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-rw-r--r--gnu/packages/statistics.scm75
1 files changed, 70 insertions, 5 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 3d0faf7572..7b3483206f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -4,6 +4,7 @@
;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
+;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -98,7 +99,7 @@ be output in text, PostScript, PDF or HTML.")
(define-public r
(package
(name "r")
- (version "3.2.5")
+ (version "3.3.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
@@ -106,7 +107,7 @@ be output in text, PostScript, PDF or HTML.")
version ".tar.gz"))
(sha256
(base32
- "1dc0iybjk9kr1nghz3fpir6mb9hb9rnrz9bgh00w5pg5vir5cx30"))))
+ "1r0i0cqs3p0vrpiwq0zg5kbrmja9rmaijyzf9f23v6d5n5ab2mlj"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
@@ -120,10 +121,14 @@ be output in text, PostScript, PDF or HTML.")
;; Set default pager to "cat", because otherwise it is "false",
;; making "help()" print nothing at all.
(lambda _ (setenv "PAGER" "cat") #t))
- (add-before
- 'check 'set-timezone
+ (add-before 'check 'set-timezone
;; Some tests require the timezone to be set.
- (lambda _ (setenv "TZ" "UTC") #t))
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "TZ" "UTC")
+ (setenv "TZDIR"
+ (string-append (assoc-ref inputs "tzdata")
+ "/share/zoneinfo"))
+ #t))
(add-after 'build 'make-info
(lambda _ (zero? (system* "make" "info"))))
(add-after 'build 'install-info
@@ -160,6 +165,8 @@ be output in text, PostScript, PDF or HTML.")
("xz" ,xz)))
(inputs
`(("cairo" ,cairo)
+ ("curl" ,curl)
+ ("tzdata" ,tzdata)
("gfortran" ,gfortran)
("icu4c" ,icu4c)
("libjpeg" ,libjpeg)
@@ -252,6 +259,24 @@ purposes for which more comprehensive (and widely tested) libraries such as
OpenSSL should be used.")
(license license:gpl2+)))
+(define-public r-estimability
+ (package
+ (name "r-estimability")
+ (version "1.1-1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "estimability" version))
+ (sha256
+ (base32
+ "049adh8i0ad0m0qln2ylqdxcs5v2q9zfignn2a50r5f93ip2ay6w"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/estimability")
+ (synopsis "Tools for assessing estimability of linear predictions")
+ (description "Provides tools for determining estimability of linear
+functions of regression coefficients, and 'epredict' methods that handle
+non-estimable cases correctly.")
+ (license license:gpl2+)))
+
(define-public r-gtable
(package
(name "r-gtable")
@@ -1239,6 +1264,27 @@ inference for statistical models.")
`(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs stats))))))
+(define-public r-coda
+ (package
+ (name "r-coda")
+ (version "0.18-1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "coda" version))
+ (sha256
+ (base32
+ "03sc780734zj2kqcm8lkyvf76fql0jbfhkblpn8l58zmb6cqi958"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lattice" ,r-lattice)))
+ (home-page "http://cran.r-project.org/web/packages/coda")
+ (synopsis "This is a package for Output Analysis and Diagnostics for MCMC")
+ (description "This package provides functions for summarizing and plotting
+the output from Markov Chain Monte Carlo (MCMC) simulations, as well as
+diagnostic tests of convergence to the equilibrium distribution of the Markov
+chain.")
+ (license license:gpl2+)))
+
(define-public r-xml2
(package
(name "r-xml2")
@@ -2393,6 +2439,25 @@ things. RSP is ideal for self-contained scientific reports and R package
vignettes.")
(license license:lgpl2.1+)))
+(define-public r-mvtnorm
+ (package
+ (name "r-mvtnorm")
+ (version "1.0-5")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "mvtnorm" version))
+ (sha256
+ (base32
+ "1pc1mi2h063gh4a40009xk5j6pf5bm4274i5kycln38dixsry3yh"))))
+ (build-system r-build-system)
+ (inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "http://mvtnorm.R-forge.R-project.org")
+ (synopsis "Package for multivariate normal and t-distributions")
+ (description "This package can compute multivariate normal and
+t-probabilities, quantiles, random deviates and densities.")
+ (license license:gpl2)))
+
(define-public r-matrixstats
(package
(name "r-matrixstats")