diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 88 |
1 files changed, 47 insertions, 41 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index f2a6971826..bfa7e05f9d 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -110,7 +110,7 @@ be output in text, PostScript, PDF or HTML.") (define-public r-minimal (package (name "r-minimal") - (version "3.4.2") + (version "3.4.3") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -118,7 +118,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 - "0r0cv2kc3x5z9xycpnxx6fbvv22psw2m342jhpslbxkc8g1307lp")))) + "09pl0w01fr09bsrwd7nz2r5psysj0z93w4chz3hm2havvqqvhg3s")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -359,14 +359,14 @@ k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.") (define-public r-cluster (package (name "r-cluster") - (version "2.0.5") + (version "2.0.6") (source (origin (method url-fetch) (uri (cran-uri "cluster" version)) (sha256 (base32 - "1bkvqmv8h2c423q9ag2afb6s9j2vcdlxsf559zzbimraphrr2c2b")))) + "1z4gbz7chxxi4ly6c0yjlikwgf8aa8dlg05cn5cd6pjr21zvh97l")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) @@ -464,14 +464,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.2-11") + (version "1.2-12") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "1yvd6fx3n99j4gvzrng43ji38pr5h8y03kijccgjdalym2hcp36g")))) + "1wm45hg4x5ay15y03k6rmgkd1n9r01da72mszk24vafwd7pimr8n")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -937,14 +937,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.1.5") + (version "1.1.6") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "1wh20is24lmzhcd9487ckv7r19009fyz4is3ianp3ky69vy8a7k5")))) + "122im5m8x9bqpahc0hbxmvdq6hnsmgnxwwyjpvbihyv2jq5kd44m")))) (build-system r-build-system) (inputs `(("icu4c" ,icu4c))) (native-inputs `(("pkg-config" ,pkg-config))) @@ -2095,26 +2095,27 @@ or source files in a key-value fashion.") (define-public r-batchjobs (package (name "r-batchjobs") - (version "1.6") + (version "1.7") (source (origin (method url-fetch) (uri (cran-uri "BatchJobs" version)) (sha256 (base32 - "1kb99024jih5bycc226bl4jyvbbl1sg72q3m2wnlshl7s8p6vva0")))) + "035658marnw57p4f38g99rwmvmb6hpbq0fhlxp3qbw22zfnnkvs9")))) (properties `((upstream-name . "BatchJobs"))) (build-system r-build-system) (propagated-inputs - `(("r-bbmisc" ,r-bbmisc) + `(("r-backports" ,r-backports) + ("r-bbmisc" ,r-bbmisc) ("r-brew" ,r-brew) ("r-checkmate" ,r-checkmate) + ("r-data-table" ,r-data-table) ("r-dbi" ,r-dbi) ("r-digest" ,r-digest) - ("r-fail" ,r-fail) ("r-rsqlite" ,r-rsqlite) ("r-sendmailr" ,r-sendmailr) - ("r-stringr" ,r-stringr))) + ("r-stringi" ,r-stringi))) (home-page "https://github.com/tudo-r/BatchJobs") (synopsis "Batch computing with R") (description @@ -2221,14 +2222,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "0.9.8") + (version "0.9.9") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "0wm7pkm5yfsxmpyr8n0pvj1398wqg5gzp5clqrg5nb2mflxv2nlc")))) + "1ir7ggs0rxgn83h40r6jg9dzhb7hbcwhkcj5nsdzj7jz61sfgv77")))) (build-system r-build-system) (inputs `(("libressl" ,libressl))) @@ -2320,13 +2321,13 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "1.13.3") + (version "1.13.4") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "146wb09cmfh10vhn1ps2nmzx104zldb3nj9qv2ic0gbcikbbryp6")))) + "1az1qf50vyhm4w6k2a6wqw3pqc8jv2iqzdhs36cg079hx9swm0mb")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -2367,15 +2368,18 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "0.3") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "127znf522r5mn3k6frhdd7pqh063bs3l85gn9h7cx50hpjf2as4k")))) + "07sh75flp15lx2b00s3nxh04xr9gk4qhlbh125qx25isf71zw6zl")))) (build-system r-build-system) + (propagated-inputs + `(("r-rlang" ,r-rlang) + ("r-pkgconfig" ,r-pkgconfig))) (home-page "https://github.com/rstats-db/hms") (synopsis "Pretty time of day") (description @@ -2563,24 +2567,25 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "1.6") + (version "1.8") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 (base32 - "0p8ph5z5pifk1nxc1bppkfs1ir5gjc6ap9n64b4255m2fdaqfrc7")))) + "0q1y1qx87xp6vf9h7mfl77rqhmd01xl53l9ap9qj99bfvpabb572")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs - `(("r-catools" ,r-catools) + `(("r-base64enc" ,r-base64enc) ("r-evaluate" ,r-evaluate) ("r-htmltools" ,r-htmltools) ("r-jsonlite" ,r-jsonlite) - ("r-base64enc" ,r-base64enc) ("r-knitr" ,r-knitr) + ("r-mime" ,r-mime) ("r-rprojroot" ,r-rprojroot) + ("r-stringr" ,r-stringr) ("r-yaml" ,r-yaml) ("ghc-pandoc" ,ghc-pandoc))) (home-page "http://rmarkdown.rstudio.com") @@ -3273,20 +3278,19 @@ message passing.") (define-public r-bigmemory (package (name "r-bigmemory") - (version "4.5.19") + (version "4.5.31") (source (origin (method url-fetch) (uri (cran-uri "bigmemory" version)) (sha256 (base32 - "191gbzca557kpk7mdsg716vfyqpr7j5din6qb8hin4g1nkzzwmg6")))) + "0wv0p746zz5a6r1yd0fgpj2kfcyzk2f4rxqz92p6lp9jzakv4lfs")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) ("r-rcpp" ,r-rcpp) - ("r-bigmemory-sri" ,r-bigmemory-sri) - ("r-r-utils" ,r-r-utils))) + ("r-bigmemory-sri" ,r-bigmemory-sri))) (home-page "http://www.bigmemory.org") (synopsis "Manage large matrices with shared memory or memory-mapped files") (description "This package provides methods to create, store, access, and @@ -4389,19 +4393,20 @@ Farebrother's algorithm or Liu et al.'s algorithm.") (define-public r-cowplot (package (name "r-cowplot") - (version "0.8.0") + (version "0.9.1") (source (origin (method url-fetch) (uri (cran-uri "cowplot" version)) (sha256 (base32 - "03bh0r6ynr95gk4lc8asfi3kpmskm59vfzwn417pdziha3igs5x6")))) + "0iq0wsi7467cj8hqml06whk3xsiv89x8dvm9ynwp411pzzbdjgwm")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-gtable" ,r-gtable) - ("r-plyr" ,r-plyr))) + ("r-plyr" ,r-plyr) + ("r-scales" ,r-scales))) (home-page "https://github.com/wilkelab/cowplot") (synopsis "Streamlined plot theme and plot annotations for ggplot2") (description @@ -4571,14 +4576,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "5.3") + (version "5.4") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "0h5syvpg3azrz5d10z2afilaa27jb4azi38idzlv05mfcs16s6rb")))) + "1i3v1q8qq0al3ifvjhcvxfsg68cx9mq8jz67jwmiqai78mw0aqvk")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -4913,14 +4918,14 @@ based on an interface to Fortran implementations by M. J. D. Powell.") (define-public r-rcppeigen (package (name "r-rcppeigen") - (version "0.3.3.3.0") + (version "0.3.3.3.1") (source (origin (method url-fetch) (uri (cran-uri "RcppEigen" version)) (sha256 (base32 - "0zz9v0f8nnlvhhqv91lkyfblvjnmav84l89mr6vmbqjc2hzqd3n8")))) + "093g2wmqyk86693l0lzh2va8119w3k7rvw5q24p842jdfv5x5z8l")))) (properties `((upstream-name . "RcppEigen"))) (build-system r-build-system) (propagated-inputs @@ -5091,14 +5096,14 @@ bootstrap test for generalized linear mixed models.") (define-public r-car (package (name "r-car") - (version "2.1-5") + (version "2.1-6") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 (base32 - "1bm0ks9ga60z3izgq0d4kvirr9v4yf1820d1wznkihnbb55bc3m6")))) + "14l4d9j87xnb0bz2wgqqbxnlnbcdfb5vx2fw6kdxj91kyrk6lhnj")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -5145,18 +5150,19 @@ classification and regression models.") (define-public r-rcppprogress (package (name "r-rcppprogress") - (version "0.3") + (version "0.4") (source (origin (method url-fetch) (uri (cran-uri "RcppProgress" version)) (sha256 (base32 - "0796g11w7iv3ix1wfm3fh09qq7jki4r4cp1mjagq77igri3xrr9x")))) + "09ayw6d69i0lplmaj5md25p5hn1nmiyp6a4sh60v93nrrs1cq7iv")))) (properties `((upstream-name . "RcppProgress"))) (build-system r-build-system) (propagated-inputs - `(("r-rcpp" ,r-rcpp))) + `(("r-devtools" ,r-devtools) + ("r-rcpp" ,r-rcpp))) (home-page "https://github.com/kforner/rcpp_progress") (synopsis "Interruptible progress bar for C++ in R packages") (description @@ -5211,14 +5217,14 @@ first and second order derivatives.") (define-public r-sn (package (name "r-sn") - (version "1.5-0") + (version "1.5-1") (source (origin (method url-fetch) (uri (cran-uri "sn" version)) (sha256 (base32 - "0fh7xjsfd2x8d9lbnss7raldh24b72b3pvcv7zqa1qprzg7zfr01")))) + "0l7qlah6dwkp8jswnr2mn3phlm15naba5zkmv0g5pcqy5ix0gz7w")))) (build-system r-build-system) (propagated-inputs `(("r-mnormt" ,r-mnormt) |