diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 113 |
1 files changed, 60 insertions, 53 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index e2a673a4e6..d9a20cd818 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -339,14 +339,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-50") + (version "7.3-51") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "16hasv9k4n773jsyzvh8s3gbga49hwdj8n5hxij6zqisy4i0kxq6")))) + "0yp5ssfm9mahrp30y1hkqgjg70mzs6w065ba8h7j5ky1z6msdsdy")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -532,14 +532,14 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-24") + (version "1.8-25") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 (base32 - "15b76m1f0hz8dbmj9shqvslihdx5b7c48vck9grj5xs1z2y45r9c")))) + "1y2rq6v45pr2wcxihhgmingcdvcsilim2cvskrlb7k2n00qg6v2q")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -725,13 +725,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.16") + (version "0.6.18") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "1lhs59pdjhpb63jyy98pi1shk9shw044k6vl0mvw0f40v08326ar")))) + (base32 "0k3iv0r8wy8w7zchmgrnrqv3bc149075j4817kf0q521vi4f6vbj")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -1059,13 +1059,13 @@ legends.") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.0.0") + (version "3.1.0") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0kb977hizsvk3b1k3zr717q78bpmbabhl8cj9a3w717nkq1zas67")))) + (base32 "1msy36r21nlmnpyaw2m9k0ykmnd19b9il01b65w457pfw75prrs9")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1249,16 +1249,14 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.11") + (version "0.12") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "1k8vcd4vsgg0hf7kdz8rlqp1dx4ygvg35aj4n3ay50kdnpzhaj5h")))) + "11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g")))) (build-system r-build-system) - (propagated-inputs - `(("r-stringr" ,r-stringr))) (home-page "https://github.com/hadley/evaluate") (synopsis "Parsing and evaluation tools for R") (description @@ -1310,13 +1308,13 @@ supported via Andre Simon's highlight package.") (define-public r-mime (package (name "r-mime") - (version "0.5") + (version "0.6") (source (origin (method url-fetch) (uri (cran-uri "mime" version)) (sha256 (base32 - "0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw")))) + "00f4gw4sg1kn03s67gficxgb7a7fb6pwhlvrxrml05q1mc2vcxa7")))) (build-system r-build-system) (home-page "https://github.com/yihui/mime") (synopsis "R package to map filenames to MIME types") @@ -1423,13 +1421,13 @@ from knitr Rmarkdown.") (define-public r-microbenchmark (package (name "r-microbenchmark") - (version "1.4-4") + (version "1.4-6") (source (origin (method url-fetch) (uri (cran-uri "microbenchmark" version)) (sha256 (base32 - "0fv2w2vsiz18imf4115nd9chhmf275w2mb49pn7pkxi6z3bamc9c")))) + "1sn1fxgzakm5iqbgc35g3k4yi0iqrkmwz33cvdrphrzh1lxnmi3s")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/microbenchmark/") (synopsis "Accurate timing functions for R") @@ -1526,13 +1524,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "2.0.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "155l53kb69jga5d8c5nvdwqlvlgfmk4vzyyl4d0108j53jnlgh1v")))) + "1cafy5xsjx6m08s45456mjsal7mfxzwpbrds0p4z3gwam948gpzy")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -1553,13 +1551,13 @@ flexible and easy to set up.") (define-public r-r6 (package (name "r-r6") - (version "2.2.2") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "R6" version)) (sha256 (base32 - "13xfdr19ca7ymisidsanm6w7hsk3qmy5l8c0mlz3nk48f7s5cxq8")))) + "1jgshp0x8a65rwyvk31slnfp7l153dk5826y2rxcd5lpclby3d85")))) (build-system r-build-system) (home-page "https://github.com/wch/R6/") (synopsis "Classes with reference semantics in R") @@ -1575,13 +1573,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.2.2") + (version "0.3.0.1") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0cqd894wzi53rs53prg0j7i75h0yzgi0127fzjqbdbhczwh984f9")))) + "0j7kp6h25wbkvpzr7dpc0zgdpjiwsjjlgprj3mv7bgfalfq1si99")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1617,13 +1615,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "0.7.6") + (version "0.7.7") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0c43h13s5mr0fklikbbm89gs6z5n66rkjzdv6w3w6kl5af5wr2fl")))) + "196lwck3i3m25jnn1f1nrda9svnjqqi89s0is79gbrphamddnlq5")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -1767,13 +1765,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.11.4") + (version "1.11.8") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "1mc1drqj5i5ar2za3nkh5j70y37s7z7xwqri2r2b72zkqggg3k7x")))) + "1nb6wngrk1a30m984524gf26fa1nwgyf4y4an94dibcwb5jp8hnw")))) (build-system r-build-system) (home-page "https://github.com/Rdatatable/data.table/wiki") (synopsis "Enhanced version of data.frame R object") @@ -1913,13 +1911,13 @@ inference for statistical models.") (define-public r-coda (package (name "r-coda") - (version "0.19-1") + (version "0.19-2") (source (origin (method url-fetch) (uri (cran-uri "coda" version)) (sha256 (base32 - "14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl")))) + "03fs3sdrrym3is92dgpa6ydk3m63gaihwy7bva4k0wm2hxm7x2k7")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -2212,14 +2210,14 @@ other packages.") (define-public r-commonmark (package (name "r-commonmark") - (version "1.5") + (version "1.6") (source (origin (method url-fetch) (uri (cran-uri "commonmark" version)) (sha256 (base32 - "1jwx5rgm0ypd9a3v4jd9za4a644rdzhk1n4dvmgkj9hdpwsida3z")))) + "1xymqncf8byqxzpx64zlp6vbx7gry572jkr2ax0zlavr8bli861x")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/commonmark") (synopsis "CommonMark and Github Markdown Rendering in R") @@ -2350,13 +2348,13 @@ pure C implementation of the Git core methods.") (define-public r-rstudioapi (package (name "r-rstudioapi") - (version "0.7") + (version "0.8") (source (origin (method url-fetch) (uri (cran-uri "rstudioapi" version)) (sha256 (base32 - "133s75q2hr6jg28m1wvs96qrbc9c4vw87migwhkjqb88xxvbqhd5")))) + "0d6r0in13k0rcyr6asanwy0a9dv4lizq6l2w913rr222pq6vrrck")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/rstudioapi") (synopsis "Safely access the RStudio API") @@ -2368,22 +2366,29 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "1.13.6") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "1d9n49djydywfyp9w3njgxs5lag4ac7719wmxy1lkgcmn3l9sx5r")))) + "1nyspqicn9zd1rgq3k07b3179i8w5ys6jbd65g9q8qczrb7z3x8f")))) (build-system r-build-system) (propagated-inputs - `(("r-digest" ,r-digest) + `(("r-callr" ,r-callr) + ("r-cli" ,r-cli) + ("r-digest" ,r-digest) ("r-git2r" ,r-git2r) ("r-httr" ,r-httr) ("r-jsonlite" ,r-jsonlite) ("r-memoise" ,r-memoise) + ("r-pkgbuild" ,r-pkgbuild) + ("r-pkgload" ,r-pkgload) + ("r-rcmdcheck" ,r-rcmdcheck) + ("r-remotes" ,r-remotes) ("r-rstudioapi" ,r-rstudioapi) - ("r-whisker" ,r-whisker) + ("r-sessioninfo" ,r-sessioninfo) + ("r-usethis" ,r-usethis) ("r-withr" ,r-withr))) (home-page "https://github.com/hadley/devtools") (synopsis "Tools to make developing R packages easier") @@ -2459,13 +2464,13 @@ disk (or a connection).") (define-public r-plotrix (package (name "r-plotrix") - (version "3.7-3") + (version "3.7-4") (source (origin (method url-fetch) (uri (cran-uri "plotrix" version)) (sha256 (base32 - "18702y1gbyis56mh219z5ww0nrkh6qx7bgqv3khyn80g2giwk7cf")))) + "1hs0zwaqs34559girinvysjfbvznyn8znp9cwvkqx6k2cqvcjinj")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/plotrix") (synopsis "Various plotting functions") @@ -2942,13 +2947,13 @@ multiple breakpoints are allowed.") (define-public r-snow (package (name "r-snow") - (version "0.4-2") + (version "0.4-3") (source (origin (method url-fetch) (uri (cran-uri "snow" version)) (sha256 (base32 - "1mxbrkpnmq32x4wd0194d541661yvfrrjlr3lsf7qq53ms3h21zf")))) + "1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/snow") (synopsis "Support for simple parallel computing in R") @@ -3034,14 +3039,14 @@ parallel.") (define-public r-doparallel (package (name "r-doparallel") - (version "1.0.11") + (version "1.0.14") (source (origin (method url-fetch) (uri (cran-uri "doParallel" version)) (sha256 (base32 - "0sppgxk3d8mfsrb3cjdyn0mv0s4i7pcy8g8c3cjzbr6k8vmx5jsc")))) + "01qjs4iw9f1kgymcypj0m2s4pvgqhxaycpli0fb8lq3dc0vpzfyb")))) (properties `((upstream-name . "doParallel"))) (build-system r-build-system) (propagated-inputs @@ -3634,14 +3639,14 @@ the 'lite' version of the more complete @code{viridis} package.") (define-public r-tidyselect (package (name "r-tidyselect") - (version "0.2.4") + (version "0.2.5") (source (origin (method url-fetch) (uri (cran-uri "tidyselect" version)) (sha256 (base32 - "1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw")))) + "0x3cp36byhfjajikr1lwffjm85ayw3bcs7d7kb0cydgs61ifiqjw")))) (build-system r-build-system) (propagated-inputs `(("r-glue" ,r-glue) @@ -4231,13 +4236,13 @@ mechanism.") (define-public r-zoo (package (name "r-zoo") - (version "1.8-3") + (version "1.8-4") (source (origin (method url-fetch) (uri (cran-uri "zoo" version)) (sha256 (base32 - "15jmkgwvq2mm9f09vijgx7sff8pszh90fndcwhk2vw9i0p183di0")))) + "1pywcp86kqijdrvl42qwdy75szrag9pzj0p88zbrj2r1klb8rn5i")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -4735,14 +4740,14 @@ can be efficiently implemented directly in the R language.") (define-public r-robustbase (package (name "r-robustbase") - (version "0.93-2") + (version "0.93-3") (source (origin (method url-fetch) (uri (cran-uri "robustbase" version)) (sha256 (base32 - "1632p73iv9iqqm0v3k9rfv9way0him3fl35si1nly9wi5kpq5ci7")))) + "1nqh1qg1qd1qrxl1w585dqx7ql55qzjny1r4f9hqxpwd7lml07cc")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) @@ -5084,17 +5089,19 @@ expected shortfall risk are also included.") (define-public r-nloptr (package (name "r-nloptr") - (version "1.0.4") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "nloptr" version)) (sha256 (base32 - "1sz1xj3785x4vsm4nd6in298bk32hs2jk5nsxma7ivxi7jcmn8l4")))) + "15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz")))) (build-system r-build-system) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("r-knitr" ,r-knitr) ; for building vignettes + ("pkg-config" ,pkg-config) + ("gfortran" ,gfortran))) (inputs `(("nlopt" ,nlopt))) (home-page "https://cran.r-project.org/web/packages/nloptr") @@ -5165,14 +5172,14 @@ bootstrap test for generalized linear mixed models.") (define-public r-cardata (package (name "r-cardata") - (version "3.0-1") + (version "3.0-2") (source (origin (method url-fetch) (uri (cran-uri "carData" version)) (sha256 (base32 - "193pdwgw6gk19v7swk1kwphg3vqdmpsgi555g9nyz93sa39j7r8j")))) + "152lfgaspgx6x2wzdb5p3zv6r87a0d2pg10h6fjmdr613kzlwp1v")))) (properties `((upstream-name . "carData"))) (build-system r-build-system) (home-page "https://r-forge.r-project.org/projects/car/") |