"))))
(build-system ocaml-build-system)
(native-inputs
- `(("libxml2" ,libxml2))) ; for xmllint
+ `(("libxml2" ,libxml2) ; for xmllint
+ ("ocamlbuild" ,ocamlbuild)))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -947,6 +1142,9 @@ other XUnit testing frameworks.")
(define-public ocaml4.01-ounit
(package-with-ocaml4.01 ocaml-ounit))
+(define-public ocaml4.02-ounit
+ (package-with-ocaml4.02 ocaml-ounit))
+
(define-public camlzip
(package
(name "camlzip")
@@ -1007,19 +1205,23 @@ files in these formats.")
(base32
"0syh72jk9s0qwjmmfrkqchaj98m020ii082jn38pwnmb6v3p02wk")))))))
+(define-public ocaml4.02-camlzip
+ (package-with-ocaml4.02 camlzip))
+
(define-public ocamlmod
(package
(name "ocamlmod")
- (version "0.0.8")
+ (version "0.0.9")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri name version 1544))
+ (uri (ocaml-forge-uri name version 1702))
(sha256
(base32
- "1w0w8lfyymvk300dv13gvhrddpcyknvyp4g2yvq2vaw7khkhjs9g"))))
+ "0cgp9qqrq7ayyhddrmqmq1affvfqcn722qiakjq4dkywvp67h4aa"))))
(build-system ocaml-build-system)
(native-inputs
- `(("ounit" ,ocaml-ounit)))
+ `(("ounit" ,ocaml-ounit)
+ ("ocamlbuild" ,ocamlbuild)))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -1030,6 +1232,9 @@ files in these formats.")
(description "Generate modules from OCaml source files.")
(license license:lgpl2.1+))) ; with an exception
+(define-public ocaml4.02-ocamlmod
+ (package-with-ocaml4.02 ocamlmod))
+
(define-public ocaml-zarith
(package
(name "ocaml-zarith")
@@ -1060,6 +1265,9 @@ over big integers. Small integers are represented as Caml unboxed integers,
for speed and space economy.")
(license license:lgpl2.1+))) ; with an exception
+(define-public ocaml4.02-zarith
+ (package-with-ocaml4.02 ocaml-zarith))
+
(define-public ocaml-frontc
(package
(name "ocaml-frontc")
@@ -1073,7 +1281,9 @@ for speed and space economy.")
"16dz153s92dgbw1rrfwbhscy73did87kfmjwyh3qpvs748h1sc4g"))))
(build-system ocaml-build-system)
(arguments
- `(#:phases
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:phases
(modify-phases %standard-phases
(delete 'configure)
(add-after 'install 'install-meta
@@ -1116,7 +1326,8 @@ GNU CC attributes. It provides also a C pretty printer as an example of use.")
"1zs1pg5cb1iry554v3cdmmiglsrwmsqa9x8zxmzb118fnk5d3ha6"))))
(build-system ocaml-build-system)
(native-inputs
- `(("ounit" ,ocaml-ounit)))
+ `(("ounit" ,ocaml-ounit)
+ ("ocamlbuild" ,ocamlbuild)))
(home-page "https://github.com/c-cube/qcheck")
(synopsis "QuickCheck inspired property-based testing for OCaml")
(description "QuickCheck inspired property-based testing for OCaml. This
@@ -1125,6 +1336,9 @@ generated instances of the type. It provides combinators for generating
instances and printing them.")
(license license:lgpl3+)))
+(define-public ocaml4.02-qcheck
+ (package-with-ocaml4.02 ocaml-qcheck))
+
(define-public ocaml-qtest
(package
(name "ocaml-qtest")
@@ -1139,7 +1353,7 @@ instances and printing them.")
"1ff4if64mc9c7wmhjdgnlnh6k6a713piqzr4043zzj4s5pw7smxk"))))
(build-system ocaml-build-system)
(native-inputs
- `(("findlib" ,ocaml-findlib)))
+ `(("ocamlbuild" ,ocamlbuild)))
(propagated-inputs
`(("ounit" ,ocaml-ounit)
("qcheck" ,ocaml-qcheck)))
@@ -1161,6 +1375,9 @@ to use -- to sophisticated random generation of test cases.")
(define-public ocaml4.01-qtest
(package-with-ocaml4.01 ocaml-qtest))
+(define-public ocaml4.02-qtest
+ (package-with-ocaml4.02 ocaml-qtest))
+
(define-public ocaml-stringext
(package
(name "ocaml-stringext")
@@ -1175,7 +1392,8 @@ to use -- to sophisticated random generation of test cases.")
"19g6lfn03iki9f8h91hi0yiqn0b3wkxyq08b3y23wgv6jw6mssfh"))))
(build-system ocaml-build-system)
(native-inputs
- `(("qtest" ,ocaml-qtest)))
+ `(("ocamlbuild" ,ocamlbuild)
+ ("qtest" ,ocaml-qtest)))
(home-page "https://github.com/rgrinberg/stringext")
(synopsis "Extra string functions for OCaml")
(description "Provides a single module named Stringext that provides a grab
@@ -1185,17 +1403,21 @@ full_split, cut, rcut, etc..")
;; where it says `mit'.
(license license:expat)))
+(define-public ocaml4.02-stringext
+ (package-with-ocaml4.02 ocaml-stringext))
(define-public ocaml-bisect
(package
(name "ocaml-bisect")
- (version "1.3")
+ (version "1.3.1")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri "bisect" version 1051))
+ (uri (string-append "https://github.com/gasche/bisect/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0kcg2rh0qlkfpbv3nhcb75n62b04gbrz0zasq15ynln91zd5qrg0"))
+ "0p67fppk5ifb63b00kxwrb1xg75hrqhknng3bsdyw3gxxqyjlpmx"))
(patches
(search-patches
"ocaml-bisect-fix-camlp4-in-another-directory.patch"))))
@@ -1203,6 +1425,7 @@ full_split, cut, rcut, etc..")
(native-inputs
`(("camlp4" ,camlp4)
("libxml2" ,libxml2)
+ ("ocamlbuild" ,ocamlbuild)
("which" ,which)))
(propagated-inputs
`(("camlp4" ,camlp4)))
@@ -1215,9 +1438,11 @@ full_split, cut, rcut, etc..")
#:phases
(modify-phases %standard-phases
(replace 'configure
- (lambda* (#:key outputs #:allow-other-keys)
- (zero? (system* "./configure" "-prefix"
- (assoc-ref outputs "out"))))))))
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (invoke "./configure" "-prefix" (assoc-ref outputs "out")
+ "-ocaml-prefix" (assoc-ref inputs "ocaml")
+ "-camlp4-prefix" (assoc-ref inputs "camlp4"))
+ #t)))))
(home-page "http://bisect.x9c.fr")
(synopsis "Code coverage tool for the OCaml language")
(description "Bisect is a code coverage tool for the OCaml language. It is
@@ -1225,46 +1450,260 @@ a camlp4-based tool that allows to instrument your application before running
tests. After application execution, it is possible to generate a report in HTML
format that is the replica of the application source code annotated with code
coverage information.")
- (properties `((ocaml4.01-variant . ,(delay ocaml4.01-bisect))))
+ (properties
+ `((ocaml4.01-variant . ,(delay ocaml4.01-bisect))
+ (ocaml4.02-variant . ,(delay ocaml4.02-bisect))))
(license license:gpl3+)))
(define-public ocaml4.01-bisect
(let ((base (package-with-ocaml4.01 (strip-ocaml4.01-variant ocaml-bisect))))
(package
(inherit base)
+ (version "1.3")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/gasche/bisect/archive/"
+ version ".tar.gz"))
+ (file-name (string-append "ocaml-bisect-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1ip49jqf0kkbrqf8qspmfjbg9ap9fhvjkg718myzix88dg5rv8d4"))))
(arguments
`(#:ocaml ,ocaml-4.01
- ;; Camlp4 is included with OCaml 4.01, so do not include it as a
- ;; separate input.
- ,@(strip-keyword-arguments '(#:make-flags) (package-arguments base))))
+ ,@(substitute-keyword-arguments (package-arguments ocaml-bisect)
+ ((#:make-flags flags)
+ `(list "all"))
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (replace 'configure
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (invoke "./configure"
+ "-ocaml-prefix" (assoc-ref inputs "ocaml"))
+ #t)))))))
(native-inputs `(,@(alist-delete "camlp4" (package-native-inputs base))))
(propagated-inputs
`(,@(alist-delete "camlp4" (package-propagated-inputs base)))))))
+(define-public ocaml4.02-bisect
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant ocaml-bisect))))
+ (package
+ (inherit base)
+ (native-inputs
+ `(("camlp4" ,camlp4-4.02)
+ ("libxml2" ,libxml2)
+ ("which" ,which)))
+ (propagated-inputs
+ `(("camlp4" ,camlp4-4.02))))))
+
+(define-public dune
+ (package
+ (name "dune")
+ (version "1.2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml/dune/releases/"
+ "download/" version "/dune-" version ".tbz"))
+ (sha256
+ (base32
+ "00c5dbm4hkdapc2i7pg07b2lj8sv6ly38qr7zid58cdmbmzq21z9"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:tests? #f; require odoc
+ #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
+ #:phases
+ (modify-phases %standard-phases
+ (replace 'configure
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "./configure")
+ #t)))))
+ (home-page "https://github.com/ocaml/dune")
+ (synopsis "OCaml build system")
+ (description "Dune is a build system that was designed to simplify the
+release of Jane Street packages. It reads metadata from @file{dune} files
+following a very simple s-expression syntax.")
+ (license license:expat)))
+
+(define-public ocaml-migrate-parsetree
+ (package
+ (name "ocaml-migrate-parsetree")
+ (version "1.1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml-ppx/"
+ "ocaml-migrate-parsetree/releases/download/v"
+ version "/ocaml-migrate-parsetree-"
+ version ".tbz"))
+ (sha256
+ (base32
+ "01zjp1q4hryqaxv4apkjd868fycz2kf887r6lkb6x2a545h1lh7f"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "jbuilder" "build" "@install")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "jbuilder" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (propagated-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("ocaml-result" ,ocaml-result)))
+ (native-inputs
+ `(("dune" ,dune)))
+ (home-page "https://github.com/ocaml-ppx/ocaml-migrate-parsetree")
+ (synopsis "OCaml parsetree convertor")
+ (description "This library converts between parsetrees of different OCaml
+versions. For each version, there is a snapshot of the parsetree and conversion
+functions to the next and/or previous version.")
+ (license license:lgpl2.1+)))
+
+(define-public ocaml-ppx-tools-versioned
+ (package
+ (name "ocaml-ppx-tools-versioned")
+ (version "5.2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml-ppx/"
+ "ppx_tools_versioned/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1x2xfjpkzbcz4rza1d7gh3ipliw6jqfcklbsln82v3561qgkqgmh"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "dune" "build" "@install")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (native-inputs
+ `(("dune" ,dune)))
+ (propagated-inputs
+ `(("ocaml-migrate-parsetree" ,ocaml-migrate-parsetree)))
+ (home-page "https://github.com/let-def/ppx_tools_versioned")
+ (synopsis "Variant of ppx_tools")
+ (description "This package is a variant of ppx_tools based on
+ocaml-migrate-parsetree")
+ (license license:expat)))
+
+(define-public ocaml-ppx-tools-versioned
+ (package
+ (name "ocaml-ppx-tools-versioned")
+ (version "5.2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ocaml-ppx/"
+ "ppx_tools_versioned/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1x2xfjpkzbcz4rza1d7gh3ipliw6jqfcklbsln82v3561qgkqgmh"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "dune" "build" "@install")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (native-inputs
+ `(("dune" ,dune)))
+ (propagated-inputs
+ `(("ocaml-migrate-parsetree" ,ocaml-migrate-parsetree)))
+ (home-page "https://github.com/let-def/ppx_tools_versioned")
+ (synopsis "Variant of ppx_tools")
+ (description "This package is a variant of ppx_tools based on
+ocaml-migrate-parsetree")
+ (license license:expat)))
+
(define-public ocaml-bitstring
(package
(name "ocaml-bitstring")
- (version "2.1.1")
+ (version "3.1.0")
(source (origin
(method url-fetch)
- (uri (string-append "https://github.com/xguerin/bitstring"
- "/archive/v" version ".tar.gz"))
+ (uri (string-append "https://bitbucket.org/thanatonauts/bitstring/"
+ "get/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0vy8ibrxccii1jbsk5q6yh1kxjigqvi7lhhcmizvd5gfhf7mfyc8"))
- (patches (search-patches "ocaml-bitstring-fix-configure.patch"))))
+ "15jjk2pq1vx311gl49s5ag6x5y0654x35w75z07g7kr2q334hqps"))))
(build-system ocaml-build-system)
(native-inputs
`(("camlp4" ,camlp4)
("time" ,time)
("autoconf" ,autoconf)
("automake" ,automake)
- ("bisect" ,ocaml-bisect)))
+ ("bisect" ,ocaml-bisect)
+ ("dune" ,dune)))
(propagated-inputs
- `(("camlp4" ,camlp4)))
+ `(("camlp4" ,camlp4)
+ ("ocaml-ppx-tools-versioned" ,ocaml-ppx-tools-versioned)))
(arguments
- `(#:configure-flags
+ `(#:tests? #f; Tests fail to build
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "jbuilder" "build" "@install")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-bitstring))))
+ (home-page "https://github.com/xguerin/bitstring")
+ (synopsis "Bitstrings and bitstring matching for OCaml")
+ (description "Adds Erlang-style bitstrings and matching over bitstrings as
+a syntax extension and library for OCaml. You can use this module to both parse
+and generate binary formats, files and protocols. Bitstring handling is added
+as primitives to the language, making it exceptionally simple to use and very
+powerful.")
+ (license license:isc)))
+
+(define-public ocaml4.02-bitstring
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant ocaml-bitstring))))
+ (package
+ (inherit base)
+ (version "2.1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/xguerin/bitstring"
+ "/archive/v" version ".tar.gz"))
+ (file-name (string-append "ocaml-bitstring-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0vy8ibrxccii1jbsk5q6yh1kxjigqvi7lhhcmizvd5gfhf7mfyc8"))
+ (patches (search-patches "ocaml-bitstring-fix-configure.patch"))))
+ (arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:configure-flags
(list "CAMLP4OF=camlp4of" "--enable-coverage")
#:make-flags
(list (string-append "BISECTLIB="
@@ -1280,14 +1719,6 @@ coverage information.")
"$(BISECTLIB)/bisect"))
#:phases
(modify-phases %standard-phases
- (add-before 'configure 'fix-configure
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "Makefile.in"
- (("@abs_top_builddir@")
- (string-append "@abs_top_builddir@:" (getenv "LIBRARY_PATH"))))
- (substitute* "configure"
- (("-/bin/sh") (string-append "-" (assoc-ref inputs "bash")
- "/bin/sh")))))
(add-after 'install 'link-lib
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
@@ -1297,15 +1728,24 @@ coverage information.")
"/lib/ocaml/site-lib/bitstring")))
(mkdir-p stubs)
(symlink (string-append lib "/dllbitstring.so")
- (string-append stubs "/dllbitstring.so"))))))))
- (home-page "https://github.com/xguerin/bitstring")
- (synopsis "Bitstrings and bitstring matching for OCaml")
- (description "Adds Erlang-style bitstrings and matching over bitstrings as
-a syntax extension and library for OCaml. You can use this module to both parse
-and generate binary formats, files and protocols. Bitstring handling is added
-as primitives to the language, making it exceptionally simple to use and very
-powerful.")
- (license license:isc)))
+ (string-append stubs "/dllbitstring.so")))
+ #t))
+ (add-before 'configure 'fix-configure
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "Makefile.in"
+ (("@abs_top_builddir@")
+ (string-append "@abs_top_builddir@:" (getenv "LIBRARY_PATH"))))
+ (substitute* "configure"
+ (("-/bin/sh") (string-append "-" (assoc-ref inputs "bash")
+ "/bin/sh"))))))))
+ (native-inputs
+ `(("camlp4" ,camlp4-4.02)
+ ("time" ,time)
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("bisect" ,ocaml4.02-bisect)))
+ (propagated-inputs
+ `(("camlp4" ,camlp4-4.02))))))
(define-public ocaml-result
(package
@@ -1331,6 +1771,9 @@ powerful.")
staying compatible with older version of OCaml should use the Result module
defined in this library.")
(license license:bsd-3)))
+
+(define-public ocaml4.02-result
+ (package-with-ocaml4.02 ocaml-result))
(define-public ocaml-topkg
(package
@@ -1345,7 +1788,8 @@ defined in this library.")
"18rrh6fmf708z7dd30amljmcgaypj3kk49jrmrj68r4wnw8004j8"))))
(build-system ocaml-build-system)
(native-inputs
- `(("opam" ,opam)))
+ `(("opam" ,opam)
+ ("ocamlbuild" ,ocamlbuild)))
(propagated-inputs
`(("result" ,ocaml-result)))
(arguments
@@ -1361,6 +1805,9 @@ provides an API to describe the files a package installs in a given build
configuration and to specify information about the package's distribution,
creation and publication procedures.")
(license license:isc)))
+
+(define-public ocaml4.02-topkg
+ (package-with-ocaml4.02 ocaml-topkg))
(define-public ocaml-rresult
(package
@@ -1375,7 +1822,8 @@ creation and publication procedures.")
"1xxycxhdhaq8p9vhwi93s2mlxjwgm44fcxybx5vghzgbankz9yhm"))))
(build-system ocaml-build-system)
(native-inputs
- `(("opam" ,opam)))
+ `(("opam" ,opam)
+ ("ocamlbuild" ,ocamlbuild)))
(propagated-inputs
`(("topkg" ,ocaml-topkg)))
(arguments
@@ -1392,6 +1840,9 @@ to operate on the result type available from OCaml 4.03 in the standard
library.")
(license license:isc)))
+(define-public ocaml4.02-rresult
+ (package-with-ocaml4.02 ocaml-rresult))
+
(define-public ocaml-sqlite3
(package
(name "ocaml-sqlite3")
@@ -1407,7 +1858,8 @@ library.")
"14c1nir7c6bivajg0vyx853y7la7r5d25g1v5hjb2wfi73r15p1m"))))
(build-system ocaml-build-system)
(native-inputs
- `(("pkg-config" ,pkg-config)))
+ `(("ocamlbuild" ,ocamlbuild)
+ ("pkg-config" ,pkg-config)))
(inputs
`(("sqlite" ,sqlite)))
(home-page "https://mmottl.github.io/sqlite3-ocaml")
@@ -1424,6 +1876,9 @@ coexistence with the old (version 2) SQLite and its OCaml wrapper
(define-public ocaml4.01-sqlite3
(package-with-ocaml4.01 ocaml-sqlite3))
+(define-public ocaml4.02-sqlite3
+ (package-with-ocaml4.02 ocaml-sqlite3))
+
(define-public ocaml-csv
(package
(name "ocaml-csv")
@@ -1439,6 +1894,8 @@ coexistence with the old (version 2) SQLite and its OCaml wrapper
(base32
"0rv7x843vn6scxj87hzl01yqrl26rc27lr8s7z6rp9vs745g05zj"))))
(build-system ocaml-build-system)
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)))
(home-page "https://github.com/Chris00/ocaml-csv")
(synopsis "Pure OCaml functions to read and write CSV")
(description
@@ -1451,6 +1908,9 @@ manipulate such data.")
(define-public ocaml4.01-csv
(package-with-ocaml4.01 ocaml-csv))
+(define-public ocaml4.02-csv
+ (package-with-ocaml4.02 ocaml-csv))
+
(define-public ocaml-mtime
(package
(name "ocaml-mtime")
@@ -1464,7 +1924,8 @@ manipulate such data.")
"1hfx4ny2dkw6jf3jppz0640dafl5xgn8r2si9kpwzhmibal8qrah"))))
(build-system ocaml-build-system)
(native-inputs
- `(("opam" ,opam)))
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
(propagated-inputs
`(("topkg" ,ocaml-topkg)))
(arguments
@@ -1480,6 +1941,9 @@ manipulate such data.")
spans without being subject to operating system calendar time adjustments.")
(license license:isc)))
+(define-public ocaml4.02-mtime
+ (package-with-ocaml4.02 ocaml-mtime))
+
(define-public ocaml-cmdliner
(package
(name "ocaml-cmdliner")
@@ -1493,7 +1957,8 @@ spans without being subject to operating system calendar time adjustments.")
"0hdxlkgiwjml9dpaa80282a8350if7mc1m6yz2mrd7gci3fszykx"))))
(build-system ocaml-build-system)
(native-inputs
- `(("opam" ,opam)))
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
(arguments
`(#:tests? #f
#:build-flags '("native=true" "native-dynlink=true")
@@ -1510,6 +1975,9 @@ generation. It supports programs with single or multiple commands and respects
most of the POSIX and GNU conventions.")
(license license:bsd-3)))
+(define-public ocaml4.02-cmdliner
+ (package-with-ocaml4.02 ocaml-cmdliner))
+
(define-public ocaml-fmt
(package
(name "ocaml-fmt")
@@ -1522,10 +1990,13 @@ most of the POSIX and GNU conventions.")
(sha256 (base32
"16y7ibndnairb53j8a6qgipyqwjxncn4pl9jiw5bxjfjm59108px"))))
(build-system ocaml-build-system)
- (native-inputs `(("opam" ,opam)
- ("topkg" ,ocaml-topkg)))
- (propagated-inputs `(("result" ,ocaml-result)
- ("cmdliner" ,ocaml-cmdliner)))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)
+ ("topkg" ,ocaml-topkg)))
+ (propagated-inputs
+ `(("result" ,ocaml-result)
+ ("cmdliner" ,ocaml-cmdliner)))
(arguments `(#:tests? #f
#:build-flags (list "build" "--with-base-unix" "true"
"--with-cmdliner" "true")
@@ -1538,6 +2009,9 @@ most of the POSIX and GNU conventions.")
functions.")
(license license:isc)))
+(define-public ocaml4.02-fmt
+ (package-with-ocaml4.02 ocaml-fmt))
+
(define-public ocaml-astring
(package
(name "ocaml-astring")
@@ -1550,13 +2024,16 @@ functions.")
(sha256 (base32
"0ixjwc3plrljvj24za3l9gy0w30lsbggp8yh02lwrzw61ls4cri0"))))
(build-system ocaml-build-system)
- (native-inputs `(("opam" ,opam)
- ("topkg" ,ocaml-topkg)))
- (arguments `(#:tests? #f
- #:build-flags (list "build")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)
+ ("topkg" ,ocaml-topkg)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
(home-page "http://erratique.ch/software/astring")
(synopsis "Alternative String module for OCaml")
(description "Astring exposes an alternative String module for OCaml. This
@@ -1568,6 +2045,9 @@ adds a few missing functions and fully exploits OCaml's newfound string
immutability.")
(license license:isc)))
+(define-public ocaml4.02-astring
+ (package-with-ocaml4.02 ocaml-astring))
+
(define-public ocaml-alcotest
(package
(name "ocaml-alcotest")
@@ -1580,15 +2060,19 @@ immutability.")
(base32
"0g5lzk0gpfx4q8hyhr460gr4lab5wakfxsmhfwvb3yinxwzs95gc"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "build")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)
- ("topkg" ,ocaml-topkg)))
- (propagated-inputs `(("fmt" ,ocaml-fmt)
- ("astring" ,ocaml-astring)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)
+ ("topkg" ,ocaml-topkg)))
+ (propagated-inputs
+ `(("fmt" ,ocaml-fmt)
+ ("astring" ,ocaml-astring)))
(home-page "https://github.com/mirage/alcotest")
(synopsis "Lightweight OCaml test framework")
(description "Alcotest exposes simple interface to perform unit tests. It
@@ -1599,25 +2083,44 @@ displayed at the end of the run (with the full logs ready to inspect), with a
simple (yet expressive) query language to select the tests to run.")
(license license:isc)))
+(define-public ocaml4.02-alcotest
+ (package-with-ocaml4.02 ocaml-alcotest))
+
(define-public ocaml-ppx-tools
(package
(name "ocaml-ppx-tools")
- (version "5.0+4.02.0")
+ (version "5.1+4.06.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/alainfrisch/ppx_tools/archive/"
version ".tar.gz"))
(sha256 (base32
- "0rjg4rngi8k9873z4zq95zn9hj8qyw1vcrf11y15aqasfpqq16rc"))))
+ "0mncpy9v2mcjgnj7s2vqpp2b1ixv54djicfx66ic9wny9d202gj1"))))
(build-system ocaml-build-system)
- (arguments `(#:phases (modify-phases %standard-phases (delete 'configure))
- #:tests? #f))
+ (arguments
+ `(#:phases (modify-phases %standard-phases (delete 'configure))
+ #:tests? #f))
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-ppx-tools))))
(home-page "https://github.com/alainfrisch/ppx_tools")
(synopsis "Tools for authors of ppx rewriters and other syntactic tools")
(description "Tools for authors of ppx rewriters and other syntactic tools.")
(license license:expat)))
+(define-public ocaml4.02-ppx-tools
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant ocaml-ppx-tools))))
+ (package
+ (inherit base)
+ (version "5.0+4.02.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/alainfrisch/ppx_tools/archive/"
+ version ".tar.gz"))
+ (sha256 (base32
+ "0rjg4rngi8k9873z4zq95zn9hj8qyw1vcrf11y15aqasfpqq16rc")))))))
+
(define-public ocaml-react
(package
(name "ocaml-react")
@@ -1630,12 +2133,15 @@ simple (yet expressive) query language to select the tests to run.")
(sha256 (base32
"0knhgbngphv5sp1yskfd97crf169qhpc0igr6w7vqw0q36lswyl8"))))
(build-system ocaml-build-system)
- (native-inputs `(("opam" ,opam)))
- (arguments `(#:tests? #f
- #:build-flags (list "native=true" "native-dynlink=true")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "native=true" "native-dynlink=true")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
(home-page "http://erratique.ch/software/react")
(synopsis "Declarative events and signals for OCaml")
(description "React is an OCaml module for functional reactive programming
@@ -1644,6 +2150,9 @@ events and signals. React doesn't define any primitive event or signal, it
lets the client choose the concrete timeline.")
(license license:bsd-3)))
+(define-public ocaml4.02-react
+ (package-with-ocaml4.02 ocaml-react))
+
(define-public ocaml-ssl
(package
(name "ocaml-ssl")
@@ -1658,20 +2167,23 @@ lets the client choose the concrete timeline.")
(sha256 (base32
"0fviq8xhp3qk7pmkl7knchywsipxgb7p0z489hj8qnf2sx8xzdmy"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:make-flags (list "OCAMLFIND_LDCONF=ignore")
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'bootstrap
- (lambda* (#:key #:allow-other-keys)
- (system* "sh" "bootstrap")
- (substitute* "src/OCamlMakefile"
- (("/bin/sh") (which "bash")))
- (substitute* "configure"
- (("/bin/sh") (which "bash"))))))))
- (native-inputs `(("autoconf" ,autoconf)
- ("automake" ,automake)
- ("which" ,which)))
+ (arguments
+ `(#:tests? #f
+ #:make-flags (list "OCAMLFIND_LDCONF=ignore")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'bootstrap
+ (lambda* (#:key #:allow-other-keys)
+ (system* "sh" "bootstrap")
+ (substitute* "src/OCamlMakefile"
+ (("/bin/sh") (which "bash")))
+ (substitute* "configure"
+ (("/bin/sh") (which "bash")))
+ #t)))))
+ (native-inputs
+ `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("which" ,which)))
(propagated-inputs `(("openssl" ,openssl)))
(home-page "https://github.com/savonet/ocaml-ssl/")
(synopsis "OCaml bindings for OpenSSL")
@@ -1680,10 +2192,13 @@ lets the client choose the concrete timeline.")
through Transport Layer Security (@dfn{TLS}) encrypted connections.")
(license license:lgpl2.1)))
+(define-public ocaml4.02-ssl
+ (package-with-ocaml4.02 ocaml-ssl))
+
(define-public ocaml-lwt
(package
(name "ocaml-lwt")
- (version "2.6.0")
+ (version "4.1.0")
(source
(origin
(method url-fetch)
@@ -1691,35 +2206,37 @@ through Transport Layer Security (@dfn{TLS}) encrypted connections.")
".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256 (base32
- "1gbw0g8a5a4b16diqrmlhc8ilnikrm4w3jjm1zq310maqg8z0zxz"))))
+ "0mhh019bjkg5xfvpy1pxs4xdxb759fyydmgb6l4j0qww1qgr8klp"))))
(build-system ocaml-build-system)
(arguments
- `(#:configure-flags
- (list "--enable-ssl" "--enable-glib" "--enable-react"
- "--enable-ppx")
+ `(#:tests? #f; require lwt_ppx
#:phases
(modify-phases %standard-phases
- (add-before 'configure 'disable-some-checks
- (lambda* (#:key #:allow-other-keys)
- (substitute* "tests/unix/main.ml"
- (("Test_mcast.suite;") ""))))
- (add-after 'install 'link-stubs
+ (replace 'configure
+ (lambda _
+ (invoke "ocaml" "src/util/configure.ml" "-use-libev" "true")
+ #t))
+ (replace 'build
+ (lambda _
+ (invoke "jbuilder" "build" "@install")
+ #t))
+ (replace 'install
(lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (stubs (string-append out "/lib/ocaml/site-lib/stubslibs"))
- (lib (string-append out "/lib/ocaml/site-lib/lwt")))
- (mkdir-p stubs)
- (symlink (string-append lib "/dlllwt-glib_stubs.so")
- (string-append stubs "/dlllwt-glib_stubs.so"))
- (symlink (string-append lib "/dlllwt-unix_stubs.so")
- (string-append stubs "/dlllwt-unix_stubs.so"))))))))
- (native-inputs `(("pkg-config" ,pkg-config)
- ("ppx-tools" ,ocaml-ppx-tools)))
- (inputs `(("libev" ,libev)
- ("glib" ,glib)))
- (propagated-inputs `(("result" ,ocaml-result)
- ("ocaml-ssl" ,ocaml-ssl)
- ("ocaml-react" ,ocaml-react)))
+ (invoke "jbuilder" "install" "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (native-inputs
+ `(("dune" ,dune)
+ ("ocaml-cppo" ,ocaml-cppo)
+ ("ocaml-migrate-parsetree" ,ocaml-migrate-parsetree)
+ ("pkg-config" ,pkg-config)
+ ("ppx-tools-versioned" ,ocaml-ppx-tools-versioned)))
+ (inputs
+ `(("libev" ,libev)
+ ("glib" ,glib)))
+ (propagated-inputs
+ `(("result" ,ocaml-result)
+ ("ocaml-ssl" ,ocaml-ssl)
+ ("ocaml-react" ,ocaml-react)))
(home-page "https://github.com/ocsigen/lwt")
(synopsis "Cooperative threads and I/O in monadic style")
(description "Lwt provides typed, composable cooperative threads. These
@@ -1728,6 +2245,48 @@ process. Also, in many cases, Lwt threads can interact without the need for
locks or other synchronization primitives.")
(license license:lgpl2.1)))
+(define-public ocaml4.02-lwt
+ (package-with-ocaml4.02 ocaml-lwt))
+
+(define-public ocaml-lwt-log
+ (package
+ (name "ocaml-lwt-log")
+ (version "1.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/aantron/lwt_log/archive/" version
+ ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256 (base32
+ "1lr62j2266pbsi54xmzsfvl2z7fi7smhak7fp1ybl8hssxwi6in2"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:tests? #f; require lwt_ppx
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "jbuilder" "build" "@install")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "jbuilder" "install" "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (native-inputs
+ `(("dune" ,dune)))
+ (propagated-inputs
+ `(("lwt" ,ocaml-lwt)))
+ (home-page "https://github.com/aantron/lwt_log")
+ (synopsis "Logging library")
+ (description "This package provides a deprecated logging component for
+ocaml lwt.")
+ (license license:lgpl2.1)))
+
+(define-public ocaml4.02-lwt-log
+ (package-with-ocaml4.02 ocaml-lwt-log))
+
(define-public ocaml-logs
(package
(name "ocaml-logs")
@@ -1740,18 +2299,22 @@ locks or other synchronization primitives.")
(base32
"1khbn7jqpid83zn8rvyh1x1sirls7zc878zj4fz985m5xlsfy853"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "build" "--with-js_of_ocaml" "false")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)))
- (propagated-inputs `(("fmt" ,ocaml-fmt)
- ("lwt" ,ocaml-lwt)
- ("mtime" ,ocaml-mtime)
- ("result" ,ocaml-result)
- ("cmdliner" ,ocaml-cmdliner)
- ("topkg" ,ocaml-topkg)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build" "--with-js_of_ocaml" "false")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
+ (propagated-inputs
+ `(("fmt" ,ocaml-fmt)
+ ("lwt" ,ocaml-lwt)
+ ("mtime" ,ocaml-mtime)
+ ("result" ,ocaml-result)
+ ("cmdliner" ,ocaml-cmdliner)
+ ("topkg" ,ocaml-topkg)))
(home-page "http://erratique.ch/software/logs")
(synopsis "Logging infrastructure for OCaml")
(description "Logs provides a logging infrastructure for OCaml. Logging is
@@ -1759,6 +2322,9 @@ performed on sources whose reporting level can be set independently. Log
message report is decoupled from logging and is handled by a reporter.")
(license license:isc)))
+(define-public ocaml4.02-logs
+ (package-with-ocaml4.02 ocaml-logs))
+
(define-public ocaml-fpath
(package
(name "ocaml-fpath")
@@ -1771,14 +2337,18 @@ message report is decoupled from logging and is handled by a reporter.")
(base32
"05134ij27xjl6gaqsc65yl19vfj6cjxq3mbm9bf4mija8grdpn6g"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "build")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)))
- (propagated-inputs `(("topkg" ,ocaml-topkg)
- ("astring" ,ocaml-astring)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
+ (propagated-inputs
+ `(("topkg" ,ocaml-topkg)
+ ("astring" ,ocaml-astring)))
(home-page "http://erratique.ch/software/fpath")
(synopsis "File system paths for OCaml")
(description "Fpath is an OCaml module for handling file system paths with
@@ -1786,6 +2356,9 @@ POSIX or Windows conventions. Fpath processes paths without accessing the
file system and is independent from any system library.")
(license license:isc)))
+(define-public ocaml4.02-fpath
+ (package-with-ocaml4.02 ocaml-fpath))
+
(define-public ocaml-bos
(package
(name "ocaml-bos")
@@ -1798,18 +2371,22 @@ file system and is independent from any system library.")
(base32
"1ly66lysk4w6mdy4k1n3ynlpfpq7lw4wshcpzgx58v6x613w5s7q"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "build")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)))
- (propagated-inputs `(("topkg" ,ocaml-topkg)
- ("astring" ,ocaml-astring)
- ("fmt" ,ocaml-fmt)
- ("fpath" ,ocaml-fpath)
- ("logs" ,ocaml-logs)
- ("rresult" ,ocaml-rresult)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
+ (propagated-inputs
+ `(("topkg" ,ocaml-topkg)
+ ("astring" ,ocaml-astring)
+ ("fmt" ,ocaml-fmt)
+ ("fpath" ,ocaml-fpath)
+ ("logs" ,ocaml-logs)
+ ("rresult" ,ocaml-rresult)))
(home-page "http://erratique.ch/software/bos")
(synopsis "Basic OS interaction for OCaml")
(description "Bos provides support for basic and robust interaction with
@@ -1818,26 +2395,31 @@ environment, parse command line arguments, interact with the file system and
run command line programs.")
(license license:isc)))
+(define-public ocaml4.02-bos
+ (package-with-ocaml4.02 ocaml-bos))
+
(define-public ocaml-xmlm
(package
(name "ocaml-xmlm")
- (version "1.2.0")
+ (version "1.3.0")
(source (origin
(method url-fetch)
(uri (string-append "http://erratique.ch/software/xmlm/releases/"
"xmlm-" version ".tbz"))
(sha256
(base32
- "1jywcrwn5z3gkgvicr004cxmdaqfmq8wh72f81jqz56iyn5024nh"))))
+ "1rrdxg5kh9zaqmgapy9bhdqyxbbvxxib3bdfg1vhw4rrkp1z0x8n"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (replace 'build
- (lambda* (#:key #:allow-other-keys)
- (zero? (system* "pkg/build" "true")))))))
- (native-inputs `(("opam" ,opam)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("ocaml-topkg" ,ocaml-topkg)
+ ("opam" ,opam)))
(home-page "http://erratique.ch/software/xmlm")
(synopsis "Streaming XML codec for OCaml")
(description "Xmlm is a streaming codec to decode and encode the XML data
@@ -1848,32 +2430,41 @@ representation of the data.")
(define-public ocaml4.01-xmlm
(package-with-ocaml4.01 ocaml-xmlm))
+(define-public ocaml4.02-xmlm
+ (package-with-ocaml4.02 ocaml-xmlm))
+
(define-public ocaml-ulex
(package
(name "ocaml-ulex")
- (version "1.1")
+ (version "1.2")
(source (origin
(method url-fetch)
- (uri (string-append "http://www.cduce.org/download/ulex-"
+ (uri (string-append "https://github.com/whitequark/ulex/archive/v"
version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0fjlkwps14adfgxdrbb4yg65fhyimplvjjs1xqj5np197cig67x0"))))
+ "16gnbhqs6y2v89vw4igzvxdf2g8ybh5643636824aldcv8sscac0"))))
(build-system ocaml-build-system)
- (arguments `(#:phases (modify-phases %standard-phases (delete 'configure))
- #:tests? #f
- #:make-flags
- (list "all.opt"
- (string-append "OCAMLBUILD=ocamlbuild -byte-plugin "
- "-cflags -I,"
- (assoc-ref %build-inputs "camlp4")
- "/lib/ocaml/site-lib/camlp4"))))
- (native-inputs `(("camlp4" ,camlp4)))
+ (arguments
+ `(#:phases (modify-phases %standard-phases (delete 'configure))
+ #:tests? #f
+ #:make-flags
+ (list "all.opt"
+ (string-append "OCAMLBUILD=ocamlbuild -byte-plugin "
+ "-cflags -I," (assoc-ref %build-inputs "camlp4")
+ "/lib/ocaml/site-lib/camlp4"))))
+ (native-inputs
+ `(("camlp4" ,camlp4)
+ ("ocamlbuild" ,ocamlbuild)))
(home-page "http://www.cduce.org/download.html#side")
(synopsis "Lexer generator for Unicode and OCaml")
(description "Lexer generator for Unicode and OCaml.")
(license license:expat)))
+(define-public ocaml4.02-ulex
+ (package-with-ocaml4.02 ocaml-ulex))
+
(define-public ocaml-uchar
(package
(name "ocaml-uchar")
@@ -1886,39 +2477,49 @@ representation of the data.")
(sha256 (base32
"0ficw1x7ymbd6m8hqw3w1aycwm1hbwd6bad3c5pspwnzh3qlikhi"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "native=true" "native-dynlink=true")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "native=true" "native-dynlink=true")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
(home-page "https://github.com/ocaml/uchar")
(synopsis "Compatibility library for OCaml's Uchar module")
(description "The uchar package provides a compatibility library for the
`Uchar` module introduced in OCaml 4.03.")
(license license:lgpl2.1)))
+(define-public ocaml4.02-uchar
+ (package-with-ocaml4.02 ocaml-uchar))
+
(define-public ocaml-uutf
(package
(name "ocaml-uutf")
- (version "1.0.0")
+ (version "1.0.1")
(source (origin
(method url-fetch)
(uri (string-append "http://erratique.ch/software/uutf/releases/"
"uutf-" version ".tbz"))
(sha256
(base32
- "08i0cw02cxw4mi2rs01v9xi307qshs6fnd1dlqyb52kcxzblpp37"))))
+ "1gp96dcggq7s84934vimxh89caaxa77lqiff1yywbwkilkkjcfqj"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "build")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)
- ("topkg" ,ocaml-topkg)))
- (propagated-inputs `(("uchar" ,ocaml-uchar)
- ("cmdliner" ,ocaml-cmdliner)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)
+ ("topkg" ,ocaml-topkg)))
+ (propagated-inputs
+ `(("uchar" ,ocaml-uchar)
+ ("cmdliner" ,ocaml-cmdliner)))
(home-page "http://erratique.ch/software/uutf")
(synopsis "Non-blocking streaming Unicode codec for OCaml")
(description "Uutf is a non-blocking streaming codec to decode and encode
@@ -1930,27 +2531,34 @@ Functions are also provided to fold over the characters of UTF encoded OCaml
string values and to directly encode characters in OCaml Buffer.t values.")
(license license:isc)))
+(define-public ocaml4.02-uutf
+ (package-with-ocaml4.02 ocaml-uutf))
+
(define-public ocaml-jsonm
(package
(name "ocaml-jsonm")
- (version "1.0.0")
+ (version "1.0.1")
(source (origin
(method url-fetch)
(uri (string-append "http://erratique.ch/software/jsonm/releases/"
"jsonm-" version ".tbz"))
(sha256
(base32
- "1v3ln6d965lplj28snjdqdqablpp1kx8bw2cfx0m6i157mqyln62"))))
+ "1176dcmxb11fnw49b7yysvkjh0kpzx4s48lmdn5psq9vshp5c29w"))))
(build-system ocaml-build-system)
- (arguments `(#:tests? #f
- #:build-flags (list "build")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure))))
- (native-inputs `(("opam" ,opam)
- ("topkg" ,ocaml-topkg)))
- (propagated-inputs `(("uutf" ,ocaml-uutf)
- ("cmdliner" ,ocaml-cmdliner)))
+ (arguments
+ `(#:tests? #f
+ #:build-flags (list "build")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)
+ ("topkg" ,ocaml-topkg)))
+ (propagated-inputs
+ `(("uutf" ,ocaml-uutf)
+ ("cmdliner" ,ocaml-cmdliner)))
(home-page "http://erratique.ch/software/jsonm")
(synopsis "Non-blocking streaming JSON codec for OCaml")
(description "Jsonm is a non-blocking streaming codec to decode and encode
@@ -1958,25 +2566,30 @@ the JSON data format. It can process JSON text without blocking on IO and
without a complete in-memory representation of the data.")
(license license:isc)))
+(define-public ocaml4.02-jsonm
+ (package-with-ocaml4.02 ocaml-jsonm))
+
(define-public ocaml-ocurl
(package
(name "ocaml-ocurl")
- (version "0.7.9")
+ (version "0.8.2")
(source (origin
(method url-fetch)
(uri (string-append "http://ygrek.org.ua/p/release/ocurl/ocurl-"
version ".tar.gz"))
(sha256
(base32
- "0pm6nm33wi0p9h765k6zb94ljpknryam4qd1hmb2rsk2y0y1181n"))))
+ "1ax3xdlzgb1zg7d0wr9nwgmh6a45a764m0wk8p6mx07ad94hz0q9"))))
(build-system ocaml-build-system)
- (arguments `(#:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-/bin/sh
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "configure"
- (("-/bin/sh") (string-append "-" (which "bash")))))))))
- (native-inputs `(("pkg-config" ,pkg-config)))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'fix-/bin/sh
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "configure"
+ (("-/bin/sh") (string-append "-" (which "bash")))))))))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
(inputs `(("curl" ,curl)))
(home-page "http://ocurl.forge.ocamlcore.org/")
(synopsis "OCaml bindings for libcurl")
@@ -1984,6 +2597,9 @@ without a complete in-memory representation of the data.")
multitude of other network protocols (FTP/SMTP/RTSP/etc).")
(license license:isc)))
+(define-public ocaml4.02-ocurl
+ (package-with-ocaml4.02 ocaml-ocurl))
+
(define-public ocaml-base64
(package
(name "ocaml-base64")
@@ -2005,6 +2621,7 @@ multitude of other network protocols (FTP/SMTP/RTSP/etc).")
(delete 'configure))))
(native-inputs
`(("topkg" ,ocaml-topkg)
+ ("ocamlbuild" ,ocamlbuild)
("opam" ,opam)
("rresult" ,ocaml-rresult)
("bos" ,ocaml-bos)
@@ -2016,6 +2633,9 @@ that represent binary data in an ASCII string format by translating it into a
radix-64 representation. It is specified in RFC 4648.")
(license license:isc)))
+(define-public ocaml4.02-base64
+ (package-with-ocaml4.02 ocaml-base64))
+
(define-public ocamlify
(package
(name "ocamlify")
@@ -2029,7 +2649,9 @@ radix-64 representation. It is specified in RFC 4648.")
(build-system ocaml-build-system)
; tests are done during build
(arguments
- `(#:phases
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:phases
(modify-phases %standard-phases
(delete 'check))))
(home-page "https://forge.ocamlcore.org/projects/ocamlify")
@@ -2043,14 +2665,14 @@ OCaml code.")
(define-public omake
(package
(name "omake")
- (version "0.10.1")
+ (version "0.10.3")
(source (origin
(method url-fetch)
(uri (string-append "http://download.camlcity.org/download/"
"omake-" version ".tar.gz"))
(sha256
(base32
- "093ansbppms90hiqvzar2a46fj8gm9iwnf8gn38s6piyp70lrbsj"))
+ "07bdg1h5i7qnlv9xq81ad5hfypl10hxm771h4rjyl5cn8plhfcgz"))
(patches (search-patches "omake-fix-non-determinism.patch"))))
(build-system ocaml-build-system)
(arguments
@@ -2063,6 +2685,8 @@ OCaml code.")
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "mk/osconfig_unix.mk"
(("CC = cc") "CC = gcc")))))))
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-omake))))
(native-inputs `(("hevea" ,hevea)))
(home-page "http://projects.camlcity.org/projects/omake.html")
(synopsis "Build system designed for scalability and portability")
@@ -2084,28 +2708,66 @@ many additional enhancements, including:
license:gpl2)))) ; OMake itself, with ocaml linking exception
; see LICENSE.OMake
+(define-public ocaml4.02-omake
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant omake))))
+ (package
+ (inherit base)
+ (version "0.10.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://download.camlcity.org/download/"
+ "omake-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1znnlkpz89hk44byvnl1pr92ym6hwfyyw2qm9clq446r6l2z4m64"))
+ (patches (search-patches "omake-fix-non-determinism.patch")))))))
+
(define-public ocaml-batteries
(package
(name "ocaml-batteries")
- (version "2.5.3")
+ (version "2.9.0")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri "batteries" version 1650))
+ (uri (string-append "https://github.com/ocaml-batteries-team/"
+ "batteries-included/releases/download/v"
+ version "/batteries-" version ".tar.gz"))
(sha256
(base32
- "1a97w3x2l1jr5x9kj5gqm1x6b0q9fjqdcsvls7arnl3bvzgsia0n"))))
+ "0lkdmv2my5hirkswmci2cch341n6wkkj2q8apjhs83sg6528caxi"))))
(build-system ocaml-build-system)
(native-inputs
- `(("qtest" ,ocaml-qtest)
+ `(("ocamlbuild" ,ocamlbuild)
+ ("qtest" ,ocaml-qtest)
("bisect" ,ocaml-bisect)
("ounit" ,ocaml-ounit)))
+ (propagated-inputs
+ `(("ocaml-num" ,ocaml-num)))
(arguments
`(#:phases
(modify-phases %standard-phases
(delete 'check) ; tests are run by the build phase
(replace 'build
- (lambda* (#:key outputs #:allow-other-keys)
- (zero? (system* "ocaml" "setup.ml" "-build")))))))
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((files
+ (map (lambda (str)
+ (substring str 0 (- (string-length str) 1)))
+ (append
+ (find-files "src" ".*.mliv")
+ (find-files "src" ".*.mlv")
+ (find-files "src" ".*.mlp")))))
+ (apply invoke "ocamlbuild" "-no-links" "-use-ocamlfind" "-I" "num"
+ "-lflag" "-dllpath-all" files)
+ (for-each (lambda (file)
+ (copy-file (string-append "_build/" file) file))
+ files))
+ (invoke "ocamlbuild" "-no-links" "-use-ocamlfind" "-I" "num"
+ "-lflag" "-dllpath-all" "build/mkconf.byte")
+ (copy-file "_build/build/mkconf.byte" "build/mkconf.byte")
+ (invoke "make" "all")
+ #t)))))
+ (properties
+ `((ocaml4.01-variant . ,(delay ocaml4.01-batteries))
+ (ocaml4.02-variant . ,(delay ocaml4.02-batteries))))
(home-page "http://batteries.forge.ocamlcore.org/")
(synopsis "Development platform for the OCaml programming language")
(description "Define a standard set of libraries which may be expected on
@@ -2113,8 +2775,24 @@ every compliant installation of OCaml and organize these libraries into a
hierarchy of modules.")
(license license:lgpl2.1+)))
+(define-public ocaml4.02-batteries
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant ocaml-batteries))))
+ (package
+ (inherit base)
+ (version "2.5.3")
+ (source (origin
+ (method url-fetch)
+ (uri (ocaml-forge-uri "batteries" version 1650))
+ (sha256
+ (base32
+ "1a97w3x2l1jr5x9kj5gqm1x6b0q9fjqdcsvls7arnl3bvzgsia0n"))))
+ (propagated-inputs '()))))
+
(define-public ocaml4.01-batteries
- (package-with-ocaml4.01 ocaml-batteries))
+ (let ((base (package-with-ocaml4.01 (strip-ocaml4.01-variant ocaml4.02-batteries))))
+ (package
+ (inherit base)
+ (name "ocaml4.01-batteries"))))
(define-public ocaml-pcre
(package
@@ -2139,9 +2817,11 @@ hierarchy of modules.")
(lib (string-append out "/lib/ocaml/site-lib/pcre")))
(mkdir-p stubs)
(symlink (string-append lib "/dllpcre_stubs.so")
- (string-append stubs "/dllpcre_stubs.so"))))))))
+ (string-append stubs "/dllpcre_stubs.so")))
+ #t)))))
(native-inputs
`(("batteries" ,ocaml-batteries)
+ ("ocamlbuild" ,ocamlbuild)
("pcre:bin" ,pcre "bin")))
(propagated-inputs `(("pcre" ,pcre)))
(home-page "https://mmottl.github.io/pcre-ocaml")
@@ -2151,19 +2831,26 @@ matching and substitution, similar to the functionality offered by the Perl
language.")
(license license:lgpl2.1+))); with the OCaml link exception
+(define-public ocaml4.02-pcre
+ (package-with-ocaml4.02 ocaml-pcre))
+
(define-public ocaml-expect
(package
(name "ocaml-expect")
- (version "0.0.5")
+ (version "0.0.6")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri name version 1372))
+ (uri (ocaml-forge-uri name version 1736))
(sha256
(base32
- "07xq8w2x2vffc32z7vk6y14jwbfb1cw0m2lm1jzi60hnr1dvg8by"))))
+ "098qvg9d4yrqzr5ax291y3whrpax0m3sx4gi6is0mblc96r9yqk0"))))
+ (arguments
+ `(#:tests? #f))
(build-system ocaml-build-system)
(native-inputs
- `(("ocaml-pcre" ,ocaml-pcre)
+ `(("ocamlbuild" ,ocamlbuild)
+ ("ocaml-num" ,ocaml-num)
+ ("ocaml-pcre" ,ocaml-pcre)
("ounit" ,ocaml-ounit)))
(propagated-inputs `(("batteries" ,ocaml-batteries)))
(home-page "https://forge.ocamlcore.org/projects/ocaml-expect/")
@@ -2172,18 +2859,22 @@ language.")
can match the question using a regular expression or a timeout.")
(license license:lgpl2.1+))) ; with the OCaml static compilation exception
-(define-public ocaml-fileutils
+(define-public ocaml4.02-fileutils
(package
- (name "ocaml-fileutils")
- (version "0.5.1")
+ (name "ocaml4.02-fileutils")
+ (version "0.5.3")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri name version 1651))
+ (uri (ocaml-forge-uri name version 1728))
(sha256
(base32
- "0g6zx2rcvacklxyli19ixcf6ich9ipxsps4k3jz98f5zlaab0a7g"))))
+ "1rc4cqlvdhbs55i85zfbfhz938fsy4fj6kwlkfm3ra7bpwn8bmpd"))))
(build-system ocaml-build-system)
- (native-inputs `(("ounit" ,ocaml-ounit)))
+ (arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib))
+ (native-inputs
+ `(("ounit" ,ocaml4.02-ounit)))
(home-page "http://ocaml-fileutils.forge.ocamlcore.org")
(synopsis "Pure OCaml functions to manipulate real file and filename")
(description "Library to provide pure OCaml functions to manipulate real
@@ -2193,20 +2884,20 @@ file (POSIX like) and filename.")
(define-public ocaml-oasis
(package
(name "ocaml-oasis")
- (version "0.4.8")
+ (version "0.4.11")
(source (origin
(method url-fetch)
- (uri (ocaml-forge-uri name version 1669))
+ (uri (ocaml-forge-uri name version 1757))
(sha256
(base32
- "1ln7vc7ip6s5xbi20mhnn087xi4a2m5vqawx0703qqnfkzhmslqy"))
+ "0bn13mzfa98dq3y0jwzzndl55mnywaxv693z6f1rlvpdykp3vdqq"))
(modules '((guix build utils)))
(snippet
'(begin
(substitute* "test/test-main/Test.ml"
;; most of these tests fail because ld cannot find crti.o, but according
;; to the log file, the environment variables {LD_,}LIBRARY_PATH
- ;; are set correctly whene LD_LIBRARY_PATH is defined beforhand.
+ ;; are set correctly when LD_LIBRARY_PATH is defined beforhand.
(("TestBaseCompat.tests;") "")
(("TestExamples.tests;") "")
(("TestFull.tests;") "")
@@ -2216,17 +2907,12 @@ file (POSIX like) and filename.")
(("TestPluginOMake.tests;") ""))
#t))))
(build-system ocaml-build-system)
+ (arguments
+ `(#:tests? #f))
(native-inputs
- `(("ocamlify" ,ocamlify)
- ("ocamlmod" ,ocamlmod)
- ("ounit" ,ocaml-ounit)
- ("omake" ,omake)
- ("ocaml-expect" ,ocaml-expect)
- ("ocaml-pcre" ,ocaml-pcre)
- ("ocaml-fileutils" ,ocaml-fileutils)
- ("camlp4" ,camlp4)
- ("texlive" ,texlive)
- ("pkg-config" ,pkg-config)))
+ `(("ocamlbuild" ,ocamlbuild)
+ ("ocamlify" ,ocamlify)
+ ("ocamlmod" ,ocamlmod)))
(home-page "https://oasis.forge.ocamlcore.org")
(synopsis "Integrates a configure, build, install system in OCaml projects")
(description "OASIS is a tool to integrate a configure, build and install
@@ -2234,6 +2920,9 @@ system in your OCaml projects. It helps to create standard entry points in your
build system and allows external tools to analyse your project easily.")
(license license:lgpl2.1+))) ; with ocaml static compilation exception
+(define-public ocaml4.02-oasis
+ (package-with-ocaml4.02 ocaml-oasis))
+
(define-public ocaml-js-build-tools
(package
(name "ocaml-js-build-tools")
@@ -2242,6 +2931,7 @@ build system and allows external tools to analyse your project easily.")
"0r8z4fz8iy5y6hkdlkpwf6rk4qigcr3dzyv35585xgg2ahf12zy6"))
(native-inputs
`(("oasis" ,ocaml-oasis)
+ ("ocamlbuild" ,ocamlbuild)
("opam" ,opam)))
(build-system ocaml-build-system)
(arguments janestreet-arguments)
@@ -2256,17 +2946,23 @@ from the oasis build log
@end enumerate")
(license license:asl2.0)))
-(define-public ocaml-bin-prot
+(define-public ocaml4.02-js-build-tools
+ (package-with-ocaml4.02 ocaml-js-build-tools))
+
+(define-public ocaml4.02-bin-prot
(package
- (name "ocaml-bin-prot")
+ (name "ocaml4.02-bin-prot")
(version "113.33.03")
(source (janestreet-origin "bin_prot" version
"1ws8c017z8nbj3vw92ndvjk9011f71rmp3llncbv8r5fc76wqv3l"))
+ (build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
- (build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/bin_prot/")
(synopsis "Binary protocol generator")
(description "This library contains functionality for reading and writing
@@ -2277,17 +2973,20 @@ protocol is also heavily optimized for size, making it ideal for long-term
storage of large amounts of data.")
(license license:asl2.0)))
-(define-public ocaml-fieldslib
+(define-public ocaml4.02-fieldslib
(package
- (name "ocaml-fieldslib")
+ (name "ocaml4.02-fieldslib")
(version "113.33.03")
(source (janestreet-origin "fieldslib" version
"1rm3bn54bzk2hlq8f3w067ak8s772w4a8f78i3yh79vxfzq8ncvv"))
+ (build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
- (build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/fieldslib/")
(synopsis "Syntax extension to record fields")
(description "Syntax extension to define first class values representing
@@ -2295,18 +2994,21 @@ record fields, to get and set record fields, iterate and fold over all fields
of a record and create new record values.")
(license license:asl2.0)))
-(define-public ocaml-ppx-core
+(define-public ocaml4.02-ppx-core
(package
- (name "ocaml-ppx-core")
+ (name "ocaml4.02-ppx-core")
(version "113.33.03")
(source (janestreet-origin "ppx_core" version
"0f69l4czhgssnhb5ds2j9dbqjyz8dp1y3i3x0i4h6pxnms20zbxa"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
- (inputs `(("ppx-tools" ,ocaml-ppx-tools)))
- (arguments janestreet-arguments)
+ (inputs `(("ppx-tools" ,ocaml4.02-ppx-tools)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_core/")
(synopsis "Standard library for ppx rewriters")
(description "Ppx_core is a standard library for OCaml AST transformers.
@@ -2319,20 +3021,23 @@ It contains:
@end enumerate")
(license license:asl2.0)))
-(define-public ocaml-ppx-optcomp
+(define-public ocaml4.02-ppx-optcomp
(package
- (name "ocaml-ppx-optcomp")
+ (name "ocaml4.02-ppx-optcomp")
(version "113.33.03")
(source (janestreet-origin "ppx_optcomp" version
"13an8p2r7sd0d5lv54mlzrxdni47408bwqi3bjcx4m6005170q30"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_optcomp/")
(synopsis "Optional compilation for OCaml")
(description "Ppx_optcomp stands for Optional Compilation. It is a tool
@@ -2340,21 +3045,24 @@ used to handle optional compilations of pieces of code depending of the word
size, the version of the compiler, ...")
(license license:asl2.0)))
-(define-public ocaml-ppx-driver
+(define-public ocaml4.02-ppx-driver
(package
- (name "ocaml-ppx-driver")
+ (name "ocaml4.02-ppx-driver")
(version "113.33.03")
(source (janestreet-origin "ppx_driver" version
"011zzr45897j49b7iiybb29k7pspcx36mlnp7nh6pxb8b0ga76fh"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)
- ("ppx-optcomp" ,ocaml-ppx-optcomp)))
+ ("ppx-optcomp" ,ocaml4.02-ppx-optcomp)))
(propagated-inputs
- `(("ppx-optcomp" ,ocaml-ppx-optcomp)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-optcomp" ,ocaml4.02-ppx-optcomp)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_driver/")
(synopsis "Feature-full driver for OCaml AST transformers")
(description "A driver is an executable created from a set of OCaml AST
@@ -2372,21 +3080,33 @@ provide a tool that can be used to:
(define-public ocaml-cppo
(package
(name "ocaml-cppo")
- (version "1.4.1")
+ (version "1.6.5")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/mjambon/cppo/archive/v" version
".tar.gz"))
(sha256 (base32
- "02gma6nw09vfnd6h7bl3n70lwz7m9z2svplxyfh6h5bf4lqgqzjv"))
+ "1dkm3d5h6h56y937gcdk2wixlpzl59vv5pmiafglr89p20kf7gqf"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(arguments
- `(#:phases (modify-phases %standard-phases (delete 'configure))
- #:make-flags (list (string-append "BINDIR="
- (assoc-ref %outputs "out") "/bin"))
+ `(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "dune" "build" "@install" "--profile" "release")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))
#:tests? #f))
+ (native-inputs
+ `(("dune" ,dune)
+ ("ocamlbuild" ,ocamlbuild)))
(home-page "https://github.com/mjambon/cppo")
(synopsis "Equivalent of the C preprocessor for OCaml programs")
(description "Cppo is an equivalent of the C preprocessor for OCaml
@@ -2399,11 +3119,14 @@ programs. It allows the definition of simple macros and file inclusion. Cpp oi
@end enumerate")
(license license:bsd-3)))
+(define-public ocaml4.02-cppo
+ (package-with-ocaml4.02 ocaml-cppo))
+
;; this package is not reproducible. This is related to temporary filenames
;; such as findlib_initxxxxx where xxxxx is random.
-(define-public ocaml-ppx-deriving
+(define-public ocaml4.02-ppx-deriving
(package
- (name "ocaml-ppx-deriving")
+ (name "ocaml4.02-ppx-deriving")
(version "4.1")
(source
(origin
@@ -2415,15 +3138,17 @@ programs. It allows the definition of simple macros and file inclusion. Cpp oi
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
- ("cppo" ,ocaml-cppo)
- ("ounit" ,ocaml-ounit)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("cppo" ,ocaml4.02-cppo)
+ ("ounit" ,ocaml4.02-ounit)
("opam" ,opam)))
(propagated-inputs
- `(("result" ,ocaml-result)
- ("ppx-tools" ,ocaml-ppx-tools)))
+ `(("result" ,ocaml4.02-result)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)))
(arguments
- `(#:phases
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:phases
(modify-phases %standard-phases
(delete 'configure)
(add-before 'install 'fix-environment
@@ -2438,90 +3163,100 @@ programs. It allows the definition of simple macros and file inclusion. Cpp oi
code based on type definitions, and a set of useful plugins for common tasks.")
(license license:expat)))
-(define-public ocaml-ppx-type-conv
+(define-public ocaml4.02-ppx-type-conv
(package
- (name "ocaml-ppx-type-conv")
+ (name "ocaml4.02-ppx-type-conv")
(version "113.33.03")
(source
(janestreet-origin "ppx_type_conv" version
"1sp602ads2f250nv4d4rgw54d14k7flyhb4w8ff084f657hhmxv2"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-deriving" ,ocaml-ppx-deriving)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("result" ,ocaml-result)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-driver" ,ocaml-ppx-driver)))
- (arguments janestreet-arguments)
+ `(("ppx-deriving" ,ocaml4.02-ppx-deriving)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-driver" ,ocaml4.02-ppx-driver)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_type_conv/")
(synopsis "Support Library for type-driven code generators")
(description "The type_conv library factors out functionality needed by
different preprocessors that generate code from type specifications.")
(license license:asl2.0)))
-(define-public ocaml-ppx-inline-test
+(define-public ocaml4.02-ppx-inline-test
(package
- (name "ocaml-ppx-inline-test")
+ (name "ocaml4.02-ppx-inline-test")
(version "113.33.03")
(source (janestreet-origin "ppx_inline_test" version
"0859ni43fl39dd5g6cxfhq0prxmx59bd2bfq8jafp593ba4q0icq"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)
- ("ppx-core" ,ocaml-ppx-core)))
+ ("ppx-core" ,ocaml4.02-ppx-core)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_inline_test/")
(synopsis "Syntax extension for writing in-line tests in ocaml code")
(description "Syntax extension for writing in-line tests in ocaml code.")
(license license:asl2.0)))
-(define-public ocaml-ppx-bench
+(define-public ocaml4.02-ppx-bench
(package
- (name "ocaml-ppx-bench")
+ (name "ocaml4.02-ppx-bench")
(version "113.33.03")
(source (janestreet-origin "ppx_bench" version
"1hky3y17qpb925rymf97wv54di9gaqdmkix7wpkjw14qzl512b68"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)
- ("ppx-core" ,ocaml-ppx-core)))
+ ("ppx-core" ,ocaml4.02-ppx-core)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-inline-test" ,ocaml-ppx-inline-test)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-inline-test" ,ocaml4.02-ppx-inline-test)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_bench/")
(synopsis "Syntax extension for writing in-line benchmarks in ocaml code")
(description "Syntax extension for writing in-line benchmarks in ocaml code.")
(license license:asl2.0)))
-(define-public ocaml-ppx-compare
+(define-public ocaml4.02-ppx-compare
(package
- (name "ocaml-ppx-compare")
+ (name "ocaml4.02-ppx-compare")
(version "113.33.03")
(source (janestreet-origin "ppx_compare" version
"0bfhi33kq9l4q6zzc6svki2csracz5j4731c3npcy6cs73jynn0z"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)
- ("ppx-core" ,ocaml-ppx-core)))
+ ("ppx-core" ,ocaml4.02-ppx-core)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_compare/")
(synopsis "Generation of comparison functions from types")
(description "Generation of fast comparison functions from type expressions
@@ -2532,94 +3267,109 @@ flexibility by allowing you to override them for a specific type and more safety
by making sure that you only compare comparable values.")
(license license:asl2.0)))
-(define-public ocaml-sexplib
+(define-public ocaml4.02-sexplib
(package
- (name "ocaml-sexplib")
+ (name "ocaml4.02-sexplib")
(version "113.33.03")
(source (janestreet-origin "sexplib" version
"1ffjmj8if9lyv965cgn2ld1xv7g52qsr8mqflbm515ck1i8l2ima"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/sexplib/")
(synopsis "Library for serializing OCaml values to and from S-expressions")
(description "Sexplib contains functionality for parsing and pretty-printing
s-expressions.")
(license license:asl2.0)))
-(define-public ocaml-typerep
+(define-public ocaml4.02-typerep
(package
- (name "ocaml-typerep")
+ (name "ocaml4.02-typerep")
(version "113.33.03")
(source (janestreet-origin "typerep" version
"1b9v5bmi824a9d4sx0f40ixq0yfcbiqxafg4a1jx95xg9199zafy"))
+ (build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
- (build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/typerep/")
(synopsis "Typerep is a library for runtime types")
(description "Typerep is a library for runtime types.")
(license license:asl2.0)))
-(define-public ocaml-variantslib
+(define-public ocaml4.02-variantslib
(package
- (name "ocaml-variantslib")
+ (name "ocaml4.02-variantslib")
(version "113.33.03")
(source (janestreet-origin "variantslib" version
"05vp799vl38fvl98ga5miwbzh09cnnpapi6q6gdvwyqi6w7s919n"))
+ (build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
- (build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/variantslib")
(synopsis "OCaml variants as first class values")
(description "OCaml variants as first class values.")
(license license:asl2.0)))
-(define-public ocaml-ppx-sexp-conv
+(define-public ocaml4.02-ppx-sexp-conv
(package
- (name "ocaml-ppx-sexp-conv")
+ (name "ocaml4.02-ppx-sexp-conv")
(version "113.33.03")
(source (janestreet-origin "ppx_sexp_conv" version
"1rbj6d5dl625gdxih34xcrdvikci6h8i2dl9x3wraa4qrgishiw7"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)
- ("ppx-core" ,ocaml-ppx-core)))
+ ("ppx-core" ,ocaml4.02-ppx-core)))
(propagated-inputs
- `(("sexplib" ,ocaml-sexplib)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)
- ("ppx-tools" ,ocaml-ppx-tools)))
- (arguments janestreet-arguments)
+ `(("sexplib" ,ocaml4.02-sexplib)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_sexp_conv")
(synopsis "Generation of S-expression conversion functions from type definitions")
(description "Generation of S-expression conversion functions from type
definitions.")
(license license:asl2.0)))
-(define-public ocaml-ppx-variants-conv
+(define-public ocaml4.02-ppx-variants-conv
(package
- (name "ocaml-ppx-variants-conv")
+ (name "ocaml4.02-ppx-variants-conv")
(version "113.33.03")
(source (janestreet-origin "ppx_variants_conv" version
"0vnn2l1118cj72413d3f7frlw6yc09l8f64jlzkzbgb9bxpalx34"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-core" ,ocaml-ppx-core)
- ("variantslib" ,ocaml-variantslib)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)))
- (arguments janestreet-arguments)
+ `(("ppx-core" ,ocaml4.02-ppx-core)
+ ("variantslib" ,ocaml4.02-variantslib)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_variants_conv")
(synopsis "Generation of accessor and iteration functions for ocaml variant
types")
@@ -2627,65 +3377,74 @@ types")
variant types.")
(license license:asl2.0)))
-(define-public ocaml-ppx-here
+(define-public ocaml4.02-ppx-here
(package
- (name "ocaml-ppx-here")
+ (name "ocaml4.02-ppx-here")
(version "113.33.03")
(source (janestreet-origin "ppx_here" version
"1ay8lfxi0qg3ib2zkwh4h0vqk3gjmxaz572gzab0bbxyqn3z86v7"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_here")
(synopsis "Expands [%here] into its location")
(description "Expands [%here] into its location.")
(license license:asl2.0)))
-(define-public ocaml-ppx-assert
+(define-public ocaml4.02-ppx-assert
(package
- (name "ocaml-ppx-assert")
+ (name "ocaml4.02-ppx-assert")
(version "113.33.03")
(source (janestreet-origin "ppx_assert" version
"1k5kxmqkibp5fk25pgz81f3c1r4mgvb5byzf6bnmxd24y60wn46p"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-compare" ,ocaml-ppx-compare)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)
- ("ppx-sexplib" ,ocaml-sexplib)
- ("ppx-here" ,ocaml-ppx-here)))
- (arguments janestreet-arguments)
+ `(("ppx-compare" ,ocaml4.02-ppx-compare)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)
+ ("ppx-sexplib" ,ocaml4.02-sexplib)
+ ("ppx-here" ,ocaml4.02-ppx-here)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_assert")
(synopsis "Assert-like extension nodes that raise useful errors on failure")
(description "Assert-like extension nodes that raise useful errors on failure.")
(license license:asl2.0)))
-(define-public ocaml-ppx-enumerate
+(define-public ocaml4.02-ppx-enumerate
(package
- (name "ocaml-ppx-enumerate")
+ (name "ocaml4.02-ppx-enumerate")
(version "113.33.03")
(source (janestreet-origin "ppx_enumerate" version
"15g7yfv9wg2h9r6k6q1zrhygmsl4xrfn25mrb0i4czjjivzmxjh4"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_enumerate")
(synopsis "Generate a list containing all values of a finite type")
(description "Ppx_enumerate is a ppx rewriter which generates a definition
@@ -2693,174 +3452,198 @@ for the list of all values of a type (for a type which only has finitely
many values).")
(license license:asl2.0)))
-(define-public ocaml-ppx-let
+(define-public ocaml4.02-ppx-let
(package
- (name "ocaml-ppx-let")
+ (name "ocaml4.02-ppx-let")
(version "113.33.03")
(source (janestreet-origin "ppx_let" version
"0gd6d3gdaqfwjcs7gaw1qxc30i584q6a86ndaj1bx1q63xqd6yx9"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_let")
(synopsis "Monadic let-bindings")
(description "A ppx rewriter for monadic and applicative let bindings,
match expressions, and if expressions.")
(license license:asl2.0)))
-(define-public ocaml-ppx-typerep-conv
+(define-public ocaml4.02-ppx-typerep-conv
(package
- (name "ocaml-ppx-typerep-conv")
+ (name "ocaml4.02-ppx-typerep-conv")
(version "113.33.03")
(source (janestreet-origin "ppx_typerep_conv" version
"0g0xqm9s1b2jjvxb8yp69281q2s3bwz6sibn10fvgcdawpa0rmrg"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)
- ("ppx-core" ,ocaml-ppx-core)
- ("typerep" ,ocaml-typerep)))
- (arguments janestreet-arguments)
+ `(("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("typerep" ,ocaml4.02-typerep)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_typerep_conv")
(synopsis "Generation of runtime types from type declarations")
(description "Automatic generation of runtime types from type definitions.")
(license license:asl2.0)))
-(define-public ocaml-ppx-sexp-value
+(define-public ocaml4.02-ppx-sexp-value
(package
- (name "ocaml-ppx-sexp-value")
+ (name "ocaml4.02-ppx-sexp-value")
(version "113.33.03")
(source (janestreet-origin "ppx_sexp_value" version
"0m3ag23mbqm0i2pv1dzilfks15ipa5q60mf57a0cd3p0pvarq10g"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-here" ,ocaml-ppx-here)
- ("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-here" ,ocaml4.02-ppx-here)
+ ("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_sexp_value/")
(synopsis "Simplify building s-expressions from ocaml values")
(description "A ppx rewriter that simplifies building s-expressions from
ocaml values.")
(license license:asl2.0)))
-(define-public ocaml-ppx-pipebang
+(define-public ocaml4.02-ppx-pipebang
(package
- (name "ocaml-ppx-pipebang")
+ (name "ocaml4.02-ppx-pipebang")
(version "113.33.03")
(source (janestreet-origin "ppx_pipebang" version
"1965c7hymp26ncmjs0pfxi2s5jlj60z2c9b194lgcwxqiav56pcw"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_pipebang/")
(synopsis "Inline reverse application operators `|>` and `|!`")
(description "A ppx rewriter that inlines reverse application operators
@code{|>} and @code{|!}.")
(license license:asl2.0)))
-(define-public ocaml-ppx-bin-prot
+(define-public ocaml4.02-ppx-bin-prot
(package
- (name "ocaml-ppx-bin-prot")
+ (name "ocaml4.02-ppx-bin-prot")
(version "113.33.03")
(source (janestreet-origin "ppx_bin_prot" version
"173kjv36giik11zgfvsbzwfbpr66dm2pcha9vf990jgzh8hqz39h"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("bin-prot" ,ocaml-bin-prot)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("bin-prot" ,ocaml4.02-bin-prot)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_bin_prot/")
(synopsis "Generation of bin_prot readers and writers from types")
(description "Generation of binary serialization and deserialization
functions from type definitions.")
(license license:asl2.0)))
-(define-public ocaml-ppx-fail
+(define-public ocaml4.02-ppx-fail
(package
- (name "ocaml-ppx-fail")
+ (name "ocaml4.02-ppx-fail")
(version "113.33.03")
(source (janestreet-origin "ppx_fail" version
"1dwgad0f05gqp5rnwf9dcasidpfi7q3mrpazsw3a2vijjblbhjgn"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-here" ,ocaml-ppx-here)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-here" ,ocaml4.02-ppx-here)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_fail/")
(synopsis "Add location to calls to failwiths")
(description "Syntax extension that makes [failwiths] always include a
position.")
(license license:asl2.0)))
-(define-public ocaml-ppx-custom-printf
+(define-public ocaml4.02-ppx-custom-printf
(package
- (name "ocaml-ppx-custom-printf")
+ (name "ocaml4.02-ppx-custom-printf")
(version "113.33.03")
(source (janestreet-origin "ppx_custom_printf" version
"11jlx0n87g2j1vyyp343dibx7lvvwig5j5q0nq0b80kbsq0k6yr8"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-driver" ,ocaml-ppx-driver)))
- (arguments janestreet-arguments)
+ `(("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-driver" ,ocaml4.02-ppx-driver)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_custom_printf/")
(synopsis "Printf-style format-strings for user-defined string conversion")
(description "Extensions to printf-style format-strings for user-defined
string conversion.")
(license license:asl2.0)))
-(define-public ocaml-ppx-sexp-message
+(define-public ocaml4.02-ppx-sexp-message
(package
- (name "ocaml-ppx-sexp-message")
+ (name "ocaml4.02-ppx-sexp-message")
(version "113.33.03")
(source (janestreet-origin "ppx_sexp_message" version
"084w1l3gnyw4ri9vbn7bv9b2xkw1520qczfxpxdarfivdrz8xr68"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-here" ,ocaml-ppx-here)
- ("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)))
- (arguments janestreet-arguments)
+ `(("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-here" ,ocaml4.02-ppx-here)
+ ("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_sexp_message/")
(synopsis "A ppx rewriter for easy construction of s-expressions")
(description "Ppx_sexp_message aims to ease the creation of s-expressions
@@ -2869,23 +3652,26 @@ where one needs to construct a s-expression based on various element of the
context such as function arguments.")
(license license:asl2.0)))
-(define-public ocaml-ppx-fields-conv
+(define-public ocaml4.02-ppx-fields-conv
(package
- (name "ocaml-ppx-fields-conv")
+ (name "ocaml4.02-ppx-fields-conv")
(version "113.33.03")
(source (janestreet-origin "ppx_fields_conv" version
"1vzbdz27g5qhhfs7wx6rjf979q4xyssxqbmp6sc1sxknbghslbdv"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)
- ("ppx-core" ,ocaml-ppx-core)))
+ ("ppx-core" ,ocaml4.02-ppx-core)))
(propagated-inputs
- `(("fieldslib" ,ocaml-fieldslib)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-type-conv" ,ocaml-ppx-type-conv)))
- (arguments janestreet-arguments)
+ `(("fieldslib" ,ocaml4.02-fieldslib)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-type-conv" ,ocaml4.02-ppx-type-conv)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_fields_conv/")
(synopsis "Generation of accessor and iteration functions for ocaml records")
(description "Ppx_fields_conv is a ppx rewriter that can be used to define
@@ -2894,10 +3680,59 @@ and set record fields, iterate and fold over all fields of a record and create
new record values.")
(license license:asl2.0)))
+(define-public ocaml-seq
+ (package
+ (name "ocaml-seq")
+ (version "0.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/c-cube/seq/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "02lb2d9i12bxrz2ba5wygk2bycan316skqlyri0597q7j9210g8r"))))
+ (build-system ocaml-build-system)
+ (arguments
+ `(#:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((install-dir (string-append (assoc-ref outputs "out")
+ "/lib/ocaml/site-lib/seq")))
+ (mkdir-p install-dir)
+ (with-output-to-file (string-append install-dir "/META")
+ (lambda _
+ (display "name=\"seq\"
+version=\"[distributed with ocaml]\"
+description=\"dummy package for compatibility\"
+requires=\"\"")))
+ #t))))))
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-seq))))
+ (home-page "https://github.com/c-cube/seq")
+ (synopsis "OCaml's standard iterator type")
+ (description "This package is a compatibility package for OCaml's
+standard iterator type starting from 4.07.")
+ (license license:lgpl2.1+)))
+
+(define-public ocaml4.02-seq
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant ocaml-seq))))
+ (package
+ (inherit base)
+ (arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:tests? #f; no tests
+ #:phases (modify-phases %standard-phases (delete 'configure)))))))
+
(define-public ocaml-re
(package
(name "ocaml-re")
- (version "1.7.1")
+ (version "1.8.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/ocaml/ocaml-re//archive/"
@@ -2905,9 +3740,27 @@ new record values.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1s3rcr76cgm4p1xmaazc58arkg2lz3zfcp1icm00m6s5ccnkh67b"))))
+ "1pdb0mr6z5ax6szblr3f5lbdnqq9grm97cmsfjmdma60yrx2rqhd"))))
(build-system ocaml-build-system)
- (native-inputs `(("ounit" ,ocaml-ounit)))
+ (arguments
+ `(#:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'build
+ (lambda _
+ (invoke "dune" "build" "@install" "--profile" "release")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))))
+ (propagated-inputs
+ `(("ocaml-seq" ,ocaml-seq)))
+ (native-inputs
+ `(("dune" ,dune)
+ ("ounit" ,ocaml-ounit)))
(home-page "https://github.com/ocaml/ocaml-re/")
(synopsis "Regular expression library for OCaml")
(description "Pure OCaml regular expressions with:
@@ -2920,32 +3773,38 @@ new record values.")
@end enumerate")
(license license:expat)))
-(define-public ocaml-ppx-expect
+(define-public ocaml4.02-re
+ (package-with-ocaml4.02 ocaml-re))
+
+(define-public ocaml4.02-ppx-expect
(package
- (name "ocaml-ppx-expect")
+ (name "ocaml4.02-ppx-expect")
(version "113.33.03")
(source (janestreet-origin "ppx_expect" version
"03sbs4s5i8l9syr45v25f5hzy7msd2b47k2a9wsq9m43d4imgkrc"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("fieldslib" ,ocaml-fieldslib)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("ppx-assert" ,ocaml-ppx-assert)
- ("ppx-compare" ,ocaml-ppx-compare)
- ("ppx-core" ,ocaml-ppx-core)
- ("ppx-custom-printf" ,ocaml-ppx-custom-printf)
- ("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-fields-conv" ,ocaml-ppx-fields-conv)
- ("ppx-inline-test" ,ocaml-ppx-inline-test)
- ("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("ppx-variants-conv" ,ocaml-ppx-variants-conv)
- ("re" ,ocaml-re)
- ("sexplib" ,ocaml-sexplib)
- ("variantslib" ,ocaml-variantslib)))
- (arguments janestreet-arguments)
+ `(("fieldslib" ,ocaml4.02-fieldslib)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("ppx-assert" ,ocaml4.02-ppx-assert)
+ ("ppx-compare" ,ocaml4.02-ppx-compare)
+ ("ppx-core" ,ocaml4.02-ppx-core)
+ ("ppx-custom-printf" ,ocaml4.02-ppx-custom-printf)
+ ("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-fields-conv" ,ocaml4.02-ppx-fields-conv)
+ ("ppx-inline-test" ,ocaml4.02-ppx-inline-test)
+ ("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("ppx-variants-conv" ,ocaml4.02-ppx-variants-conv)
+ ("re" ,ocaml4.02-re)
+ ("sexplib" ,ocaml4.02-sexplib)
+ ("variantslib" ,ocaml4.02-variantslib)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_expect/")
(synopsis "Cram like framework for OCaml")
(description "Expect-test is a framework for writing tests in OCaml, similar
@@ -2955,66 +3814,72 @@ output-generating code, interleaved with %expect extension expressions to denote
the expected output.")
(license license:asl2.0)))
-(define-public ocaml-ppx-jane
+(define-public ocaml4.02-ppx-jane
(package
- (name "ocaml-ppx-jane")
+ (name "ocaml4.02-ppx-jane")
(version "113.33.03")
(source (janestreet-origin "ppx_jane" version
"0bjxkhmzgm6x9dcvjwybbccn34khbvyyjimcbaja30fp6qcqk5yl"))
(build-system ocaml-build-system)
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
("opam" ,opam)))
(propagated-inputs
- `(("ppx-assert" ,ocaml-ppx-assert)
- ("ppx-bench" ,ocaml-ppx-bench)
- ("ppx-bin-prot" ,ocaml-ppx-bin-prot)
- ("ppx-compare" ,ocaml-ppx-compare)
- ("ppx-custom-printf" ,ocaml-ppx-custom-printf)
- ("ppx-deriving" ,ocaml-ppx-deriving)
- ("ppx-enumerate" ,ocaml-ppx-enumerate)
- ("ppx-expect" ,ocaml-ppx-expect)
- ("ppx-fail" ,ocaml-ppx-fail)
- ("ppx-fields-conv" ,ocaml-ppx-fields-conv)
- ("ppx-here" ,ocaml-ppx-here)
- ("ppx-inline-test" ,ocaml-ppx-inline-test)
- ("ppx-let" ,ocaml-ppx-let)
- ("ppx-pipebang" ,ocaml-ppx-pipebang)
- ("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("ppx-sexp-message" ,ocaml-ppx-sexp-message)
- ("ppx-sexp-value" ,ocaml-ppx-sexp-value)
- ("ppx-typerep-conv" ,ocaml-ppx-typerep-conv)
- ("ppx-variants-conv" ,ocaml-ppx-variants-conv)))
- (arguments janestreet-arguments)
+ `(("ppx-assert" ,ocaml4.02-ppx-assert)
+ ("ppx-bench" ,ocaml4.02-ppx-bench)
+ ("ppx-bin-prot" ,ocaml4.02-ppx-bin-prot)
+ ("ppx-compare" ,ocaml4.02-ppx-compare)
+ ("ppx-custom-printf" ,ocaml4.02-ppx-custom-printf)
+ ("ppx-deriving" ,ocaml4.02-ppx-deriving)
+ ("ppx-enumerate" ,ocaml4.02-ppx-enumerate)
+ ("ppx-expect" ,ocaml4.02-ppx-expect)
+ ("ppx-fail" ,ocaml4.02-ppx-fail)
+ ("ppx-fields-conv" ,ocaml4.02-ppx-fields-conv)
+ ("ppx-here" ,ocaml4.02-ppx-here)
+ ("ppx-inline-test" ,ocaml4.02-ppx-inline-test)
+ ("ppx-let" ,ocaml4.02-ppx-let)
+ ("ppx-pipebang" ,ocaml4.02-ppx-pipebang)
+ ("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("ppx-sexp-message" ,ocaml4.02-ppx-sexp-message)
+ ("ppx-sexp-value" ,ocaml4.02-ppx-sexp-value)
+ ("ppx-typerep-conv" ,ocaml4.02-ppx-typerep-conv)
+ ("ppx-variants-conv" ,ocaml4.02-ppx-variants-conv)))
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/ppx_jane/")
(synopsis "Standard Jane Street ppx rewriters")
(description "Ppx_jane is a ppx_driver including all standard ppx rewriters.")
(license license:asl2.0)))
-(define-public ocaml-core-kernel
+(define-public ocaml4.02-core-kernel
(package
- (name "ocaml-core-kernel")
+ (name "ocaml4.02-core-kernel")
(version "113.33.03")
(source (janestreet-origin "core_kernel" version
"0fl23jrwivixawhxinbwaw9cabqnzn7fini7dxpxjjvkxdc8ip5y"))
(native-inputs
- `(("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ `(("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("bin_prot" ,ocaml-bin-prot)
- ("ppx-assert" ,ocaml-ppx-assert)
- ("ppx-bench" ,ocaml-ppx-bench)
- ("ppx-driver" ,ocaml-ppx-driver)
- ("ppx-expect" ,ocaml-ppx-expect)
- ("ppx-inline-test" ,ocaml-ppx-inline-test)
- ("typerep" ,ocaml-typerep)
- ("sexplib" ,ocaml-sexplib)
- ("variantslib" ,ocaml-variantslib)
- ("result" ,ocaml-result)
- ("fieldslib" ,ocaml-fieldslib)))
+ `(("bin_prot" ,ocaml4.02-bin-prot)
+ ("ppx-assert" ,ocaml4.02-ppx-assert)
+ ("ppx-bench" ,ocaml4.02-ppx-bench)
+ ("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("ppx-expect" ,ocaml4.02-ppx-expect)
+ ("ppx-inline-test" ,ocaml4.02-ppx-inline-test)
+ ("typerep" ,ocaml4.02-typerep)
+ ("sexplib" ,ocaml4.02-sexplib)
+ ("variantslib" ,ocaml4.02-variantslib)
+ ("result" ,ocaml4.02-result)
+ ("fieldslib" ,ocaml4.02-fieldslib)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/core_kernel/")
(synopsis "Portable standard library for OCaml")
(description "Core is an alternative to the OCaml standard library.
@@ -3023,127 +3888,145 @@ Core_kernel is the system-independent part of Core. It is aimed for cases when
the full Core is not available, such as in Javascript.")
(license license:asl2.0)))
-(define-public ocaml-async-kernel
+(define-public ocaml4.02-async-kernel
(package
- (name "ocaml-async-kernel")
+ (name "ocaml4.02-async-kernel")
(version "113.33.03")
(source (janestreet-origin "async_kernel" version
"04bjsaa23j831r09r38x6xx9nhryvp0z5ihickvhxqa4fb2snyvd"))
(native-inputs
`(("oasis" ,ocaml-oasis)
- ("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ ("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("core-kernel" ,ocaml-core-kernel)))
+ `(("core-kernel" ,ocaml4.02-core-kernel)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/async_kernel/")
(synopsis "Monadic concurrency library")
(description "Async-kernel is a library for concurrent programming in OCaml.")
(license license:asl2.0)))
-(define-public ocaml-async-rpc-kernel
+(define-public ocaml4.02-async-rpc-kernel
(package
- (name "ocaml-async-rpc-kernel")
+ (name "ocaml4.02-async-rpc-kernel")
(version "113.33.03")
(source (janestreet-origin "async_rpc_kernel" version
"0y97h9pkb00v7jpf87m8cbb0ffkclj9g26ph6sq97q8dpisnkjwh"))
(native-inputs
`(("oasis" ,ocaml-oasis)
- ("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ ("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("async-kernel" ,ocaml-async-kernel)))
+ `(("async-kernel" ,ocaml4.02-async-kernel)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/async_rpc_kernel/")
(synopsis "Platform-independent core of the Async RPC library")
(description "Async_rpc_kernel is the platform-independent core of
the Async RPC library.")
(license license:asl2.0)))
-(define-public ocaml-core
+(define-public ocaml4.02-core
(package
- (name "ocaml-core")
+ (name "ocaml4.02-core")
(version "113.33.03")
(source (janestreet-origin "core" version
"1znll157qg56g9d3247fjibv1hxv3r9wxgr4nhy19j2vzdh6a268"))
(native-inputs
`(("oasis" ,ocaml-oasis)
- ("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ ("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("core-kernel" ,ocaml-core-kernel)))
+ `(("core-kernel" ,ocaml4.02-core-kernel)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/core/")
(synopsis "Alternative to OCaml's standard library")
(description "The Core suite of libraries is an alternative to OCaml's
standard library that was developed by Jane Street.")
(license license:asl2.0)))
-(define-public ocaml-async-unix
+(define-public ocaml4.02-async-unix
(package
- (name "ocaml-async-unix")
+ (name "ocaml4.02-async-unix")
(version "113.33.03")
(source (janestreet-origin "async_unix" version
"1fwl0lfrizllcfjk8hk8m7lsz9ha2jg6qgk4gssfyz377qvpcq4h"))
(native-inputs
`(("oasis" ,ocaml-oasis)
- ("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ ("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("async-kernel" ,ocaml-async-kernel)
- ("core" ,ocaml-core)))
+ `(("async-kernel" ,ocaml4.02-async-kernel)
+ ("core" ,ocaml4.02-core)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/async_unix")
(synopsis "Asynchronous execution library for Unix")
(description "Async_unix is an asynchronous execution library for Unix.")
(license license:asl2.0)))
-(define-public ocaml-async-extra
+(define-public ocaml4.02-async-extra
(package
- (name "ocaml-async-extra")
+ (name "ocaml4.02-async-extra")
(version "113.33.03")
(source (janestreet-origin "async_extra" version
"1si8jgiq5xh5sl9f2b7f9p17p7zx5h1pg557x2cxywi2x7pxqg4f"))
(native-inputs
`(("oasis" ,ocaml-oasis)
- ("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ ("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("async-rpc-kernel" ,ocaml-async-rpc-kernel)
- ("async-unix" ,ocaml-async-unix)
- ("core" ,ocaml-core)))
+ `(("async-rpc-kernel" ,ocaml4.02-async-rpc-kernel)
+ ("async-unix" ,ocaml4.02-async-unix)
+ ("core" ,ocaml4.02-core)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/async_extra")
(synopsis "Extra functionnalities for the async library")
(description "Async_extra provides additional functionnalities for the
async library.")
(license license:asl2.0)))
-(define-public ocaml-async
+(define-public ocaml4.02-async
(package
- (name "ocaml-async")
+ (name "ocaml4.02-async")
(version "113.33.03")
(source (janestreet-origin "async" version
"0210fyhcs12kpmmd26015bgivkfd2wqkyn3c5wd7688d0f872y25"))
(native-inputs
`(("oasis" ,ocaml-oasis)
- ("js-build-tools" ,ocaml-js-build-tools)
- ("ppx-jane" ,ocaml-ppx-jane)
+ ("js-build-tools" ,ocaml4.02-js-build-tools)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
("opam" ,opam)))
(propagated-inputs
- `(("async-extra" ,ocaml-async-extra)))
+ `(("async-extra" ,ocaml4.02-async-extra)))
(build-system ocaml-build-system)
- (arguments janestreet-arguments)
+ (arguments
+ (ensure-keyword-arguments janestreet-arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib)))
(home-page "https://github.com/janestreet/async")
(synopsis "Monadic concurrency library")
(description "Async is a library for concurrent programming in OCaml.")
@@ -3162,7 +4045,9 @@ async library.")
"0hwj09rnzjs0m0kazz5h2mgs6p95j0zlga8cda5srnzqmzhniwkn"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
- (native-inputs `(("cppo" ,ocaml-cppo)))
+ (native-inputs
+ `(("cppo" ,ocaml-cppo)
+ ("ocamlbuild" ,ocamlbuild)))
(home-page "https://github.com/OCamlPro/ocplib-endian")
(synopsis "Optimised functions to read and write int16/32/64 from strings
and bigarrays")
@@ -3172,9 +4057,12 @@ strings, bytes and bigstring (Bigarrys of chars), and provides submodules for
big- and little-endian, with their unsafe counter-parts.")
(license license:lgpl2.1)))
-(define-public ocaml-cstruct
+(define-public ocaml4.02-ocplib-endian
+ (package-with-ocaml4.02 ocaml-ocplib-endian))
+
+(define-public ocaml4.02-cstruct
(package
- (name "ocaml-cstruct")
+ (name "ocaml4.02-cstruct")
(version "2.3.1")
(source (origin
(method url-fetch)
@@ -3186,7 +4074,9 @@ big- and little-endian, with their unsafe counter-parts.")
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(arguments
- `(#:configure-flags
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:configure-flags
(list "--enable-lwt" "--enable-async")
#:phases
(modify-phases %standard-phases
@@ -3199,14 +4089,14 @@ big- and little-endian, with their unsafe counter-parts.")
(symlink (string-append lib "/dllcstruct_stubs.so")
(string-append stubs "/dllcstruct_stubs.so"))))))))
(native-inputs
- `(("ounit" ,ocaml-ounit)
- ("ppx-tools" ,ocaml-ppx-tools)
- ("camlp4" ,camlp4)))
+ `(("ounit" ,ocaml4.02-ounit)
+ ("ppx-tools" ,ocaml4.02-ppx-tools)
+ ("camlp4" ,camlp4-4.02)))
(propagated-inputs
- `(("ocplib-endian" ,ocaml-ocplib-endian)
- ("lwt" ,ocaml-lwt)
- ("async" ,ocaml-async)
- ("sexplib" ,ocaml-sexplib)))
+ `(("ocplib-endian" ,ocaml4.02-ocplib-endian)
+ ("lwt" ,ocaml4.02-lwt)
+ ("async" ,ocaml4.02-async)
+ ("sexplib" ,ocaml4.02-sexplib)))
(home-page "https://github.com/mirage/ocaml-cstruct")
(synopsis "Access C structures via a camlp4 extension")
(description "Cstruct is a library and syntax extension to make it easier
@@ -3214,9 +4104,9 @@ to access C-like structures directly from OCaml. It supports both reading and
writing to these structures, and they are accessed via the Bigarray module.")
(license license:isc)))
-(define-public ocaml-hex
+(define-public ocaml4.02-hex
(package
- (name "ocaml-hex")
+ (name "ocaml4.02-hex")
(version "1.0.0")
(source (origin
(method url-fetch)
@@ -3227,15 +4117,19 @@ writing to these structures, and they are accessed via the Bigarray module.")
"0s63g0b8gfv2xm6fv6xg7bva8h76b5pcjb0zw3f8cygs0lq9072v"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
- (propagated-inputs `(("cstruct" ,ocaml-cstruct)))
+ (arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib))
+ (propagated-inputs
+ `(("cstruct" ,ocaml4.02-cstruct)))
(home-page "https://github.com/mirage/ocaml-hex/")
(synopsis "Minimal library providing hexadecimal converters")
(description "Hex is a minimal library providing hexadecimal converters.")
(license license:isc)))
-(define-public ocaml-ezjsonm
+(define-public ocaml4.02-ezjsonm
(package
- (name "ocaml-ezjsonm")
+ (name "ocaml4.02-ezjsonm")
(version "0.4.3")
(source (origin
(method url-fetch)
@@ -3247,14 +4141,16 @@ writing to these structures, and they are accessed via the Bigarray module.")
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(native-inputs
- `(("alcotest" ,ocaml-alcotest)))
+ `(("alcotest" ,ocaml4.02-alcotest)))
(propagated-inputs
- `(("hex" ,ocaml-hex)
- ("jsonm" ,ocaml-jsonm)
- ("lwt" ,ocaml-lwt)
- ("sexplib" ,ocaml-sexplib)))
+ `(("hex" ,ocaml4.02-hex)
+ ("jsonm" ,ocaml4.02-jsonm)
+ ("lwt" ,ocaml4.02-lwt)
+ ("sexplib" ,ocaml4.02-sexplib)))
(arguments
- `(#:configure-flags (list "--enable-lwt")))
+ `(#:configure-flags (list "--enable-lwt")
+ #:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib))
(home-page "https://github.com/mirage/ezjsonm/")
(synopsis "Read and write JSON data")
(description "Ezjsonm provides more convenient (but far less flexible) input
@@ -3263,9 +4159,9 @@ the need to write signal code, which is useful for quick scripts that manipulate
JSON.")
(license license:isc)))
-(define-public ocaml-uri
+(define-public ocaml4.02-uri
(package
- (name "ocaml-uri")
+ (name "ocaml4.02-uri")
(version "1.9.2")
(source (origin
(method url-fetch)
@@ -3276,14 +4172,17 @@ JSON.")
"02bzrag79prx261rxf9mlak749pwf4flpfl8p012x1xznv9m0clc"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
+ (arguments
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib))
(native-inputs
- `(("ounit" ,ocaml-ounit)))
+ `(("ounit" ,ocaml4.02-ounit)))
(propagated-inputs
- `(("ppx-sexp-conv" ,ocaml-ppx-sexp-conv)
- ("re" ,ocaml-re)
- ("ppx-deriving" ,ocaml-ppx-deriving)
- ("sexplib" ,ocaml-sexplib)
- ("stringext" ,ocaml-stringext)))
+ `(("ppx-sexp-conv" ,ocaml4.02-ppx-sexp-conv)
+ ("re" ,ocaml4.02-re)
+ ("ppx-deriving" ,ocaml4.02-ppx-deriving)
+ ("sexplib" ,ocaml4.02-sexplib)
+ ("stringext" ,ocaml4.02-stringext)))
(home-page "https://github.com/mirage/ocaml-uri")
(synopsis "RFC3986 URI/URL parsing library")
(description "OCaml-uri is a library for parsing URI/URL in the RFC3986 format.")
@@ -3312,6 +4211,9 @@ JSON.")
Format module of the OCaml standard library.")
(license license:bsd-3)))
+(define-public ocaml4.02-easy-format
+ (package-with-ocaml4.02 ocaml-easy-format))
+
(define-public optcomp
(package
(name "optcomp")
@@ -3326,13 +4228,15 @@ Format module of the OCaml standard library.")
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(arguments
- `(#:use-make? #t
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:use-make? #t
#:make-flags
(list (string-append "BUILDFLAGS=\"-cflags -I,"
(assoc-ref %build-inputs "camlp4")
"/lib/ocaml/site-lib/camlp4/Camlp4Parsers\""))))
- (native-inputs `(("camlp4" ,camlp4)))
- (propagated-inputs `(("camlp4" ,camlp4)))
+ (native-inputs `(("camlp4" ,camlp4-4.02)))
+ (propagated-inputs `(("camlp4" ,camlp4-4.02)))
(home-page "https://github.com/diml/optcomp")
(synopsis "Optional compilation for OCaml")
(description "Optcomp provides an optional compilation facility with
@@ -3342,14 +4246,14 @@ cpp-like directives.")
(define-public ocaml-piqilib
(package
(name "ocaml-piqilib")
- (version "0.6.13")
+ (version "0.6.14")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/alavrik/piqi/archive/v"
version ".tar.gz"))
(sha256
(base32
- "1whqr2bb3gds2zmrzqnv8vqka9928w4lx6mi6g244kmbwb2h8d8l"))
+ "1ssccnwqzfyf7syfq2fv4zyhwayxwd75rhq9y28mvq1w6qbww4l7"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(arguments
@@ -3365,14 +4269,17 @@ cpp-like directives.")
(let ((out (assoc-ref outputs "out")))
(substitute* "make/OCamlMakefile"
(("/bin/sh") (which "bash")))
- (zero? (system* "./configure" "--prefix" out "--ocaml-libdir"
- (string-append out "/lib/ocaml/site-lib"))))))
+ (invoke "./configure" "--prefix" out "--ocaml-libdir"
+ (string-append out "/lib/ocaml/site-lib")))
+ #t))
(add-after 'build 'build-ocaml
(lambda* (#:key outputs #:allow-other-keys)
- (zero? (system* "make" "ocaml"))))
+ (invoke "make" "ocaml")
+ #t))
(add-after 'install 'install-ocaml
(lambda* (#:key outputs #:allow-other-keys)
- (zero? (system* "make" "ocaml-install"))))
+ (invoke "make" "ocaml-install")
+ #t))
(add-after 'install-ocaml 'link-stubs
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
@@ -3388,15 +4295,18 @@ cpp-like directives.")
(propagated-inputs
`(("xmlm" ,ocaml-xmlm)
("ulex" ,ocaml-ulex)
- ("optcomp" ,optcomp)
("easy-format" ,ocaml-easy-format)
("base64" ,ocaml-base64)))
+ (home-page "http://www.cduce.org/download.html#side")
(home-page "http://piqi.org")
(synopsis "Data serialization and conversion library")
(description "Piqilib is the common library used by the piqi command-line
tool and piqi-ocaml.")
(license license:asl2.0)))
+(define-public ocaml4.02-piqilib
+ (package-with-ocaml4.02 ocaml-piqilib))
+
(define-public ocaml-uuidm
(package
(name "ocaml-uuidm")
@@ -3416,7 +4326,8 @@ tool and piqi-ocaml.")
(modify-phases %standard-phases
(delete 'configure))))
(native-inputs
- `(("opam" ,opam)))
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)))
(propagated-inputs
`(("cmdliner" ,ocaml-cmdliner)
("topkg" ,ocaml-topkg)))
@@ -3427,21 +4338,24 @@ unique identifiers (UUIDs) version 3, 5 (named based with MD5, SHA-1 hashing)
and 4 (random based) according to RFC 4122.")
(license license:isc)))
+(define-public ocaml4.02-uuidm
+ (package-with-ocaml4.02 ocaml-uuidm))
+
(define-public ocaml-graph
(package
(name "ocaml-graph")
- (version "1.8.7")
+ (version "1.8.8")
(source (origin
(method url-fetch)
(uri (string-append "http://ocamlgraph.lri.fr/download/"
"ocamlgraph-" version ".tar.gz"))
(sha256
(base32
- "1845r537swjil2fcj7lgbibc2zybfwqqasrd2s7bncajs83cl1nz"))
- (patches (search-patches "ocaml-graph-honor-source-date-epoch.patch"))))
+ "0m9g16wrrr86gw4fz2fazrh8nkqms0n863w7ndcvrmyafgxvxsnr"))))
(build-system ocaml-build-system)
(arguments
`(#:install-target "install-findlib"
+ #:tests? #f
#:phases
(modify-phases %standard-phases
(add-before 'configure 'set-shell
@@ -3454,10 +4368,13 @@ and 4 (random based) according to RFC 4122.")
(description "OCamlgraph is a generic graph library for OCaml.")
(license license:lgpl2.1)))
+(define-public ocaml4.02-graph
+ (package-with-ocaml4.02 ocaml-graph))
+
(define-public ocaml-piqi
(package
(name "ocaml-piqi")
- (version "0.7.5")
+ (version "0.7.6")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/alavrik/piqi-ocaml/"
@@ -3465,7 +4382,7 @@ and 4 (random based) according to RFC 4122.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0ngz6y8i98i5v2ma8nk6mc83pdsmf2z0ks7m3xi6clfg3zqbddrv"))))
+ "0da0v2v28aj65b0cwpvvmcqyrfvz94pp3j5zgfdr1jrl5s37c21g"))))
(build-system ocaml-build-system)
(arguments
`(#:make-flags
@@ -3477,9 +4394,13 @@ and 4 (random based) according to RFC 4122.")
(delete 'configure))))
(native-inputs
`(("which" ,which)
+ ("camlp4" ,camlp4)
("protobuf" ,protobuf))) ; for tests
(propagated-inputs
- `(("piqilib" ,ocaml-piqilib)))
+ `(("num" ,ocaml-num)
+ ("piqilib" ,ocaml-piqilib)))
+ (properties
+ `((ocaml4.02-variant . ,(delay ocaml4.02-piqi))))
(home-page "https://github.com/alavrik/piqi-ocaml")
(synopsis "Protocol serialization system for OCaml")
(description "Piqi is a multi-format data serialization system for OCaml.
@@ -3487,67 +4408,73 @@ It provides a uniform interface for serializing OCaml data structures to JSON,
XML and Protocol Buffers formats.")
(license license:asl2.0)))
+(define-public ocaml4.02-piqi
+ (let ((base (package-with-ocaml4.02 (strip-ocaml4.02-variant ocaml-piqi))))
+ (package
+ (inherit base)
+ (propagated-inputs
+ `(("piqilib" ,ocaml4.02-piqilib))))))
+
(define-public bap
(package
(name "bap")
- (version "1.1.0")
+ (version "1.3.0")
(home-page "https://github.com/BinaryAnalysisPlatform/bap")
(source (origin
(method url-fetch)
(uri (string-append home-page "/archive/v" version ".tar.gz"))
(sha256
(base32
- "1ms95m4j1qrmy7zqmsn2izh7gq68lnmssl7chyhk977kd3sxj66m"))
+ "0v95v9mp7mg8fj25ry0w7566zd9xp6cs8nnqj4l38q54fb1hfav9"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system ocaml-build-system)
(native-inputs
- `(("oasis" ,ocaml-oasis)
+ `(("oasis" ,ocaml4.02-oasis)
("clang" ,clang-3.8)
- ("ounit" ,ocaml-ounit)))
+ ("ounit" ,ocaml4.02-ounit)))
(propagated-inputs
- `(("core-kernel" ,ocaml-core-kernel)
- ("ppx-driver" ,ocaml-ppx-driver)
- ("uri" ,ocaml-uri)
+ `(("core-kernel" ,ocaml4.02-core-kernel)
+ ("ppx-driver" ,ocaml4.02-ppx-driver)
+ ("bin-prot" ,ocaml4.02-bin-prot)
+ ("uri" ,ocaml4.02-uri)
("llvm" ,llvm-3.8)
("gmp" ,gmp)
("clang-runtime" ,clang-runtime)
- ("fileutils" ,ocaml-fileutils)
- ("cmdliner" ,ocaml-cmdliner)
- ("zarith" ,ocaml-zarith)
- ("uuidm" ,ocaml-uuidm)
- ("camlzip" ,camlzip)
+ ("fileutils" ,ocaml4.02-fileutils)
+ ("cmdliner" ,ocaml4.02-cmdliner)
+ ("zarith" ,ocaml4.02-zarith)
+ ("uuidm" ,ocaml4.02-uuidm)
+ ("camlzip" ,ocaml4.02-camlzip)
("frontc" ,ocaml-frontc)
- ("ezjsonm" ,ocaml-ezjsonm)
- ("ocurl" ,ocaml-ocurl)
- ("piqi" ,ocaml-piqi)
- ("ocamlgraph" ,ocaml-graph)
- ("bitstring" ,ocaml-bitstring)
- ("ppx-jane" ,ocaml-ppx-jane)
- ("re" ,ocaml-re)))
+ ("ezjsonm" ,ocaml4.02-ezjsonm)
+ ("ocurl" ,ocaml4.02-ocurl)
+ ("piqi" ,ocaml4.02-piqi)
+ ("ocamlgraph" ,ocaml4.02-graph)
+ ("bitstring" ,ocaml4.02-bitstring)
+ ("ppx-jane" ,ocaml4.02-ppx-jane)
+ ("re" ,ocaml4.02-re)))
(inputs `(("llvm" ,llvm-3.8)))
(arguments
- `(#:use-make? #t
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:use-make? #t
#:phases
(modify-phases %standard-phases
(replace 'configure
- (lambda* (#:key outputs #:allow-other-keys)
- (zero? (system* "./configure" "--prefix"
- (assoc-ref outputs "out")
- "--libdir"
- (string-append
- (assoc-ref outputs "out")
- "/lib/ocaml/site-lib")
- "--with-llvm-version=3.8"
- "--with-llvm-config=llvm-config"
- "--enable-everything"))))
- (add-after 'install 'link-stubs
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (stubs (string-append out "/lib/ocaml/site-lib/stubslibs"))
- (lib (string-append out "/lib/ocaml/site-lib/bap-plugin-llvm")))
- (mkdir-p stubs)
- (symlink (string-append lib "/dllllvm_plugin_stubs.so")
- (string-append stubs "/dllllvm_plugin_stubs.so"))))))))
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ (invoke "./configure" "--prefix"
+ (assoc-ref outputs "out")
+ "--libdir"
+ (string-append
+ (assoc-ref outputs "out")
+ "/lib/ocaml/site-lib")
+ "--with-llvm-version=3.8"
+ "--with-llvm-config=llvm-config"
+ "--enable-everything")
+ (substitute* "plugins/objdump/objdump_main.ml"
+ (("Re_perl") "Re.Perl"))
+ (substitute* "oasis/objdump"
+ (("re.pcre") "re.pcre, re.perl")))))))
(synopsis "Binary Analysis Platform")
(description "Binary Analysis Platform is a framework for writing program
analysis tools, that target binary files. The framework consists of a plethora
@@ -3558,23 +4485,33 @@ the plugins facilitate extensibility, and the frontends serve as entry points.")
(define-public ocaml-camomile
(package
(name "ocaml-camomile")
- (version "0.8.5")
+ (version "1.0.1")
(home-page "https://github.com/yoriyuki/Camomile")
(source (origin
(method url-fetch)
- (uri (string-append home-page "/releases/download/rel-" version
- "/camomile-" version ".tar.bz2"))
+ (uri (string-append home-page "/releases/download/" version
+ "/camomile-" version ".tbz"))
(sha256
(base32
- "003ikpvpaliy5hblhckfmln34zqz0mk3y2m1fqvbjngh3h2np045"))))
+ "01ssjrqz41jvrqh27jxnh9cx7ywi9b5sgsykd00i7z9nrcwhlfy2"))))
(build-system ocaml-build-system)
- (native-inputs `(("camlp4" ,camlp4)))
+ (native-inputs
+ `(("camlp4" ,camlp4)
+ ("dune" ,dune)))
(arguments
`(#:phases
(modify-phases %standard-phases
- (add-before 'configure 'fix-bin/sh
+ (delete 'configure)
+ (replace 'build
(lambda _
- (setenv "CONFIG_SHELL" (which "bash")))))))
+ (invoke "dune" "build" "@install" "--profile" "release")
+ #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))
+ #:tests? #f))
(synopsis "Comprehensive Unicode library")
(description "Camomile is a Unicode library for OCaml. Camomile provides
Unicode character type, UTF-8, UTF-16, UTF-32 strings, conversion to/from about
@@ -3583,6 +4520,9 @@ library is currently designed for Unicode Standard 3.2.")
;; with an exception for linked libraries to use a different license
(license license:lgpl2.0+)))
+(define-public ocaml4.02-camomile
+ (package-with-ocaml4.02 ocaml-camomile))
+
(define-public ocaml-jbuilder
(package
(name "ocaml-jbuilder")
@@ -3595,10 +4535,12 @@ library is currently designed for Unicode Standard 3.2.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0gcy52y0mkg450yxwszp3lww303a1154566r8jb4hh5l61dh4dwj"))))
+ "1cy07pwvbrlysszs938yd74yyvvbgkffpb82qrjph77zf0h2gdi7"))))
(build-system ocaml-build-system)
(arguments
- `(#:phases
+ `(#:ocaml ,ocaml-4.02
+ #:findlib ,ocaml4.02-findlib
+ #:phases
(modify-phases %standard-phases
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
@@ -3606,7 +4548,7 @@ library is currently designed for Unicode Standard 3.2.")
(setenv "PREFIX" out))
#t)))))
(native-inputs
- `(("menhir" ,ocaml-menhir)))
+ `(("menhir" ,ocaml4.02-menhir)))
(propagated-inputs
`(("opam" ,opam)))
(home-page "https://github.com/janestreet/jbuilder")
@@ -3654,10 +4596,13 @@ to write text editors, edition widgets, readlines, etc. You just have to
connect an engine to your inputs and rendering functions to get an editor.")
(license license:bsd-3)))
+(define-public ocaml4.02-zed
+ (package-with-ocaml4.02 ocaml-zed))
+
(define-public ocaml-lambda-term
(package
(name "ocaml-lambda-term")
- (version "1.11")
+ (version "1.13")
(source
(origin
(method url-fetch)
@@ -3665,26 +4610,27 @@ connect an engine to your inputs and rendering functions to get an editor.")
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
- (base32 "10lx1jqgmmfwwlv64di4a8nia9l53v7179z70n9fx6aq5l7r8nba"))))
+ (base32 "1hy5ryagqclgdm9lzh1qil5mrynlypv7mn6qm858hdcnmz9zzn0l"))))
(build-system ocaml-build-system)
(arguments
- `(#:test-target "test"
- #:phases
+ `(#:phases
(modify-phases %standard-phases
(delete 'configure)
- ;; currently, ocaml-lwt is an old version of lwt from before lwt.react
- ;; was split into a separate module called lwt_react
- (add-before 'build 'use-old-lwt-react-name
+ (replace 'build
(lambda _
- (substitute* "src/jbuild" (("lwt_react") "lwt.react"))))
+ (invoke "dune" "build" "@install" "--profile" "release")
+ #t))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
- (let ((out (assoc-ref outputs "out")))
- (zero? (system* "jbuilder" "install" "--prefix" out))))))))
+ (invoke "dune" "install"
+ "--prefix" (assoc-ref outputs "out"))
+ #t)))
+ #:tests? #f))
(native-inputs
- `(("jbuilder" ,ocaml-jbuilder)))
+ `(("dune" ,dune)))
(propagated-inputs
`(("lwt" ,ocaml-lwt)
+ ("lwt-log" ,ocaml-lwt-log)
("zed" ,ocaml-zed)))
(home-page "https://github.com/diml/lambda-term")
(synopsis "Terminal manipulation library for OCaml")
@@ -3696,18 +4642,21 @@ manipulation than, for example, ncurses, by providing a native OCaml interface
instead of bindings to a C library.")
(license license:bsd-3)))
+(define-public ocaml4.02-lambda-term
+ (package-with-ocaml4.02 ocaml-lambda-term))
+
(define-public ocaml-utop
(package
(name "ocaml-utop")
- (version "2.0.2")
+ (version "2.2.0")
(source (origin
(method url-fetch)
- (uri (string-append "https://github.com/diml/utop/archive/"
+ (uri (string-append "https://github.com/ocaml-community/utop/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0rglznh4prcix8spi3f060jz2gngk7x8vkd291fxs10b88aqcpxf"))))
+ "1414snwmqaxs1x8wbpjf6fn3jsl01hq0phrr7639xmb5vh15mgd4"))))
(build-system gnu-build-system)
(arguments
`(#:test-target "test"
@@ -3761,6 +4710,8 @@ sensitive completion, colors, and more.")
#:phases
(modify-phases %standard-phases
(delete 'configure))))
+ (native-inputs
+ `(("ocamlbuild" ,ocamlbuild)))
(inputs
`(("topkg" ,ocaml-topkg)
("opam" ,opam)))
@@ -3773,7 +4724,7 @@ long and size_t whose sizes depend on the host platform.")
(define-public ocaml-ctypes
(package
(name "ocaml-ctypes")
- (version "0.13.1")
+ (version "0.14.0")
(home-page "https://github.com/ocamllabs/ocaml-ctypes")
(source (origin
(method url-fetch)
@@ -3781,10 +4732,11 @@ long and size_t whose sizes depend on the host platform.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "17w0pr5k0zjcjns4y9n36rjpfl35zhvp3h8ggqs9lz12qhshdk2m"))))
+ "0zrsd42q2nciyg9375g2kydqax6ay299rhyfgms59qiw7d9ylyp9"))))
(build-system ocaml-build-system)
(arguments
- `(#:make-flags
+ `(#:tests? #f; require an old lwt
+ #:make-flags
(list (string-append "INSTALL_HEADERS = $(wildcard $($(PROJECT).dir)/*.h)"))
#:phases
(modify-phases %standard-phases
@@ -3832,7 +4784,8 @@ without writing or generating any C!")
`(("topkg" ,ocaml-topkg)
("opam" ,opam)))
(native-inputs
- `(("astring" ,ocaml-astring)))
+ `(("astring" ,ocaml-astring)
+ ("ocamlbuild" ,ocamlbuild)))
(synopsis "OCamlbuild plugin for C stubs")
(description "Ocb-stubblr is about ten lines of code that you need to
repeat over, over, over and over again if you are using ocamlbuild to build
@@ -3860,7 +4813,8 @@ OCaml projects that contain C stubs.")
(modify-phases %standard-phases
(delete 'configure))))
(native-inputs
- `(("opam" ,opam)
+ `(("ocamlbuild" ,ocamlbuild)
+ ("opam" ,opam)
("pkg-config" ,pkg-config)))
(inputs
`(("topkg" ,ocaml-topkg)
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index fe784ffaa1..471a08b799 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -343,7 +343,8 @@ the Nix package manager.")
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(invoke "make" "install-binPROGRAMS"
- "install-nodist_pkglibexecSCRIPTS")
+ "install-nodist_pkglibexecSCRIPTS"
+ "install-nodist_libexecSCRIPTS") ;guix-authenticate
;; We need to tell 'guix-daemon' which 'guix' command to use.
;; Here we use a questionable hack where we hard-code root's
@@ -568,13 +569,13 @@ transactions from C or Python.")
(define-public diffoscope
(package
(name "diffoscope")
- (version "104")
+ (version "105")
(source (origin
(method url-fetch)
(uri (pypi-uri name version))
(sha256
(base32
- "0vnfhnvqvdwgh1sh2lmwad8jk2vjvq76p5xm3pfgxdik2yblmvqd"))))
+ "0bqkwvrvlvybqfi73qv1k5xic2qzw5lv20imqadf1wc4l8vc0vq3"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
diff --git a/gnu/packages/patches/clamav-config-llvm-libs.patch b/gnu/packages/patches/clamav-config-llvm-libs.patch
new file mode 100644
index 0000000000..054264ee2e
--- /dev/null
+++ b/gnu/packages/patches/clamav-config-llvm-libs.patch
@@ -0,0 +1,14 @@
+Our llvm does not contain a single top-level library, so consult llvm-config
+for the libraries that need to be linked against.
+
+--- clamav-0.100.2/libclamav/c++/configure.ac 2018-09-19 14:29:07.000000000 -0500
++++ clamav-0.100.2/libclamav/c++/configure.ac 2018-10-06 21:45:09.377249158 -0500
+@@ -105,7 +105,7 @@
+
+ if test "x$llvm_linking" = "xdynamic"; then
+ AC_SUBST(LLVMCONFIG_LDFLAGS, [`$llvmconfig --ldflags`])
+- AC_SUBST(LLVMCONFIG_LIBS, [-lLLVM-$llvmver])
++ AC_SUBST(LLVMCONFIG_LIBS, [`$llvmconfig --libs $llvmcomp`])
+ AC_SUBST(LLVMCONFIG_LIBFILES, [])
+ else
+ if test $llvmver_test -ge 350; then
diff --git a/gnu/packages/patches/clamav-system-tomsfastmath.patch b/gnu/packages/patches/clamav-system-tomsfastmath.patch
new file mode 100644
index 0000000000..07ab79f3f7
--- /dev/null
+++ b/gnu/packages/patches/clamav-system-tomsfastmath.patch
@@ -0,0 +1,102 @@
+From 756ff89526b5ffaa7a4f49b1bbecf2ecbd6f85f9 Mon Sep 17 00:00:00 2001
+From: Andreas Cadhalpun <Andreas.Cadhalpun@googlemail.com>
+Date: Wed, 11 Mar 2015 20:03:15 +0100
+Subject: add support for system tomsfastmath
+
+Patch-Name: add-support-for-system-tomsfastmath.patch
+---
+ configure.ac | 2 ++
+ libclamav/Makefile.am | 10 ++++++++--
+ libclamav/bignum.h | 6 +++++-
+ libclamav/xdp.c | 2 +-
+ m4/reorganization/libs/tomsfastmath.m4 | 12 ++++++++++++
+ 5 files changed, 28 insertions(+), 4 deletions(-)
+ create mode 100644 m4/reorganization/libs/tomsfastmath.m4
+
+--- a/configure.ac
++++ b/configure.ac
+@@ -82,6 +82,7 @@ m4_include([m4/reorganization/libs/xml.m
+ m4_include([m4/reorganization/libs/openssl.m4])
+ m4_include([m4/reorganization/libs/json.m4])
+ m4_include([m4/reorganization/libs/pcre.m4])
++m4_include([m4/reorganization/libs/tomsfastmath.m4])
+
+ AM_MAINTAINER_MODE
+ m4_include([m4/reorganization/libs/libz.m4])
+@@ -285,6 +286,7 @@ else
+ fi
+ CL_MSG_STATUS([yara ],[$enable_yara],[$enable_yara])
+ CL_MSG_STATUS([fts ],[yes],[$lfs_fts_msg])
++CL_MSG_STATUS([tomsfastmath],[yes],[$tomsfastmath_msg])
+
+
+ # Yep, downgrading the compiler avoids the bug too:
+--- a/libclamav/Makefile.am
++++ b/libclamav/Makefile.am
+@@ -496,8 +496,10 @@ libclamav_la_SOURCES += yara_arena.c \
+ yara_clam.h
+ endif
+
+-libclamav_la_SOURCES += bignum.h\
+- bignum_fast.h\
++libclamav_la_SOURCES += bignum.h
++
++if !SYSTEM_TOMSFASTMATH
++libclamav_la_SOURCES += bignum_fast.h\
+ tomsfastmath/addsub/fp_add.c\
+ tomsfastmath/addsub/fp_add_d.c\
+ tomsfastmath/addsub/fp_addmod.c\
+@@ -579,6 +581,10 @@ libclamav_la_SOURCES += bignum.h\
+ tomsfastmath/sqr/fp_sqr_comba_generic.c\
+ tomsfastmath/sqr/fp_sqr_comba_small_set.c\
+ tomsfastmath/sqr/fp_sqrmod.c
++else
++libclamav_la_CFLAGS += $(TOMSFASTMATH_CFLAGS)
++libclamav_la_LIBADD += $(TOMSFASTMATH_LIBS)
++endif
+
+ .PHONY: version.h.tmp
+ version.c: version.h
+--- a/libclamav/bignum.h
++++ b/libclamav/bignum.h
+@@ -1,9 +1,13 @@
+ #ifndef BIGNUM_H_
+ #define BIGNUM_H_
+
++#if HAVE_SYSTEM_TOMSFASTMATH
++#include <tfm.h>
++#else
+ #define TFM_CHECK
+-
+ #include "bignum_fast.h"
++#endif
++
+ typedef fp_int mp_int;
+ #define mp_cmp fp_cmp
+ #define mp_toradix_n(a,b,c,d) fp_toradix_n(a,b,c,d)
+--- a/libclamav/xdp.c
++++ b/libclamav/xdp.c
+@@ -57,7 +57,7 @@
+ #include "scanners.h"
+ #include "conv.h"
+ #include "xdp.h"
+-#include "bignum_fast.h"
++#include "bignum.h"
+ #include "filetypes.h"
+
+ static char *dump_xdp(cli_ctx *ctx, const char *start, size_t sz);
+--- /dev/null
++++ b/m4/reorganization/libs/tomsfastmath.m4
+@@ -0,0 +1,12 @@
++dnl Check for system tomsfastmath
++PKG_CHECK_MODULES([TOMSFASTMATH], [tomsfastmath], [have_system_tomsfastmath=yes], [have_system_tomsfastmath=no])
++
++AM_CONDITIONAL([SYSTEM_TOMSFASTMATH], [test "x$have_system_tomsfastmath" = "xyes"])
++
++if test "x$have_system_tomsfastmath" = "xyes"; then
++ AC_DEFINE([HAVE_SYSTEM_TOMSFASTMATH], [1], [link against system-wide tomsfastmath library])
++ tomsfastmath_msg="External, $TOMSFASTMATH_CFLAGS $TOMSFASTMATH_LIBS"
++else
++ AC_DEFINE([HAVE_SYSTEM_TOMSFASTMATH], [0], [don't link against system-wide tomsfastmath library])
++ tomsfastmath_msg="Internal"
++fi
diff --git a/gnu/packages/patches/emacs-realgud-fix-configure-ac.patch b/gnu/packages/patches/emacs-realgud-fix-configure-ac.patch
new file mode 100644
index 0000000000..8165857c87
--- /dev/null
+++ b/gnu/packages/patches/emacs-realgud-fix-configure-ac.patch
@@ -0,0 +1,27 @@
+From a293690f29407ac54a218d6d20c2142e1a0319d1 Mon Sep 17 00:00:00 2001
+From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
+Date: Wed, 31 Oct 2018 00:08:34 -0400
+Subject: [PATCH] configure.ac: Fix NO_CHECK_EMACS_PACKAGES elisp.
+
+Remove the extraneous trailing parenthesis.
+---
+ configure.ac | 3 +--
+ 1 file changed, 1 insertion(+), 2 deletions(-)
+
+diff --git a/configure.ac b/configure.ac
+index de0d932..69bcea7 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -25,8 +25,7 @@ AC_MSG_NOTICE("Checking prerequiste packages")
+ $EMACS -batch -q --no-site-file -eval \
+ '(dolist (package
+ (quote (cl-lib loc-changes load-relative test-simple)))
+- (require package))
+- )'
++ (require package))'
+ fi
+ if test $? -ne 0 ; then
+ AC_MSG_ERROR([Can't continue until above error is corrected.])
+--
+2.19.0
+
diff --git a/gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch b/gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch
index 2056b42356..fd9a4c9401 100644
--- a/gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch
+++ b/gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch
@@ -1,16 +1,28 @@
-From 26cac62fe0154cf65c06faaee10805531e9dade8 Mon Sep 17 00:00:00 2001
+From bc3b353cb2f26cf10aa5c5caebddf6d3d5b1e318 Mon Sep 17 00:00:00 2001
From: Julien Lepiller <julien@lepiller.eu>
-Date: Wed, 14 Dec 2016 14:14:59 +0100
+Date: Fri, 21 Sep 2018 22:31:29 +0200
Subject: [PATCH] fix camlp4 in another directory
---
- Makefile | 11 ++++++-----
- configure | 13 ++++++++++++-
- myocamlbuild.ml | 2 +-
- 3 files changed, 19 insertions(+), 7 deletions(-)
+ Makefile | 11 ++++++-----
+ configure | 13 ++++++++++++-
+ tests/Makefile | 2 +-
+ tests/camlp4-comments/Makefile | 2 +-
+ tests/camlp4-exclude-file/Makefile | 2 +-
+ tests/camlp4-exclude/Makefile | 2 +-
+ tests/camlp4-instrument-fast/Makefile | 2 +-
+ tests/camlp4-instrument/Makefile | 2 +-
+ tests/combine-expr/Makefile | 2 +-
+ tests/ppx-comments/Makefile | 2 +-
+ tests/ppx-exclude-file/Makefile | 2 +-
+ tests/ppx-exclude/Makefile | 2 +-
+ tests/ppx-instrument-fast/Makefile | 2 +-
+ tests/ppx-instrument/Makefile | 2 +-
+ tests/report/Makefile | 2 +-
+ 15 files changed, 31 insertions(+), 19 deletions(-)
diff --git a/Makefile b/Makefile
-index 4a8ce17..d94a6d5 100644
+index b0980ee..6697922 100644
--- a/Makefile
+++ b/Makefile
@@ -25,7 +25,7 @@ PATH_BUILD=$(PATH_BASE)/_build
@@ -19,12 +31,12 @@ index 4a8ce17..d94a6d5 100644
PATH_TESTS=$(PATH_BASE)/tests
-PATH_INSTALL=$(PATH_OCAML_PREFIX)/lib/ocaml/bisect
+PATH_INSTALL=$(PREFIX)/lib/ocaml/bisect
-
-
+
+
# DEFINITIONS
@@ -33,7 +33,8 @@ PATH_INSTALL=$(PATH_OCAML_PREFIX)/lib/ocaml/bisect
PROJECT_NAME=bisect
- OCAMLBUILD=$(PATH_OCAML_PREFIX)/bin/ocamlbuild
+ OCAMLBUILD=ocamlbuild
OCAMLBUILD_ENV=WARNINGS=$(WARNINGS) PATH_OCAML_PREFIX=$(PATH_OCAML_PREFIX)
-OCAMLBUILD_FLAGS=-classic-display -no-links
+CAMLP4_INCLUDE=$(shell test -z $(CAMLP4_LIBDIR) || echo "-cflags -I,$(CAMLP4_LIBDIR)")
@@ -33,22 +45,22 @@ index 4a8ce17..d94a6d5 100644
MODULES_MLPACK=$(PROJECT_NAME).mlpack
MODULES_MLPACK_PP=$(PROJECT_NAME)_pp.mlpack
@@ -80,11 +81,11 @@ veryclean: clean
- rm -f $(PATH_OCAMLDOC)/*.html $(PATH_OCAMLDOC)/*.css
-
+ rm -f $(PATH_OCAMLDOC)/*.html $(PATH_OCAMLDOC)/*.css
+
install: FORCE
- cp $(PATH_BUILD)/src/report/report.byte $(PATH_OCAML_PREFIX)/bin/bisect-report; \
+ cp $(PATH_BUILD)/src/report/report.byte $(PREFIX)/bin/bisect-report; \
- if [ "$(PPX)" = "TRUE" ]; then \
+ if [ "$(PPX)" = "TRUE" ]; then \
- cp $(PATH_BUILD)/src/syntax/bisect_ppx.byte $(PATH_OCAML_PREFIX)/bin; \
+ cp $(PATH_BUILD)/src/syntax/bisect_ppx.byte $(PREFIX)/bin; \
- fi; \
-- (test -x $(PATH_OCAML_PREFIX)/bin/ocamlopt && cp $(PATH_BUILD)/src/report/report.native $(PATH_OCAML_PREFIX)/bin/bisect-report.opt || true); \
-+ (test -x $(PATH_OCAML_PREFIX)/bin/ocamlopt && cp $(PATH_BUILD)/src/report/report.native $(PREFIX)/bin/bisect-report.opt || true); \
- if [ -x "$(PATH_OCAMLFIND)" ]; then \
- $(PATH_OCAMLFIND) query $(PROJECT_NAME) && $(PATH_OCAMLFIND) remove $(PROJECT_NAME) || true; \
- $(PATH_OCAMLFIND) install $(PROJECT_NAME) META -optional \
+ fi; \
+- (which ocamlopt && cp $(PATH_BUILD)/src/report/report.native $(PATH_OCAML_PREFIX)/bin/bisect-report.opt || true); \
++ (which ocamlopt && cp $(PATH_BUILD)/src/report/report.native $(PREFIX)/bin/bisect-report.opt || true); \
+ if [ -x "$(PATH_OCAMLFIND)" ]; then \
+ $(PATH_OCAMLFIND) query $(PROJECT_NAME) && $(PATH_OCAMLFIND) remove $(PROJECT_NAME) || true; \
+ $(PATH_OCAMLFIND) install $(PROJECT_NAME) META -optional \
diff --git a/configure b/configure
-index bb7ebf4..61a3095 100755
+index bb7ebf4..43ef46b 100755
--- a/configure
+++ b/configure
@@ -21,7 +21,9 @@
@@ -79,47 +91,193 @@ index bb7ebf4..61a3095 100755
ppx='TRUE';;
*)
- echo "usage: $0 [-ocaml-prefix <path>] [-ocamlfind <path>] [-no-native-dynlink] [-devel]";
-+ echo "usage: $0 [-prefix <path>] [-ocaml-prefix <path>] [-ocamlfind <path>] [-no-native-dynlink] [-devel]";
++ echo "usage: $0 [-prefix <path>] [-ocaml-prefix <path>] [-camlp4-prefix <path>] [-ocamlfind <path>] [-no-native-dynlink] [-devel]";
exit 1;;
esac
shift
@@ -57,6 +63,9 @@ if [ "$no_camlp4" = "TRUE" -a "$ppx" = "FALSE" ]; then
exit 1
fi
-
+
+# prefix default value
+test -z $prefix && prefix=$ocaml_prefix
+
# make options
make_quiet=`make -f - <<EOF
default: gnumake
-@@ -67,11 +76,13 @@ EOF`
+@@ -66,7 +75,9 @@ EOF`
+
# file creation
echo "# timestamp: `date`" > Makefile.config
++echo "PREFIX=$prefix" >> Makefile.config
echo "PATH_OCAML_PREFIX=$ocaml_prefix" >> Makefile.config
+echo "PATH_CAMLP4_PREFIX=$camlp4_prefix" >> Makefile.config
echo "PATH_OCAMLFIND=$ocamlfind" >> Makefile.config
echo "NATIVE_DYNLINK=$native_dynlink" >> Makefile.config
echo "WARNINGS=$devel" >> Makefile.config
- echo "NO_CAMLP4=$no_camlp4" >> Makefile.config
- echo "PPX=$ppx" >> Makefile.config
- echo "MAKE_QUIET=$make_quiet" >> Makefile.config
-+echo "PREFIX=$prefix" >> Makefile.config
- echo "" >> Makefile.config
- echo 'Makefile.config successfully created'
-diff --git a/myocamlbuild.ml b/myocamlbuild.ml
-index 8aa25fd..09a7d48 100644
---- a/myocamlbuild.ml
-+++ b/myocamlbuild.ml
-@@ -70,7 +70,7 @@ let () =
- | After_rules ->
- let camlp4of =
- try
-- let path_bin = Filename.concat (Sys.getenv "PATH_OCAML_PREFIX") "bin" in
-+ let path_bin = Filename.concat (Sys.getenv "PATH_CAMLP4_PREFIX") "bin" in
- Filename.concat path_bin "camlp4of"
- with _ -> "camlp4of" in
- flag ["ocaml"; "compile"; "pp_camlp4of"] (S[A"-pp"; A camlp4of]);
---
-2.7.4
+diff --git a/tests/Makefile b/tests/Makefile
+index 1aba27f..9642323 100644
+--- a/tests/Makefile
++++ b/tests/Makefile
+@@ -41,7 +41,7 @@ one: FORCE
+ else \
+ echo "Running tests for '$(NAME)'..." | tee -a _log; \
+ (cd $(NAME) && \
+- $(MAKE) PATH_OCAML_BIN=$(PATH_OCAML_PREFIX)/bin \
++ $(MAKE) PATH_OCAML_BIN=$(PATH_OCAML_PREFIX)/bin PATH_CAMLP4_PREFIX=$(PATH_CAMLP4_PREFIX) \
+ COMPILER=ocamlc EXECUTABLE=bytecode RUN=./ LIB_EXT=cma EXE_SUFFIX='' \
+ REPORT=../../_build/src/report/report.byte && \
+ cd ..) || echo '*** error' >> _log; \
+diff --git a/tests/camlp4-comments/Makefile b/tests/camlp4-comments/Makefile
+index 33fca72..a918118 100644
+--- a/tests/camlp4-comments/Makefile
++++ b/tests/camlp4-comments/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cmp
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -o $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -o $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cmp
+diff --git a/tests/camlp4-exclude-file/Makefile b/tests/camlp4-exclude-file/Makefile
+index ab13983..e2520fa 100644
+--- a/tests/camlp4-exclude-file/Makefile
++++ b/tests/camlp4-exclude-file/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cmp
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -exclude-file exclusions -o $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -exclude-file exclusions -o $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cmp
+diff --git a/tests/camlp4-exclude/Makefile b/tests/camlp4-exclude/Makefile
+index 18aada4..d71a7bc 100644
+--- a/tests/camlp4-exclude/Makefile
++++ b/tests/camlp4-exclude/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cmp
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -exclude 'f.*' -o $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -exclude 'f.*' -o $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cmp
+diff --git a/tests/camlp4-instrument-fast/Makefile b/tests/camlp4-instrument-fast/Makefile
+index f60767f..8506e38 100644
+--- a/tests/camlp4-instrument-fast/Makefile
++++ b/tests/camlp4-instrument-fast/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cmp
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo -mode fast $$file -o $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo -mode fast $$file -o $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cmp
+diff --git a/tests/camlp4-instrument/Makefile b/tests/camlp4-instrument/Makefile
+index 33fca72..a918118 100644
+--- a/tests/camlp4-instrument/Makefile
++++ b/tests/camlp4-instrument/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cmp
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -o $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/camlp4o$(EXE_SUFFIX) str.cma ../../_build/bisect_pp.cmo $$file -o $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cmp
+diff --git a/tests/combine-expr/Makefile b/tests/combine-expr/Makefile
+index 46ae9eb..e8e2af2 100644
+--- a/tests/combine-expr/Makefile
++++ b/tests/combine-expr/Makefile
+@@ -1,4 +1,4 @@
+-COMPILE_FLAGS=-I ../../_build -pp '$(PATH_OCAML_BIN)/camlp4o str.cma -I ../../_build bisect_pp.cmo' bisect.$(LIB_EXT) $(FLAGS)
++COMPILE_FLAGS=-I ../../_build -pp '$(PATH_CAMLP4_PREFIX)/bin/camlp4o str.cma -I ../../_build bisect_pp.cmo' bisect.$(LIB_EXT) $(FLAGS)
+
+ default: clean compile run report
+
+diff --git a/tests/ppx-comments/Makefile b/tests/ppx-comments/Makefile
+index f8c645a..667526f 100644
+--- a/tests/ppx-comments/Makefile
++++ b/tests/ppx-comments/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cm*
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte' -dsource $$file 2> $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte' -dsource $$file 2> $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cm*
+diff --git a/tests/ppx-exclude-file/Makefile b/tests/ppx-exclude-file/Makefile
+index a575a77..0dd1a20 100644
+--- a/tests/ppx-exclude-file/Makefile
++++ b/tests/ppx-exclude-file/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cm*
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte -exclude-file exclusions' -dsource $$file 2> $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte -exclude-file exclusions' -dsource $$file 2> $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cm*
+diff --git a/tests/ppx-exclude/Makefile b/tests/ppx-exclude/Makefile
+index a517af4..f502a42 100644
+--- a/tests/ppx-exclude/Makefile
++++ b/tests/ppx-exclude/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cm*
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/ocamlc -c -I ../../_build -ppx "../../_build/src/syntax/bisect_ppx.byte -exclude 'f.*'" -dsource $$file 2> $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/ocamlc -c -I ../../_build -ppx "../../_build/src/syntax/bisect_ppx.byte -exclude 'f.*'" -dsource $$file 2> $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cm*
+diff --git a/tests/ppx-instrument-fast/Makefile b/tests/ppx-instrument-fast/Makefile
+index da78bb6..1195988 100644
+--- a/tests/ppx-instrument-fast/Makefile
++++ b/tests/ppx-instrument-fast/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cm*
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte -mode fast' -dsource $$file 2> $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte -mode fast' -dsource $$file 2> $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cm*
+diff --git a/tests/ppx-instrument/Makefile b/tests/ppx-instrument/Makefile
+index f8c645a..667526f 100644
+--- a/tests/ppx-instrument/Makefile
++++ b/tests/ppx-instrument/Makefile
+@@ -2,7 +2,7 @@ default:
+ @rm -fr *.result *.cm*
+ @for file in *.ml; do \
+ echo " testing '$$file' ..."; \
+- $(PATH_OCAML_BIN)/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte' -dsource $$file 2> $$file.result; \
++ $(PATH_CAMLP4_PREFIX)/bin/ocamlc -c -I ../../_build -ppx '../../_build/src/syntax/bisect_ppx.byte' -dsource $$file 2> $$file.result; \
+ diff -q $$file.reference $$file.result || exit 1; \
+ done
+ @rm -fr *.result *.cm*
+diff --git a/tests/report/Makefile b/tests/report/Makefile
+index a7ffe44..a968bf9 100644
+--- a/tests/report/Makefile
++++ b/tests/report/Makefile
+@@ -1,4 +1,4 @@
+-COMPILE_FLAGS=-I ../../_build -pp '$(PATH_OCAML_BIN)/camlp4o str.cma -I ../../_build bisect_pp.cmo' bisect.$(LIB_EXT) $(FLAGS)
++COMPILE_FLAGS=-I ../../_build -pp '$(PATH_CAMLP4_PREFIX)/bin/camlp4o str.cma -I ../../_build bisect_pp.cmo' bisect.$(LIB_EXT) $(FLAGS)
+ XMLLINT=$(shell which xmllint)
+
+ default: clean compile run report
+--
+2.18.0
diff --git a/gnu/packages/patches/tomsfastmath-constness.patch b/gnu/packages/patches/tomsfastmath-constness.patch
new file mode 100644
index 0000000000..7c6ab5bbec
--- /dev/null
+++ b/gnu/packages/patches/tomsfastmath-constness.patch
@@ -0,0 +1,76 @@
+From dac089515901d6bf315cd15a6e744b8d2c02c1cb Mon Sep 17 00:00:00 2001
+From: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>
+Date: Sat, 31 Oct 2015 22:48:07 +0100
+Subject: [PATCH] tfm: make a few functions static
+
+clamav expects them to be static and it does not seem bad to do so.
+
+Signed-off-by: Sebastian Andrzej Siewior <sebastian@breakpoint.cc>
+---
+ src/bin/fp_read_radix.c | 2 +-
+ src/bin/fp_read_signed_bin.c | 2 +-
+ src/bin/fp_read_unsigned_bin.c | 2 +-
+ src/headers/tfm.h | 6 +++---
+ 4 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/src/bin/fp_read_radix.c b/src/bin/fp_read_radix.c
+index 0b5e826..431afa0 100644
+--- a/src/bin/fp_read_radix.c
++++ b/src/bin/fp_read_radix.c
+@@ -9,7 +9,7 @@
+ */
+ #include <tfm_private.h>
+
+-int fp_read_radix(fp_int *a, char *str, int radix)
++int fp_read_radix(fp_int *a, const char *str, int radix)
+ {
+ int y, neg;
+ char ch;
+diff --git a/src/bin/fp_read_signed_bin.c b/src/bin/fp_read_signed_bin.c
+index e2b8003..6467d19 100644
+--- a/src/bin/fp_read_signed_bin.c
++++ b/src/bin/fp_read_signed_bin.c
+@@ -9,7 +9,7 @@
+ */
+ #include <tfm_private.h>
+
+-void fp_read_signed_bin(fp_int *a, unsigned char *b, int c)
++void fp_read_signed_bin(fp_int *a, const unsigned char *b, int c)
+ {
+ /* read magnitude */
+ fp_read_unsigned_bin (a, b + 1, c - 1);
+diff --git a/src/bin/fp_read_unsigned_bin.c b/src/bin/fp_read_unsigned_bin.c
+index 3ee64c0..2ee89cb 100644
+--- a/src/bin/fp_read_unsigned_bin.c
++++ b/src/bin/fp_read_unsigned_bin.c
+@@ -9,7 +9,7 @@
+ */
+ #include <tfm_private.h>
+
+-void fp_read_unsigned_bin(fp_int *a, unsigned char *b, int c)
++void fp_read_unsigned_bin(fp_int *a, const unsigned char *b, int c)
+ {
+ /* zero the int */
+ fp_zero (a);
+diff --git a/src/headers/tfm.h b/src/headers/tfm.h
+index af87b56..f406388 100644
+--- a/src/headers/tfm.h
++++ b/src/headers/tfm.h
+@@ -467,14 +467,14 @@ int fp_prime_random_ex(fp_int *a, int t, int size, int flags, tfm_prime_callback
+ int fp_count_bits(fp_int *a);
+
+ int fp_unsigned_bin_size(fp_int *a);
+-void fp_read_unsigned_bin(fp_int *a, unsigned char *b, int c);
++void fp_read_unsigned_bin(fp_int *a, const unsigned char *b, int c);
+ void fp_to_unsigned_bin(fp_int *a, unsigned char *b);
+
+ int fp_signed_bin_size(fp_int *a);
+-void fp_read_signed_bin(fp_int *a, unsigned char *b, int c);
++void fp_read_signed_bin(fp_int *a, const unsigned char *b, int c);
+ void fp_to_signed_bin(fp_int *a, unsigned char *b);
+
+-int fp_read_radix(fp_int *a, char *str, int radix);
++int fp_read_radix(fp_int *a, const char *str, int radix);
+
+ int fp_radix_size(fp_int *a, int radix, int *size);
+ int fp_toradix(fp_int *a, char *str, int radix);
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index c2f73e3f5c..ba7ebcbdbe 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -2381,48 +2381,22 @@ logic-free templating system Mustache.")
(define-public python-joblib
(package
(name "python-joblib")
- (version "0.10.3")
+ (version "0.13.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "joblib" version))
(sha256
(base32
- "0787k919zlfmgymprz5bzv0v1df5bbirlf3awrghmjgvkrd9dci9"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Remove pre-compiled .pyc files from source.
- (for-each delete-file-recursively
- (find-files "." "__pycache__" #:directories? #t))
- (for-each delete-file (find-files "." "\\.pyc$"))
- #t))))
+ "0612nazad8dxmn3xghfrmjax6456l4xy6hn9cngs7vydi14ds7v5"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
- (add-before 'check 'disable-failing-tests
- (lambda _
- ;; This numpydoc tests fails for unknown reasons
- (delete-file "doc/sphinxext/numpydoc/tests/test_docscrape.py")
- ;; This numpydoc test depends on matplotlib, which is not a
- ;; required input.
- (delete-file "doc/sphinxext/numpydoc/tests/test_plot_directive.py")
- ;; These tests fail to execute sys.executable
- (substitute* "joblib/test/test_parallel.py"
- (("import nose" line)
- (string-append "from nose.plugins.skip import SkipTest\n" line))
- (("def test_nested_parallel_warnings" line)
- (string-append "@SkipTest\n" line))
- (("def test_parallel_with_interactively_defined_functions" line)
- (string-append "@SkipTest\n" line)))
- #t)))))
- ;; Provide nose to enable tests command
+ (replace 'check
+ (lambda _ (invoke "pytest" "-v" "joblib"))))))
(native-inputs
- `(("python-nose" ,python-nose)
- ("python-sphinx" ,python-sphinx)
- ("python-docutils" ,python-docutils)
- ("python-numpydoc" ,python-numpydoc)))
- (home-page "http://pythonhosted.org/joblib/")
+ `(("python-pytest" ,python-pytest)))
+ (home-page "https://joblib.readthedocs.io/")
(synopsis "Using Python functions as pipeline jobs")
(description
"Joblib is a set of tools to provide lightweight pipelining in Python.
@@ -9875,7 +9849,7 @@ and/or Xon/Xoff. The port is accessed in RAW mode.")
(define-public python-kivy
(package
(name "python-kivy")
- (version "1.10.0")
+ (version "1.10.1")
(source
(origin
(method url-fetch)
@@ -9883,7 +9857,7 @@ and/or Xon/Xoff. The port is accessed in RAW mode.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1394zh6kvf7k5d8vlzxcsfcailr3q59xwg9b1n7qaf25bvyq1h98"))))
+ "1zzxjdp78hfjjiklzr82l4zwibwcq4j6kgicspqs6iyyfn5yisbw"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; Tests require many optional packages
@@ -10126,26 +10100,41 @@ Python to manipulate OpenDocument 1.2 files.")
(define-public python-natsort
(package
(name "python-natsort")
- (version "5.0.2")
+ (version "5.4.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "natsort" version))
(sha256
(base32
- "0bh6j0l8iapjnsgg3bs6q075cnzjl6zw1vlgqyv3qrygm2cxypkn"))))
+ "0i732amg6yzkx4g4c9j09jmqq39q377x9cl2nbkm5hax2c2v0wxf"))))
(build-system python-build-system)
(arguments
- `(#:phases
+ `(#:modules ((guix build utils)
+ (guix build python-build-system)
+ (srfi srfi-1)
+ (srfi srfi-26)
+ (ice-9 ftw))
+ #:phases
(modify-phases %standard-phases
(add-before 'check 'set-cachedir
;; Tests require write access to $HOME by default
- (lambda _ (setenv "PYTHON_EGG_CACHE" "/tmp") #t)))))
+ (lambda _ (setenv "PYTHON_EGG_CACHE" "/tmp") #t))
+ (replace 'check
+ (lambda _
+ (let ((cwd (getcwd)))
+ (setenv "PYTHONPATH"
+ (string-append
+ cwd "/build/"
+ (find (cut string-prefix? "lib" <>)
+ (scandir (string-append cwd "/build")))
+ ":"
+ (getenv "PYTHONPATH")))
+ (invoke "pytest" "-v")))))))
(native-inputs
`(("python-hypothesis" ,python-hypothesis)
- ("python-pytest-cache" ,python-pytest-cache)
("python-pytest-cov" ,python-pytest-cov)
- ("python-pytest-flakes" ,python-pytest-flakes)
- ("python-pytest-pep8" ,python-pytest-pep8)))
+ ("python-pytest-mock" ,python-pytest-mock)
+ ("python-pytest" ,python-pytest)))
(propagated-inputs ; TODO: Add python-fastnumbers.
`(("python-pyicu" ,python-pyicu)))
(home-page "https://github.com/SethMMorton/natsort")
@@ -10167,8 +10156,6 @@ functionality in the command line.")
(package (inherit base)
(native-inputs
`(("python2-pathlib" ,python2-pathlib)
- ("python2-mock" ,python2-mock)
- ("python2-enum34" ,python2-enum34)
,@(package-native-inputs base))))))
(define-public python-glances
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index a5b661e34d..6144e236a7 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com>
+;;; Copyright © 2017, 2018 Paul Garlick <pgarlick@tourbillion-technology.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -18,10 +18,13 @@
(define-module (gnu packages simulation)
#:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
#:use-module (gnu packages base)
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages flex)
#:use-module (gnu packages gettext)
@@ -35,6 +38,8 @@
#:use-module (gnu packages mpi)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
#:use-module (gnu packages readline)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
@@ -42,7 +47,9 @@
#:use-module (gnu packages xorg)
#:use-module (guix download)
#:use-module (guix build utils)
+ #:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
+ #:use-module (guix build-system python)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
@@ -221,3 +228,484 @@ with gas/liquid interfaces. Large problems may be split into smaller, connected
problems for efficient solution on parallel systems.")
(license license:gpl3+)
(home-page "https://openfoam.org")))
+
+(define-public python-fenics-dijitso
+ (package
+ (name "python-fenics-dijitso")
+ (version "2018.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fenics-dijitso" version))
+ (sha256
+ (base32
+ "1qax2f52qsjbd1h5lk5i5shp448qlakxabjjybrfc1w823p0yql9"))))
+ (build-system python-build-system)
+ (inputs
+ `(("openmpi" ,openmpi)
+ ("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-pytest-cov" ,python-pytest-cov)))
+ (propagated-inputs
+ `(("python-mpi4py" ,python-mpi4py)))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'build 'mpi-setup
+ ,%openmpi-setup)
+ (replace 'check
+ (lambda _
+ (setenv "HOME" "/tmp")
+ (setenv "PYTHONPATH"
+ (string-append (getcwd) ":" (getenv "PYTHONPATH")))
+ (with-directory-excursion "test"
+ (invoke "./runtests.sh"))
+ #t)))))
+ (home-page "https://bitbucket.org/fenics-project/dijitso/")
+ (synopsis "Distributed just-in-time building of shared libraries")
+ (description
+ "Dijitso provides a core component of the @code{FEniCS} framework,
+namely the just-in-time compilation of C++ code that is generated from
+Python modules. It is called from within a C++ library, using ctypes
+to import the dynamic shared library directly.
+
+As long as the compiled code can provide a simple factory function to
+a class implementing a predefined C++ interface, there is no limit to
+the complexity of that interface. Parallel support depends on the
+@code{mpi4py} interface.")
+ (license license:lgpl3+)))
+
+(define-public python-fenics-ufl
+ (package
+ (name "python-fenics-ufl")
+ (version "2018.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fenics-ufl" version))
+ (sha256
+ (base32
+ "1fq8yc86s1s3c8c0b1rc2vf265q0hrkzg57100fg1nghcz0p4vla"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (setenv "PYTHONPATH"
+ (string-append (getcwd) ":" (getenv "PYTHONPATH")))
+ (with-directory-excursion "test"
+ (invoke "py.test"))
+ #t)))))
+ (home-page "https://bitbucket.org/fenics-project/ufl/")
+ (synopsis "Unified language for form-compilers")
+ (description "The Unified Form Language (UFL) is a domain specific
+language for declaration of finite element discretizations of
+variational forms. More precisely, it defines a flexible interface
+for choosing finite element spaces and defining expressions for weak
+forms in a notation close to mathematical notation.
+
+UFL is part of the FEniCS Project.")
+ (license license:lgpl3+)))
+
+(define-public python-fenics-fiat
+ (package
+ (name "python-fenics-fiat")
+ (version "2018.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fenics-fiat" version))
+ (sha256
+ (base32
+ "0fmjd93r6bwf6xs8csw86qzphrnr66xwv7f372w59gmq8mg6rljc"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-sympy" ,python-sympy)))
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (setenv "PYTHONPATH"
+ (string-append (getcwd) ":" (getenv "PYTHONPATH")))
+ (with-directory-excursion "test"
+ (invoke "py.test" "unit/"))
+ #t)))))
+ (home-page "https://bitbucket.org/fenics-project/fiat/")
+ (synopsis "Tabulation of finite element function spaces")
+ (description
+ "The FInite element Automatic Tabulator (FIAT) supports
+generation of arbitrary order instances of the Lagrange elements on
+lines, triangles, and tetrahedra. It is also capable of generating
+arbitrary order instances of Jacobi-type quadrature rules on the same
+element shapes. Further, H(div) and H(curl) conforming finite element
+spaces such as the families of Raviart-Thomas, Brezzi-Douglas-Marini
+and Nedelec are supported on triangles and tetrahedra. Upcoming
+versions will also support Hermite and nonconforming elements.
+
+FIAT is part of the FEniCS Project.")
+ (license license:lgpl3+)))
+
+(define-public python-fenics-ffc
+ (package
+ (name "python-fenics-ffc")
+ (version "2018.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fenics-ffc" version))
+ (sha256
+ (base32
+ "1b2ia5vlkw298x7rf0k2p3ihlpwkwgc98p3s6sbpds3hqmfrzdz9"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (propagated-inputs
+ `(("python-fenics-dijitso" ,python-fenics-dijitso)
+ ("python-fenics-fiat" ,python-fenics-fiat)
+ ("python-fenics-ufl" ,python-fenics-ufl)))
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (setenv "HOME" (getcwd))
+ (setenv "PYTHONPATH"
+ (string-append (getcwd) ":" (getenv "PYTHONPATH")))
+ (with-directory-excursion "test"
+ ;; FIXME: the tests in subdirectory
+ ;; 'unit/ufc/finite_element' require the ffc_factory
+ ;; extension module. This module, located in the 'libs'
+ ;; subdirectory, needs to be built and made accessible
+ ;; prior to running the tests.
+ (invoke "py.test" "unit/" "--ignore=unit/ufc/")
+ (with-directory-excursion "uflacs"
+ (invoke "py.test" "unit/")))
+ #t)))))
+ (home-page "https://bitbucket.org/fenics-project/ffc/")
+ (synopsis "Compiler for finite element variational forms")
+ (description "The FEniCS Form Compiler (FFC) is a compiler for
+finite element variational forms. From a high-level description of
+the form, it generates efficient low-level C++ code that can be used
+to assemble the corresponding discrete operator (tensor). In
+particular, a bilinear form may be assembled into a matrix and a
+linear form may be assembled into a vector. FFC may be used either
+from the command line (by invoking the @code{ffc} command) or as a
+Python module (@code{import ffc}).
+
+FFC is part of the FEniCS Project.")
+ ;; There are two files released with a public domain licence;
+ ;; ufc.h and ufc_geometry.h, in subdirectory 'ffc/backends/ufc'.
+ (license (list license:public-domain license:lgpl3+))))
+
+(define-public fenics-dolfin
+ (package
+ (name "fenics-dolfin")
+ (version "2018.1.0.post1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://bitbucket.org/fenics-project/dolfin/get/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "12zkk8j3xsg6l8p0ggwsl03084vlcivw4h99b7z9kndg7k89b3ya"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Make sure we don't use the bundled test framework.
+ (delete-file-recursively "test/unit/cpp/catch")
+ (substitute* "test/unit/cpp/main.cpp"
+ ;; Use standard search paths for 'catch' header file.
+ (("#include.*")
+ "#include <catch.hpp>\n"))
+ (substitute* "test/unit/cpp/CMakeLists.txt"
+ ;; Add extra include directories required by the unit tests.
+ (("(^target_link_libraries.*)" line)
+ (string-append line "\n"
+ "target_include_directories("
+ "unittests PRIVATE "
+ "${DOLFIN_SOURCE_DIR} "
+ "${DOLFIN_SOURCE_DIR}/dolfin "
+ "${DOLFIN_BINARY_DIR})\n"))
+ (("(^set\\(CATCH_INCLUDE_DIR ).*(/catch\\))" _ front back)
+ (string-append front
+ "$ENV{CATCH_DIR}"
+ "/include" back "\n")))
+ (substitute* "demo/CMakeLists.txt"
+ ;; Add extra include directories required by the demo tests.
+ (("(^#find_package.*)" line)
+ (string-append line "\n"
+ "include_directories("
+ "${DOLFIN_SOURCE_DIR} "
+ "${DOLFIN_SOURCE_DIR}/dolfin "
+ "${DOLFIN_BINARY_DIR})\n")))
+ #t))))
+ (build-system cmake-build-system)
+ (inputs
+ `(("blas" ,openblas)
+ ("boost" ,boost)
+ ("eigen" ,eigen)
+ ("hdf5" ,hdf5-parallel-openmpi)
+ ("lapack" ,lapack)
+ ("libxml2" ,libxml2)
+ ("openmpi" ,openmpi)
+ ("python" ,python-3)
+ ("scotch" ,pt-scotch32)
+ ("suitesparse" ,suitesparse)
+ ("sundials" ,sundials-openmpi)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("catch" ,catch-framework2)
+ ("pkg-config" ,pkg-config)))
+ (propagated-inputs
+ `(("ffc" ,python-fenics-ffc)
+ ("petsc" ,petsc-openmpi)
+ ("slepc" ,slepc-openmpi)))
+ (arguments
+ `(#:configure-flags
+ `("-DDOLFIN_ENABLE_DOCS:BOOL=OFF"
+ "-DDOLFIN_ENABLE_HDF5:BOOL=ON"
+ "-DDOLFIN_ENABLE_MPI:BOOL=ON"
+ "-DDOLFIN_ENABLE_PARMETIS:BOOL=OFF"
+ "-DDOLFIN_ENABLE_SCOTCH:BOOL=ON"
+ "-DDOLFIN_ENABLE_SUNDIALS:BOOL=ON"
+ "-DDOLFIN_ENABLE_TRILINOS:BOOL=OFF")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'patch-usr-bin-file 'mpi-setup
+ ,%openmpi-setup)
+ (add-after 'patch-source-shebangs 'set-paths
+ (lambda _
+ ;; Define paths to store locations.
+ (setenv "BLAS_DIR" (assoc-ref %build-inputs "blas"))
+ (setenv "CATCH_DIR" (assoc-ref %build-inputs "catch"))
+ (setenv "LAPACK_DIR" (assoc-ref %build-inputs "lapack"))
+ (setenv "PETSC_DIR" (assoc-ref %build-inputs "petsc"))
+ (setenv "SLEPC_DIR" (assoc-ref %build-inputs "slepc"))
+ (setenv "SCOTCH_DIR" (assoc-ref %build-inputs "scotch"))
+ (setenv "SUNDIALS_DIR" (assoc-ref %build-inputs "sundials"))
+ (setenv "UMFPACK_DIR" (assoc-ref %build-inputs "suitesparse"))
+ #t))
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; The Dolfin repository uses git-lfs, whereby web links are
+ ;; substituted for large files. Guix does not currently support
+ ;; git-lfs, so only the links are downloaded. The tests that
+ ;; require the absent meshes cannot run and are skipped.
+ ;;
+ ;; Two other serial tests fail and are skipped.
+ ;; i) demo_stokes-iterative_serial,
+ ;; The MPI_Comm_rank() function was called before MPI_INIT was
+ ;; invoked
+ ;; ii) demo_multimesh-stokes_serial:
+ ;; Warning: Found no facets matching domain for boundary
+ ;; condition.
+ ;;
+ ;; One mpi test fails and is skipped.
+ ;; i) demo_stokes-iterative_mpi:
+ ;; The MPI_Comm_rank() function was called before MPI_INIT was
+ ;; invoked
+ (call-with-output-file "CTestCustom.cmake"
+ (lambda (port)
+ (display
+ (string-append
+ "set(CTEST_CUSTOM_TESTS_IGNORE "
+ "demo_bcs_serial "
+ "demo_bcs_mpi "
+ "demo_eigenvalue_serial "
+ "demo_eigenvalue_mpi "
+ "demo_navier-stokes_serial "
+ "demo_navier-stokes_mpi "
+ "demo_stokes-taylor-hood_serial "
+ "demo_stokes-taylor-hood_mpi "
+ "demo_subdomains_serial "
+ "demo_advection-diffusion_serial "
+ "demo_advection-diffusion_mpi "
+ "demo_auto-adaptive-navier-stokes_serial "
+ "demo_contact-vi-snes_serial "
+ "demo_contact-vi-snes_mpi "
+ "demo_contact-vi-tao_serial "
+ "demo_contact-vi-tao_mpi "
+ "demo_curl-curl_serial "
+ "demo_curl-curl_mpi "
+ "demo_dg-advection-diffusion_serial "
+ "demo_dg-advection-diffusion_mpi "
+ "demo_elasticity_serial "
+ "demo_elasticity_mpi "
+ "demo_elastodynamics_serial "
+ "demo_elastodynamics_mpi "
+ "demo_lift-drag_serial "
+ "demo_lift-drag_mpi "
+ "demo_mesh-quality_serial "
+ "demo_mesh-quality_mpi "
+ "demo_multimesh-stokes_serial "
+ "demo_stokes-iterative_serial "
+ "demo_stokes-iterative_mpi "
+ ")\n") port)))
+ #t))
+ (replace 'check
+ (lambda _
+ (and (invoke "make" "unittests")
+ (invoke "make" "demos")
+ (invoke "ctest" "-R" "unittests")
+ (invoke "ctest" "-R" "demo" "-R" "serial")
+ (invoke "ctest" "-R" "demo" "-R" "mpi")))))))
+ (home-page "https://bitbucket.org/fenics-project/dolfin/")
+ (synopsis "Problem solving environment for differential equations")
+ (description
+ "DOLFIN is a computational framework for finding numerical
+solutions to problems described by differential equations. Numerical
+models in DOLFIN are constructed using general families of finite
+elements. Data structures are provided for discretizing the governing
+system on a computational mesh. A compact syntax, similar to
+mathematical notation, is made available for defining function spaces
+and expressing variational forms. Interfaces to specialized matrix
+solvers are provided for solving the resultant linear systems.
+
+@code{fenics-dolfin} is part of the FEniCS project. It is the C++
+user interface to the FEniCS core components and external libraries.")
+ ;; The source code for the DOLFIN C++ library is licensed under the
+ ;; GNU Lesser General Public License, version 3 or later, with the
+ ;; following exceptions:
+ ;;
+ ;; public-domain: dolfin/geometry/predicates.cpp
+ ;; dolfin/geometry/predicates.h
+ ;;
+ ;; zlib: dolfin/io/base64.cpp
+ ;; dolfin/io/base64.h
+ ;;
+ ;; expat: dolfin/io/pugiconfig.hpp
+ ;; dolfin/io/pugixml.cpp
+ ;; dolfin/io/pugixml.hpp
+ (license (list license:public-domain
+ license:zlib
+ license:expat
+ license:lgpl3+))))
+
+(define-public fenics
+ (package (inherit fenics-dolfin)
+ (name "fenics")
+ (build-system python-build-system)
+ (inputs
+ `(("pybind11" ,pybind11)
+ ("python-matplotlib" ,python-matplotlib)
+ ,@(alist-delete "python" (package-inputs fenics-dolfin))))
+ (native-inputs
+ `(("cmake" ,cmake)
+ ("ply" ,python-ply)
+ ("pytest" ,python-pytest)
+ ("python-decorator" ,python-decorator)
+ ("python-pkgconfig" ,python-pkgconfig)
+ ,@(package-native-inputs fenics-dolfin)))
+ (propagated-inputs
+ `(("dolfin" ,fenics-dolfin)
+ ("petsc4py" ,python-petsc4py)
+ ("slepc4py" ,python-slepc4py)))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'patch-source-shebangs 'set-paths
+ (lambda _
+ ;; Define paths to store locations.
+ (setenv "PYBIND11_DIR" (assoc-ref %build-inputs "pybind11"))
+ ;; Move to python sub-directory.
+ (chdir "python")
+ #t))
+ (add-after 'build 'mpi-setup
+ ,%openmpi-setup)
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; Exclude tests that require meshes supplied by git-lfs.
+ (substitute* "demo/test.py"
+ (("(.*stem !.*)" line)
+ (string-append
+ line "\n"
+ "excludeList = [\n"
+ "'multimesh-quadrature', \n"
+ "'multimesh-marking', \n"
+ "'mixed-poisson-sphere', \n"
+ "'mesh-quality', \n"
+ "'lift-drag', \n"
+ "'elastodynamics', \n"
+ "'dg-advection-diffusion', \n"
+ "'contact-vi-tao', \n"
+ "'contact-vi-snes', \n"
+ "'collision-detection', \n"
+ "'buckling-tao', \n"
+ "'auto-adaptive-navier-stokes', \n"
+ "'advection-diffusion', \n"
+ "'subdomains', \n"
+ "'stokes-taylor-hood', \n"
+ "'stokes-mini', \n"
+ "'navier-stokes', \n"
+ "'eigenvalue']\n"
+ "demos = ["
+ "d for d in demos if d[0].stem not in "
+ "excludeList]\n")))
+ (setenv "HOME" (getcwd))
+ (setenv "PYTHONPATH"
+ (string-append
+ (getcwd) "/build/lib.linux-x86_64-"
+ ,(version-major+minor (package-version python)) ":"
+ (getenv "PYTHONPATH")))
+ ;; Restrict OpenBLAS to MPI-only in preference to MPI+OpenMP.
+ (setenv "OPENBLAS_NUM_THREADS" "1")
+ #t))
+ (replace 'check
+ (lambda _
+ (with-directory-excursion "test"
+ ;; Note: The test test_snes_set_from_options() in the file
+ ;; unit/nls/test_PETScSNES_solver.py fails and is ignored.
+ (and (invoke "py.test" "unit" "--ignore"
+ "unit/nls/test_PETScSNES_solver.py")
+ (invoke "mpirun" "-np" "3" "python" "-B" "-m"
+ "pytest" "unit" "--ignore"
+ "unit/nls/test_PETScSNES_solver.py")))
+ (with-directory-excursion "demo"
+ ;; Check demos.
+ (invoke "python" "generate-demo-files.py")
+ (and (invoke "python" "-m" "pytest" "-v" "test.py")
+ (invoke "python" "-m" "pytest" "-v" "test.py"
+ "--mpiexec=mpiexec" "--num-proc=3")))
+ #t))
+ (add-after 'install 'install-demo-files
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((demos (string-append
+ (assoc-ref outputs "out")
+ "/share/python-dolfin/demo")))
+ (mkdir-p demos)
+ (with-directory-excursion "demo"
+ (for-each (lambda (file)
+ (let* ((dir (dirname file))
+ (tgt-dir (string-append demos "/" dir)))
+ (unless (equal? "." dir)
+ (mkdir-p tgt-dir)
+ (install-file file tgt-dir))))
+ (find-files "." ".*\\.(py|gz|xdmf)$"))))
+ #t)))))
+ (home-page "https://fenicsproject.org/")
+ (synopsis "High-level environment for solving differential equations")
+ (description
+ "@code{fenics} is a computing platform for solving general classes of
+problems that involve differential equations. @code{fenics} facilitates
+access to efficient methods for dealing with ordinary differential
+equations (ODEs) and partial differential equations (PDEs). Systems of
+equations such as these are commonly encountered in areas of engineering,
+mathematics and the physical sciences. It is particularly well-suited to
+problems that can be solved using the Finite Element Method (FEM).
+
+@code{fenics} is the top level of the set of packages that are developed
+within the FEniCS project. It provides the python user interface to the
+FEniCS core components and external libraries.")
+ (license license:lgpl3+)))
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 57fb99ef28..66f57ac879 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2300,14 +2300,14 @@ collation, and NAMESPACE files.")
(define-public r-openssl
(package
(name "r-openssl")
- (version "1.0.2")
+ (version "1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
- "1djfpnphkcxx8idk5rjfzg8r8dnqsgc0shh2pw8lns5hap2wc5rc"))))
+ "0ldxgcr33lawwr8wp14kdk2678gpkvqkzv6g333bhck1hn6qspzv"))))
(build-system r-build-system)
(inputs
`(("libressl" ,libressl)))
@@ -4706,14 +4706,14 @@ models, generalized linear models and model-based clustering.")
(define-public r-mclust
(package
(name "r-mclust")
- (version "5.4.1")
+ (version "5.4.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "mclust" version))
(sha256
(base32
- "1vcl4nl8by2vj2k9k84imy5m850khkgd8q02a8ica1h8vz9ijgn4"))))
+ "09152swfpa3fzhmrq5cwb5kxgvrxvigv1m4v6rhcibrdhfd1x8x4"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 04d28044dd..e0ad6248a5 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -2279,3 +2279,55 @@ used to keep a folder in sync between computers.")
;; The web app is released under the AGPLv3+.
(license (list license:gpl3+
license:agpl3+))))
+
+(define-public git-when-merged
+ ;; Use an unreleased version to get a PY3 compatibility fix.
+ (let ((commit "ab6af7865a0ba55ba364a6c507e0be6f84f31c6d"))
+ (package
+ (name "git-when-merged")
+ (version (string-append "1.2.0-" (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mhagger/git-when-merged/")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0iyk2psf97bc9h43m89p3xjmm79fsx99i7px29g4lcnmdy5kmz0p"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ; there are no tests
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (install-file "bin/git-when-merged"
+ (string-append (assoc-ref outputs "out")
+ "/bin"))
+ #t))
+ (add-before 'install 'patch-git
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((git (string-append (assoc-ref inputs "git")
+ "/bin/git")))
+ (substitute* "bin/git-when-merged"
+ (("'git'") (string-append "'" git "'")))
+ #t)))
+ (add-after 'install 'wrap-script
+ (lambda* (#:key outputs #:allow-other-keys)
+ (wrap-program (string-append (assoc-ref outputs "out")
+ "/bin/git-when-merged")
+ `("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))))
+ #t)))))
+ (inputs
+ `(("git" ,git)
+ ("python" ,python-wrapper)))
+ (home-page "https://github.com/mhagger/git-when-merged")
+ (synopsis "Determine when a commit was merged into a Git branch")
+ (description "This Git extension defines a subcommand,
+@code{when-merged}, whose core operation is to find the merge that brought a
+given commit into the specified ref(s). It has various options that control
+how information about the merge is displayed.")
+ (license license:gpl2+))))
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index db1654afac..c8437bdf4e 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -5645,14 +5645,14 @@ application framework for R, making it easy to create attractive dashboards.")
(define-public r-shinyfiles
(package
(name "r-shinyfiles")
- (version "0.7.1")
+ (version "0.7.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "shinyFiles" version))
(sha256
(base32
- "1cbg09l7w2zbgxb4qjm9p873p0lzrihlzsk5xxi3cpxdckn6zsrm"))))
+ "0dlcjrw96x72grg6j915070x8x98l7629pn86gf148iknflm7gd5"))))
(properties `((upstream-name . "shinyFiles")))
(build-system r-build-system)
(propagated-inputs