diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 146 |
1 files changed, 106 insertions, 40 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index ad3032e2ec..df2d56212e 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -65,7 +65,7 @@ (define-public pspp (package (name "pspp") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) @@ -73,7 +73,7 @@ version ".tar.gz")) (sha256 (base32 - "10yb8nknh33c1y2ji3gww5dcnx9n3nqgsj6yfb4wibdjypa1m68v")))) + "1r8smr5057993h90nx0mdnff8nxw9x546zzh6qpy4h3xblp1la5s")))) (build-system gnu-build-system) (inputs `(("cairo" ,cairo) @@ -106,7 +106,7 @@ be output in text, PostScript, PDF or HTML.") (define-public r-minimal (package (name "r-minimal") - (version "3.4.0") + (version "3.4.1") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -114,7 +114,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 - "14cb8bwi3akvdb6934kqic2862f2qgav6cq4g0h7gi2p4ka9x3i8")))) + "0y7wlfk3cn1dxn2mpnxwvsk31s0599crbsyah8srm5pa2mfi7c82")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-2017a) @@ -185,6 +185,14 @@ be output in text, PostScript, PDF or HTML.") (substitute* "src/library/tools/Makefile.in" (("(install_package_description\\(.*\"')\\)\"" line prefix) (string-append prefix ", builtStamp='1970-01-01')\""))) + + ;; R bundles an older version of help2man, which does not respect + ;; SOURCE_DATE_EPOCH. We cannot just use the latest help2man, + ;; because that breaks a test. + (with-fluids ((%default-port-encoding "ISO-8859-1")) + (substitute* "tools/help2man.pl" + (("my \\$date = strftime \"%B %Y\", localtime" line) + (string-append line " 1")))) #t)) (add-before 'configure 'set-default-pager ;; Set default pager to "cat", because otherwise it is "false", @@ -447,14 +455,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.2-10") + (version "1.2-11") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "0r3qjcz92xwgdzrfz444mqzwnja5sv9abaf252fh6k48qbyahahh")))) + "1yvd6fx3n99j4gvzrng43ji38pr5h8y03kijccgjdalym2hcp36g")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -492,14 +500,14 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-18") + (version "1.8-19") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 (base32 - "011mgcypr56xvm9nizsfsb2285kzql93x0d3lzg849g39vbpp4s2")))) + "18zpnqilc2586764j7smwbixxz5gzpkpz2gq8nwgidfkyqwrkc45")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -992,13 +1000,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-scales (package (name "r-scales") - (version "0.4.1") + (version "0.5.0") (source (origin (method url-fetch) (uri (cran-uri "scales" version)) (sha256 - (base32 "1lqccfmqdwrw0cjyqvw2zvgpk2jvnqrfb303l1raqyyf3zxqhav4")))) + (base32 "0zg9wfzmsdjxpbld0nzv7hcpq5r0wazqxmn7grvvif2agj0w1z6v")))) (build-system r-build-system) (propagated-inputs `(("r-dichromat" ,r-dichromat) @@ -1006,7 +1014,9 @@ using just two functions: melt and dcast (or acast).") ("r-munsell" ,r-munsell) ("r-plyr" ,r-plyr) ("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-rcpp" ,r-rcpp))) + ("r-rcpp" ,r-rcpp) + ("r-r6" ,r-r6) + ("r-viridislite" ,r-viridislite))) (home-page "https://github.com/hadley/scales") (synopsis "Scale functions for visualization") (description @@ -1159,13 +1169,13 @@ R/DBMS implementations.") (define-public r-bh (package (name "r-bh") - (version "1.62.0-1") + (version "1.65.0-1") (source (origin (method url-fetch) (uri (cran-uri "BH" version)) (sha256 (base32 - "01vfdpfznd4ynqql33z238xr262mvy3i80lyi8l3a3p3hi0a262p")))) + "0n6byzrvl1w4hjdxz479q4a7w1118f9ckqc4gqydq7lgzs5agfl2")))) (build-system r-build-system) (home-page "https://github.com/eddelbuettel/bh") (synopsis "R package providing subset of Boost headers") @@ -1300,13 +1310,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.16") + (version "1.17") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "02balmhvc955rkqv4v0wkxbw4vjphydajgcpy4ml0s3b4sziyj0h")))) + "00gljbz57n9lkvbd6az4n37gpbs8vg3fxx5p9biamhmhqyra514l")))) (build-system r-build-system) (propagated-inputs `(("r-evaluate" ,r-evaluate) @@ -1502,13 +1512,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.1.1") + (version "0.1.2") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0grwqy3zkvz96mvpwfbfyqid4jkfrqh3ldy2n6dpv2kjd1fzj0ar")))) + "1yc5qyq6h0nrya7m2fqnfv19zh5xwsl28jx6zi2g1zz6ra4cvkwh")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1520,14 +1530,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "1.3.3") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "1bhq4pm56l7l6s1k44ajrcr7hz56h37m9ck4zji9f8xfdqschbl0")))) + "02vn6yqzcvmazy5jaqar3wwbrmh83a1bfgsqgk0hgz38i80zgvm7")))) (build-system r-build-system) (propagated-inputs `(("r-rlang" ,r-rlang) @@ -1575,6 +1585,36 @@ matter where it is stored, whether in a data frame, a data table or database.") (license license:expat))) +(define-public r-dbplyr + (package + (name "r-dbplyr") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "dbplyr" version)) + (sha256 + (base32 + "17gn8vr4a6m9ynarjbm9xsrhcvgn5lnxhb2qhiiglmhh5mm4a7kv")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-dbi" ,r-dbi) + ("r-dplyr" ,r-dplyr) + ("r-glue" ,r-glue) + ("r-purrr" ,r-purrr) + ("r-r6" ,r-r6) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble))) + (home-page "https://github.com/tidyverse/dbplyr") + (synopsis "Dplyr back end for databases") + (description + "This package provides a dplyr back end for databases that allows you to +work with remote database tables as if they are in-memory data frames. Basic +features works with any database that has a @code{DBI} back end; more advanced +features require SQL translation to be provided by the package author.") + (license license:expat))) + (define-public r-acepack (package (name "r-acepack") @@ -1844,14 +1884,14 @@ chain.") (define-public r-ade4 (package (name "r-ade4") - (version "1.7-6") + (version "1.7-8") (source (origin (method url-fetch) (uri (cran-uri "ade4" version)) (sha256 (base32 - "0lnc37d6waajmagy8qvw206pyc4vgrpzl3hk3j9frh6wa0b8x140")))) + "1a5p3wf8l9cp1bjp57b1pc5bqs39kw1v21i4waj9j18wawzlmpb6")))) (build-system r-build-system) (home-page "http://pbil.univ-lyon1.fr/ADE-4") (synopsis "Multivariate data analysis and graphical display") @@ -2117,16 +2157,15 @@ other packages.") (define-public r-commonmark (package (name "r-commonmark") - (version "1.2") + (version "1.4") (source (origin (method url-fetch) (uri (cran-uri "commonmark" version)) (sha256 (base32 - "12q5mncxvkwdxc35is6y5idx8a1h99hyz5x6ri0arni6k25krchk")))) + "1vb8r9khpvcf0q7acv8rsplfjjwcll302bg5kp596cvn6aacypl6")))) (build-system r-build-system) - ;;(inputs `(("zlib" ,zlib))) (home-page "http://cran.r-project.org/web/packages/commonmark") (synopsis "CommonMark and Github Markdown Rendering in R") (description @@ -2198,22 +2237,20 @@ integers.") (define-public r-httr (package (name "r-httr") - (version "1.2.1") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "httr" version)) (sha256 (base32 - "03kkjlhyvvi5znwaxfm6cmdsg3q7ivwsvkzgabhjdj2jxs80pfg7")))) + "0n7jz2digbgv48rbr9vmzv4vmf4rahl9jjy31izs7sxj4rs4s4r2")))) (build-system r-build-system) (propagated-inputs `(("r-curl" ,r-curl) - ("r-digest" ,r-digest) ("r-jsonlite" ,r-jsonlite) ("r-openssl" ,r-openssl) ("r-mime" ,r-mime) - ("r-r6" ,r-r6) - ("r-stringr" ,r-stringr))) + ("r-r6" ,r-r6))) (home-page "https://github.com/hadley/httr") (synopsis "Tools for working with URLs and HTTP") (description @@ -2358,13 +2395,13 @@ disk (or a connection).") (define-public r-plotrix (package (name "r-plotrix") - (version "3.6-5") + (version "3.6-6") (source (origin (method url-fetch) (uri (cran-uri "plotrix" version)) (sha256 (base32 - "01655y3qzy0283ppc85bi0g42g20zrqzcl0qb30cl6rcbflhymlb")))) + "07hywp3ym0gbpqdj3f4vhr0bhmynhby8vh6p1b9cm2hv26pzs9q4")))) (build-system r-build-system) (home-page "http://cran.r-project.org/web/packages/plotrix") (synopsis "Various plotting functions") @@ -2417,13 +2454,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.7.900.2.0") + (version "0.7.960.1.2") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "01qsff2p1fp5i9lq7rsykrskgr6smz24ddspbl5ad9a8rkmczwyv")))) + "0kg8vbamaz3413h283f23hzgqkmfpf6fs0vbklmpj0l3ricvp9cc")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -3520,22 +3557,51 @@ perceived by readers with the most common form of color blindness. This is the 'lite' version of the more complete @code{viridis} package.") (license license:expat))) +(define-public r-tidyselect + (package + (name "r-tidyselect") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "tidyselect" version)) + (sha256 + (base32 + "1h10qc5bxk5v0zhmip3gwnzy50fs2gbdvcg2163is0k9a8rifq9r")))) + (build-system r-build-system) + (propagated-inputs + `(("r-glue" ,r-glue) + ("r-purrr" ,r-purrr) + ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang))) + (home-page "http://cran.r-project.org/web/packages/tidyselect") + (synopsis "Select from a set of strings") + (description + "This package provides a backend for the selecting functions of the +tidyverse. It makes it easy to implement select-like functions in your own +packages in a way that is consistent with other tidyverse interfaces for +selection.") + (license license:gpl3))) + (define-public r-tidyr (package (name "r-tidyr") - (version "0.6.3") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "14s57zrjm2phiy600z9ivq4az71z0ggmp6nj0js7yrybxf0dlah6")))) + "1lg0amx5hs37ajwjxz7ya50q4s28jcdj51kzl10s1x4l1akp7xls")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) - ("r-lazyeval" ,r-lazyeval) ("r-magrittr" ,r-magrittr) + ("r-glue" ,r-glue) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-tidyselect" ,r-tidyselect) ("r-rcpp" ,r-rcpp) ("r-stringi" ,r-stringi) ("r-tibble" ,r-tibble))) @@ -3906,14 +3972,14 @@ routines.") (define-public r-fastcluster (package (name "r-fastcluster") - (version "1.1.22") + (version "1.1.24") (source (origin (method url-fetch) (uri (cran-uri "fastcluster" version)) (sha256 (base32 - "006k9isra5biyavqwci61avladw19mhp6kmkjj3777rl1r4r8b9z")))) + "15drhl22wm8whsy6b3vv754skfddiydb068zn1whrw5sknvkkjc2")))) (build-system r-build-system) (home-page "http://danifold.net/fastcluster.html") (synopsis "Fast hierarchical clustering routines") @@ -5194,14 +5260,14 @@ multivariate case.") (define-public r-tclust (package (name "r-tclust") - (version "1.2-7") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "tclust" version)) (sha256 (base32 - "1mvqr280c6kwpg98byd0r1y0qf238xn2x15y8npqch6lpcszlb3x")))) + "1li62wynv81kb17fx7nk63a26qlb78l8fdf63in8yzcl7fkpji7y")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) |