diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 92 |
1 files changed, 48 insertions, 44 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index d8c1e6df33..5c01a4ae06 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -213,9 +213,9 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ "/share/zoneinfo")) #t)) (add-after 'build 'make-info - (lambda _ (zero? (system* "make" "info")))) + (lambda _ (invoke "make" "info"))) (add-after 'build 'install-info - (lambda _ (zero? (system* "make" "install-info"))))) + (lambda _ (invoke "make" "install-info")))) #:configure-flags `(;; We build the recommended packages here, because they are needed in ;; order to run the test suite. We disable them in the r-minimal @@ -423,14 +423,14 @@ code for possible problems.") (define-public r-foreign (package (name "r-foreign") - (version "0.8-70") + (version "0.8-71") (source (origin (method url-fetch) (uri (cran-uri "foreign" version)) (sha256 (base32 - "11mql8q3i1q593dvd351fhvkvfab25li80d1ahl4xjjzy52qdkc6")))) + "1mv04w3ycz0ymsszn8aa87k6k5sb8mg8lhf1b8w4zpfrphpkkliv")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/foreign") (synopsis "Read data stored by other statistics software") @@ -614,14 +614,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "2.42-3") + (version "2.42-6") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "15pasbfzmg2r5bfpsadp9ia4cpybqz6n1kwm7ma02ykzf7bk4xx0")))) + "1bsxc2fir9pbvdzy9n474fkl7har606h9zhspp0z67wnjpp48g73")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -725,13 +725,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.15") + (version "0.6.16") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "1ia4ak956gnn0f5aqhwgam6g9z6f1y57zz8jv45jc8h79yxp8bl8")))) + (base32 "1lhs59pdjhpb63jyy98pi1shk9shw044k6vl0mvw0f40v08326ar")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -1061,13 +1061,13 @@ legends.") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "2.2.1") + (version "3.0.0") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0543782ddv2hp6s0l702mnxfg8n7a6qlbm8bm55x22hnqgz8kg2z")))) + (base32 "0kb977hizsvk3b1k3zr717q78bpmbabhl8cj9a3w717nkq1zas67")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1075,11 +1075,15 @@ legends.") ("r-plyr" ,r-plyr) ("r-lazyeval" ,r-lazyeval) ("r-mass" ,r-mass) + ("r-mgcv" ,r-mgcv) ("r-tibble" ,r-tibble) ("r-reshape2" ,r-reshape2) + ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) - ("r-svglite" ,r-svglite))) ; Needed for 'ggsave' - (home-page "http://ggplot2.org") + ("r-svglite" ,r-svglite) ; Needed for 'ggsave' + ("r-viridislite" ,r-viridislite) + ("r-withr" ,r-withr))) + (home-page "https://ggplot2.tidyverse.org") (synopsis "An implementation of the grammar of graphics") (description "Ggplot2 is an implementation of the grammar of graphics in R. It @@ -1573,13 +1577,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0ghg66vyri8nck4p6kl1nh47qdppbmxvjiyms69nhvipphk4ifpj")))) + "0cqd894wzi53rs53prg0j7i75h0yzgi0127fzjqbdbhczwh984f9")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1615,13 +1619,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "0.7.5") + (version "0.7.6") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0l6smzdgb8w505gyl8gnwlg988a6cmafh3rssiv00rsrd8qqzg9g")))) + "0c43h13s5mr0fklikbbm89gs6z5n66rkjzdv6w3w6kl5af5wr2fl")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -2261,14 +2265,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "1qyql5gpwf88bkm1qarjhbqbq4hn6w0d8j4pxb5x7i96is30ap30")))) + "1djfpnphkcxx8idk5rjfzg8r8dnqsgc0shh2pw8lns5hap2wc5rc")))) (build-system r-build-system) (inputs `(("libressl" ,libressl))) @@ -2360,13 +2364,13 @@ informative error messages when it's not available.") (define-public r-devtools (package (name "r-devtools") - (version "1.13.5") + (version "1.13.6") (source (origin (method url-fetch) (uri (cran-uri "devtools" version)) (sha256 (base32 - "1x3wsk7dh3yakii61kbfvafx9yz66h40ixiwfkf03dnp2n24hngs")))) + "1d9n49djydywfyp9w3njgxs5lag4ac7719wmxy1lkgcmn3l9sx5r")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -2558,13 +2562,13 @@ vectors.") (define-public r-catools (package (name "r-catools") - (version "1.17.1") + (version "1.17.1.1") (source (origin (method url-fetch) (uri (cran-uri "caTools" version)) (sha256 (base32 - "1x4szsn2qmbzpyjfdaiz2q7jwhap2gky9wq0riah74q0pzz76ank")))) + "01hccp05gz25vhz9nnxv1c91lrxlr7drcw9xf124gggifxf2qgnm")))) (properties `((upstream-name . "caTools"))) (build-system r-build-system) (propagated-inputs @@ -2683,13 +2687,13 @@ and draw tables.") (define-public r-pkgconfig (package (name "r-pkgconfig") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "pkgconfig" version)) (sha256 (base32 - "0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb")))) + "1jk9ip549xphb3anfixqv1yx5kidnndqgy9v3qjpmgmds5a7g695")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/pkgconfig") (synopsis "Private configuration for R packages") @@ -2982,14 +2986,14 @@ standard R subsetting and Kronecker products.") (define-public r-iterators (package (name "r-iterators") - (version "1.0.9") + (version "1.0.10") (source (origin (method url-fetch) (uri (cran-uri "iterators" version)) (sha256 (base32 - "16sycjq912ix52fjxjhcwiaqr0yj1v5iqmrvjljd3z857031w06y")))) + "1s3iykfvccpnzs73z90rx18qvbvgw2dgl4nfcrvm5m1850qb5qd9")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/iterators") (synopsis "Iterator construct for R") @@ -3319,14 +3323,14 @@ bigmemory and synchronicity packages.") (define-public r-synchronicity (package (name "r-synchronicity") - (version "1.3.4") + (version "1.3.5") (source (origin (method url-fetch) (uri (cran-uri "synchronicity" version)) (sha256 (base32 - "1km5hx82gy71m5nc6pkcksv0dn32fylhg2axpdsnarrxva14mgdg")))) + "1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -4466,14 +4470,14 @@ Farebrother's algorithm or Liu et al.'s algorithm.") (define-public r-cowplot (package (name "r-cowplot") - (version "0.9.2") + (version "0.9.3") (source (origin (method url-fetch) (uri (cran-uri "cowplot" version)) (sha256 (base32 - "13yjw7yv7imyqiawqqp304hkp6x36iv6rf6gn03dwzwkj9zwx4lb")))) + "1jrx1h0blkk577y4cvnjk7xccn7qmjiv2bnpgqlsjvjhsxglf41y")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -4603,14 +4607,14 @@ original public code has been corrected.") (define-public r-modeltools (package (name "r-modeltools") - (version "0.2-21") + (version "0.2-22") (source (origin (method url-fetch) (uri (cran-uri "modeltools" version)) (sha256 (base32 - "0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7")))) + "1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/modeltools") (synopsis "Tools and classes for statistical models") @@ -4649,14 +4653,14 @@ models, generalized linear models and model-based clustering.") (define-public r-mclust (package (name "r-mclust") - (version "5.4") + (version "5.4.1") (source (origin (method url-fetch) (uri (cran-uri "mclust" version)) (sha256 (base32 - "1i3v1q8qq0al3ifvjhcvxfsg68cx9mq8jz67jwmiqai78mw0aqvk")))) + "1vcl4nl8by2vj2k9k84imy5m850khkgd8q02a8ica1h8vz9ijgn4")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -4847,14 +4851,14 @@ multivariate analysis.") (define-public r-trimcluster (package (name "r-trimcluster") - (version "0.1-2") + (version "0.1-2.1") (source (origin (method url-fetch) (uri (cran-uri "trimcluster" version)) (sha256 (base32 - "0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2")))) + "0013bpyq6mkvjn38qsmwnsxfiwxgwngnqxycxvgpgmiadhm8fjmn")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/trimcluster") (synopsis "Cluster analysis with trimming") @@ -4868,14 +4872,14 @@ of the points.") (define-public r-fpc (package (name "r-fpc") - (version "2.1-11") + (version "2.1-11.1") (source (origin (method url-fetch) (uri (cran-uri "fpc" version)) (sha256 (base32 - "04alsqb5gbhsjg1000d8w52pmpnlwca29r0s12f7n7mdccdv6xar")))) + "1ari57hkgqsxh6khr6j52cfrzc0096cnn1q7ghxk2z4brdd4rznc")))) (build-system r-build-system) (propagated-inputs `(("r-class" ,r-class) @@ -4902,14 +4906,14 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.0-5") + (version "1.0-6") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 (base32 - "0ik3wyv6jj54bg34z0fzzk4xg0h6x98jqx4q2r7g1f0in0qgbb01")))) + "1fg31xz86jblqraifiy3q36d0hjqnll01jxx85xq87j1cyhj060j")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (inputs @@ -5093,14 +5097,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-17") + (version "1.1-18-1") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "0czwdy1s8h3slaw73pz0h8qmqczf5135fz6i46i2dv1ql2pbq49x")))) + "01ar4fak8zj7c1vmh9m576wchxj5qzpfqn637s7fh3fl6cpz0alq")))) (build-system r-build-system) (native-inputs `(("r-rcpp" ,r-rcpp) @@ -5168,14 +5172,14 @@ Companion to Applied Regression, Third Edition, Sage.") (define-public r-car (package (name "r-car") - (version "3.0-0") + (version "3.0-1") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 (base32 - "1ks2jaav8lbxhzw56vpbnysjk3pvpmqh6avd574k0bha1226k81h")))) + "0rdk7hgahs38j6yv861i31wpmsmyvksxcv8jarvvcjl60whizhb2")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) |