diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 302 |
1 files changed, 228 insertions, 74 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 648462be03..f849107cfe 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -34,6 +34,7 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages statistics) + #:use-module (guix gexp) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) #:use-module (guix download) @@ -109,6 +110,14 @@ (base32 "0lqrash677b09zxdlxp89z6k02y4i23mbqg83956dwl69wc53dan")))) (build-system gnu-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (add-before 'check 'prepare-tests + ;; Prevent irrelevant errors that cause test output mismatches: + ;; ‘Fontconfig error: No writable cache directories’ + (lambda _ + (setenv "XDG_CACHE_HOME" (getcwd))))))) (inputs (list cairo gettext-minimal @@ -676,13 +685,13 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-38") + (version "1.8-39") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 - (base32 "1fyx8b0xjyx75mp90v314gayzydkca5y90p76jnwxzfnhxbys4nd")))) + (base32 "15h1k9qyn8s8xy4x2361mj42vdq8ml5xskzqpkc45zj1a3gss6w4")))) (build-system r-build-system) (propagated-inputs (list r-matrix r-nlme)) @@ -756,14 +765,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "3.2-13") + (version "3.3-1") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "0zrikancm9shixvgng89f1610sphlwljczi0fnjbdqn4l85rrarz")))) + "1isdrcvrzi118xiyigckj9sq1xl4m92180brmpzdqzhcrl2qg1ql")))) (build-system r-build-system) (propagated-inputs (list r-matrix)) @@ -1242,13 +1251,13 @@ aesthetic attributes.") (define-public r-ggdendro (package (name "r-ggdendro") - (version "0.1.22") + (version "0.1.23") (source (origin (method url-fetch) (uri (cran-uri "ggdendro" version)) (sha256 (base32 - "0skbj487b6f6pj2iz4yq2b9gbgb39cv5dyzhdl3w7ay1k0s5z9ph")))) + "1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs")))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-mass)) @@ -1268,19 +1277,19 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.3") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "1p3ip0qwpg8f63jfx0b8vbac6l20ddid8xvxzkfi6i858pybnawp")))) + "0a1hqg5b484ji4g9dy0zi06wn9w7pk6hiy5ljzc1zgj9mbhlr21j")))) (build-system r-build-system) (native-inputs (list pkg-config)) (inputs - (list cairo freetype zlib)) + (list cairo fontconfig freetype zlib)) (propagated-inputs (list r-rcpp r-systemfonts)) (home-page "https://cran.r-project.org/web/packages/gdtools") @@ -1293,14 +1302,14 @@ and to generate base64 encoded string from raster matrix.") (define-public r-svglite (package (name "r-svglite") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "svglite" version)) (sha256 (base32 - "19ggknw5322yw7r1bzhw0bqggcrpn0qxddk7kblpqnra2zz2brkn")))) + "16wwhfmp9agdz9azslgd8qs77fllhdp6p0m304qfh2p8qy8gah5d")))) (build-system r-build-system) (inputs (list libpng zlib)) @@ -1398,13 +1407,13 @@ for template use among CRAN packages.") (define-public r-evaluate (package (name "r-evaluate") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "evaluate" version)) (sha256 (base32 - "0a2y7j534gbgixkwj9r1z76l2vssw4g1hznzbpclc076wkdqpj58")))) + "0pbwj02y2j7r0msa7747ih1p32xm9bcyr8fa7bysfslb199ywnl8")))) (build-system r-build-system) (home-page "https://github.com/hadley/evaluate") (synopsis "Parsing and evaluation tools for R") @@ -1510,13 +1519,13 @@ syntax that can be converted to XHTML or other formats.") (define-public r-yaml (package (name "r-yaml") - (version "2.2.2") + (version "2.3.5") (source (origin (method url-fetch) (uri (cran-uri "yaml" version)) (sha256 (base32 - "0c7pk5fq79mkqpc398hg8zj01frv4araglyppli49sqr4yx6mp55")))) + "0h2ixd95ww12ir13fdzbvjq4lsz6l8hmgv4bbsi89qd0ah2nrpry")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/yaml/") (synopsis "Methods to convert R data to YAML and back") @@ -1631,13 +1640,13 @@ you call it again with the same arguments it returns the pre-computed value.") (define-public r-crayon (package (name "r-crayon") - (version "1.4.2") + (version "1.5.0") (source (origin (method url-fetch) (uri (cran-uri "crayon" version)) (sha256 (base32 - "0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f")))) + "0m3rckps0c8v14h9vqnr81acv0az1jqwlsradcbkb2ndvnpjq4j4")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/crayon") (synopsis "Colored terminal output for R") @@ -1733,13 +1742,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "1.0.0") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0skf75rhq9y6f09shcjlm1dlh7rlwpyr4mx1l8xn201igg4k8qdb")))) + "1k6pzl2x80pycpllvd8n1k62h5cfdwc0hsdwvbicrcxhdwz7rs4d")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1781,17 +1790,16 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.7") + (version "1.0.8") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0g8jsxclj9cgm7a2lyazy78sj62rbzw812lsw3fdsbz0pknkmznj")))) + "0xb04ckp29pva1h2rfahqhmk9gcwp2dbbx3av8ip40v7dnha6siv")))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis - r-generics + (list r-generics r-glue r-lifecycle r-magrittr @@ -1900,14 +1908,14 @@ side.") (define-public r-locfit (package (name "r-locfit") - (version "1.5-9.4") + (version "1.5-9.5") (source (origin (method url-fetch) (uri (cran-uri "locfit" version)) (sha256 (base32 - "1vcw16qww4v4547w0gfvhqg60l051bsdlxa6zfcgcj9xbxf6dlyr")))) + "08yywswywmvyys8380576n43h3xyiviq1p2392zcivlbknnjp7zx")))) (build-system r-build-system) (propagated-inputs (list r-lattice)) @@ -2259,18 +2267,18 @@ worries about execution time overhead.") (define-public r-bbmisc (package (name "r-bbmisc") - (version "1.11") + (version "1.12") (source (origin (method url-fetch) (uri (cran-uri "BBmisc" version)) (sha256 (base32 - "1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y")))) + "0gh5f342rwra79i7imv50x8vrhd2zkifm7khb0yv3ndpd4zn62lh")))) (properties `((upstream-name . "BBmisc"))) (build-system r-build-system) (propagated-inputs - (list r-checkmate)) + (list r-checkmate r-data-table)) (home-page "https://github.com/berndbischl/BBmisc") (synopsis "Miscellaneous functions for R package development") (description @@ -2334,13 +2342,13 @@ SLURM and Sun Grid Engine. Multicore and SSH systems are also supported.") (define-public r-brew (package (name "r-brew") - (version "1.0-6") + (version "1.0-7") (source (origin (method url-fetch) (uri (cran-uri "brew" version)) (sha256 (base32 - "1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp")))) + "0vp7d628j6zzxhh6xfw5jlkv7wh6z2l3snbwjgv7jd56vk0mkf1q")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/brew") (synopsis "Templating framework for report generation") @@ -2353,17 +2361,17 @@ module, Java Server Pages, and Python's psp module.") (define-public r-desc (package (name "r-desc") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (cran-uri "desc" version)) (sha256 (base32 - "0jfnwn1kpiill8v4hmzdk90yz4gk2ha0prr2p0hq36s40v3y8842")))) + "0m3g5m0g08k674zh4lq0ihmqiwz8jpsfqrdwfqp5p4ngxi8vp7lg")))) (build-system r-build-system) (propagated-inputs - (list r-crayon r-r6 r-rprojroot)) + (list r-cli r-r6 r-rprojroot)) (home-page "https://github.com/r-pkgs/desc") (synopsis "Manipulate DESCRIPTION Files") (description @@ -2375,14 +2383,14 @@ other packages.") (define-public r-commonmark (package (name "r-commonmark") - (version "1.7") + (version "1.8.0") (source (origin (method url-fetch) (uri (cran-uri "commonmark" version)) (sha256 (base32 - "024iz1qp2kv6iz6y69ir0jk3qhjps86rhkzlcmhqsxx97rx7cjni")))) + "0s765c650id19ygx57bsjsw93fwxywmp50zid671bkxi6wlyf1vx")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/commonmark") (synopsis "CommonMark and Github Markdown Rendering in R") @@ -2432,14 +2440,14 @@ collation, and NAMESPACE files.") (define-public r-openssl (package (name "r-openssl") - (version "1.4.6") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "openssl" version)) (sha256 (base32 - "0na3yficxg0hjql9pvz96f66yh4g5k2hfwcricb705z7f2pk5f23")))) + "0jsnzxa72bfxsdai25xyklmmrraaf9yv2nmqmf0bgzrkbzkgsa7b")))) (build-system r-build-system) (arguments (list @@ -2581,13 +2589,13 @@ tools to simplify the devolpment of R packages.") (define-public r-withr (package (name "r-withr") - (version "2.4.3") + (version "2.5.0") (source (origin (method url-fetch) (uri (cran-uri "withr" version)) (sha256 (base32 - "0k4x2bd9wb24n3dyg7rdjicdjs5ay2kk5lfgkrcjsv6cki2wgnlv")))) + "1h4bzj0am9lawbh1cam1jmgk1xjmn9da14r90w3q984hswz7nc9p")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -2805,17 +2813,18 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.11") + (version "2.13") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "0xcpg9d009a71p5i6jczw02qcp907p5d52lp6vclrsp7019jawck")))) + (base32 "0i07p3dxxv2s2a4xmyhc3qxmwg86vakniq5jjjclmcq2sahvw5vj")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs - (list r-evaluate + (list r-bslib + r-evaluate r-htmltools r-jquerylib r-jsonlite @@ -2919,13 +2928,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.9") + (version "2.2.10") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "075vsnbkcwpwnn87b06mhbg2fflqhjvbylhbkg0d3v3rl7zg28s4")))) + "1a00i24g4d4gvp7qmivpyfm24yfz4w4wsy2kplgfz0i0j0rzzbh6")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -2992,13 +3001,13 @@ ldap, and also supports cookies, redirects, authentication, etc.") (define-public r-xml (package (name "r-xml") - (version "3.99-0.8") + (version "3.99-0.9") (source (origin (method url-fetch) (uri (cran-uri "XML" version)) (sha256 (base32 - "0l3bsgqw4bicv3sl2bfag7p4rh1y2pcyg0ajr73kkbg85qf6j7q8")))) + "02ba407ddgil4jbjzrbw756hlxzy3mihc5dk1ngcbvsp67gxw5cw")))) (properties `((upstream-name . "XML"))) (build-system r-build-system) @@ -3178,14 +3187,14 @@ standard R subsetting and Kronecker products.") (define-public r-iterators (package (name "r-iterators") - (version "1.0.13") + (version "1.0.14") (source (origin (method url-fetch) (uri (cran-uri "iterators" version)) (sha256 (base32 - "190i1y2493v5c9z8978rb3idlwsjymy67k1assa9znljqbj313kp")))) + "0yv7rh6ghlfx727xy2aq64a7skyxp9msakaffs641q9h15d0gwyf")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/iterators") (synopsis "Iterator construct for R") @@ -3198,14 +3207,14 @@ data.") (define-public r-foreach (package (name "r-foreach") - (version "1.5.1") + (version "1.5.2") (source (origin (method url-fetch) (uri (cran-uri "foreach" version)) (sha256 (base32 - "1qb83b1jvpmk8d6kfibkm5q2hiki0x5gipy758mwa62n56gdcnpv")))) + "1r5gdf9fp3rprvrhf0gzl9qmmqhgdn5gscpm5hk8zxpraf3qscsn")))) (build-system r-build-system) (propagated-inputs (list r-codetools r-iterators)) @@ -3227,14 +3236,14 @@ parallel.") (define-public r-doparallel (package (name "r-doparallel") - (version "1.0.16") + (version "1.0.17") (source (origin (method url-fetch) (uri (cran-uri "doParallel" version)) (sha256 (base32 - "1cjf0mxrxgls5pl7aj22fv9j488craib1wkc9np4f3gkckwjdfzi")))) + "1mxbg2qqda1775vb4s26gz27p5n91lljgjmlqxq4sras22njasmr")))) (properties `((upstream-name . "doParallel"))) (build-system r-build-system) (propagated-inputs @@ -3249,14 +3258,14 @@ using the parallel package.") (define-public r-domc (package (name "r-domc") - (version "1.3.7") + (version "1.3.8") (source (origin (method url-fetch) (uri (cran-uri "doMC" version)) (sha256 (base32 - "0kdmfhp5m1wisjbfyl9d040jrmjmhcgjb0vdi536g2i9vixb5yny")))) + "18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j")))) (properties `((upstream-name . "doMC"))) (build-system r-build-system) (propagated-inputs @@ -3556,13 +3565,13 @@ using the multicore functionality of the parallel package.") "datatables-extensions/Select")))) (package (name "r-dt") - (version "0.20") + (version "0.21") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "17xs18i439p15agyk7z2xyyrwgrpn5pw09kd3jwxn7qhxi4pyvf6")) + "1yhlph9h8z78wqjddv598l2xrqpp605d70cxfb69m53hanw4hmzn")) (modules '((guix build utils))) (snippet '(for-each delete-file @@ -4148,14 +4157,14 @@ more complete @code{viridis} package.") (define-public r-tidyselect (package (name "r-tidyselect") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "tidyselect" version)) (sha256 (base32 - "0ss8mq05mwif64cj8zmrfx0ljgy3n0fvyv7f37782shr8rknmsqq")))) + "0w423pmg9wjx6q2rnp2ap66323rxvpmzd4nnsqq4m58pajqs7283")))) (build-system r-build-system) (propagated-inputs (list r-ellipsis r-glue r-purrr r-rlang r-vctrs)) @@ -4173,14 +4182,14 @@ selection.") (define-public r-tidyr (package (name "r-tidyr") - (version "1.1.4") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "0h8jfsmn4r7zgfyjmg2qkjd54n0sncq07xjh4mdf2cx4k2z9h30b")))) + "1a0k296a0jb2xi5zgfrqfmmw8197bwibjl7a04fm49vqx6livl4c")))) (build-system r-build-system) (propagated-inputs (list r-cpp11 @@ -5035,14 +5044,14 @@ perform @dfn{independent component analysis} (ICA) and projection pursuit.") (define-public r-randomforest (package (name "r-randomforest") - (version "4.6-14") + (version "4.7-1") (source (origin (method url-fetch) (uri (cran-uri "randomForest" version)) (sha256 (base32 - "0kbmm0l42fc2d1rdq0l7k09d34kd87q4lx651ffsic4y84h8kf7l")))) + "04q6gb917md4yw837cf9vlx1q8ljl06jw7yhykzb6nl47w55jnkq")))) (properties `((upstream-name . "randomForest"))) (build-system r-build-system) (home-page "https://www.stat.berkeley.edu/~breiman/RandomForests/") @@ -5235,14 +5244,14 @@ analysis} (PCA) by projection pursuit.") (define-public r-rrcov (package (name "r-rrcov") - (version "1.6-1") + (version "1.6-2") (source (origin (method url-fetch) (uri (cran-uri "rrcov" version)) (sha256 (base32 - "142x60zcgz61iw0ps78hh4cmny3ch0hb3lac6z87bhys5c7m0fwz")))) + "18x8y2b9n2plpn4086nkjk9c27p7gb78kbrv5pj9r8fb0idl5rn5")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-mvtnorm r-pcapp r-robustbase)) @@ -5286,14 +5295,14 @@ generally.") (define-public r-robust (package (name "r-robust") - (version "0.6-1") + (version "0.7-0") (source (origin (method url-fetch) (uri (cran-uri "robust" version)) (sha256 (base32 - "0z8i0qqlsa6vpl457qir3dlsynhjfn2g22436d776vxwyqjx4vs9")))) + "1fc4h19b7gn9ya2j2ia8vfgsycwlyc23frj54k11dr45w4qaq6jy")))) (build-system r-build-system) (propagated-inputs (list r-fit-models r-lattice r-mass r-robustbase r-rrcov)) @@ -5363,13 +5372,13 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.1-5") + (version "1.1-6") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 - (base32 "1fx123h4x5awzshv0m4jqbbllrdjfpslb2i8gl9phm1y1wahn69h")))) + (base32 "05yl1lbpambwg3i3rqn6aanaym7c3s8g7hi0bph98iyxqnx62sj4")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (native-inputs @@ -5498,13 +5507,13 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.87") + (version "5.88") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "13m3znkrrkf19s3lz6984lzrznng4nma38yy17pqjfzmwl4yzmws")))) + (base32 "0grsha18zkiil0qnxc1d7kc3w26i6aaa4av9n9ahdm8yf59yah0r")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -5551,14 +5560,14 @@ algorithms.") (define-public r-lme4 (package (name "r-lme4") - (version "1.1-27.1") + (version "1.1-28") (source (origin (method url-fetch) (uri (cran-uri "lme4" version)) (sha256 (base32 - "1i9f8kl2qj48j75dbn1vmwxz1xlbikdr7v2yq542w6dq74z8gyi5")))) + "03nw76bfyas6cdm9chyxqm5ks6r0qklf2fdy7h4pqrqss325x1fi")))) (build-system r-build-system) (propagated-inputs (list r-boot @@ -5759,14 +5768,14 @@ first and second order derivatives.") (define-public r-sn (package (name "r-sn") - (version "2.0.1") + (version "2.0.2") (source (origin (method url-fetch) (uri (cran-uri "sn" version)) (sha256 (base32 - "1z58kwvq8igjm3biyyjdlhs2qq8hfjq5d9x0lzy80yk5hw08kcw6")))) + "140p1pl5sq0laxhcm16kbqm986hlhqj90gj3jccga491gh14jywm")))) (build-system r-build-system) (propagated-inputs (list r-mnormt r-numderiv r-quantreg)) @@ -6160,6 +6169,45 @@ structure, and allows relevant features to be embedded directly onto the visualization, facilitating interpretation of the data.") (license license:gpl2)))) +(define-public r-languageserver + (let ((commit "004da9388f9b19990f031c8dc9b527fb406378ba") + (revision "1")) + (package + (name "r-languageserver") + (version (git-version "0.3.12" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/REditorSupport/languageserver") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05f22bjpc87fngzq4jsk2q2yb2i3ha03b377r0wx15d0b8xaa1ix")))) + (properties `((upstream-name . "languageserver"))) + (build-system r-build-system) + (propagated-inputs + (list r-callr + r-collections + r-fs + r-jsonlite + r-lintr + r-r6 + r-roxygen2 + r-stringi + r-styler + r-xml2 + r-xmlparsedata)) + (home-page "https://github.com/REditorSupport/languageserver") + (synopsis "Language Server for R") + (description + "This package provides an implementation of the Language Server +Protocol for R. The +@url{https://microsoft.github.io/language-server-protocol/,Language Server +protocol} is used by an editor client to integrate features like auto +completion.") + (license license:expat)))) + (define-public python-rpy2 (package (name "python-rpy2") @@ -6939,3 +6987,109 @@ is used to allow menus, dialogs, and the response to mouse actions to be customized.") (home-page "http://homepage.divms.uiowa.edu/~luke/xls/xlsinfo/") (license license:expat)))) + +(define-public r-rlrsim + (package + (name "r-rlrsim") + (version "3.1-6") + (source + (origin + (method url-fetch) + (uri (cran-uri "RLRsim" version)) + (sha256 + (base32 "1wkkibr250frsbfq70m9jdrylxb492zibf5w03z6zis98pjffssp")))) + (properties `((upstream-name . "RLRsim"))) + (build-system r-build-system) + (propagated-inputs (list r-lme4 r-mgcv r-nlme r-rcpp)) + (home-page "https://github.com/fabian-s/RLRsim") + (synopsis + "Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models") + (description + "Rapid, simulation-based exact (restricted) likelihood ratio tests for testing +the presence of variance components/nonparametric terms for models fit with +@code{nlme::lme()}, @code{lme4::lmer()}, @code{lmeTest::lmer()}, +@code{gamm4::gamm4()}, @code{mgcv::gamm()} and @code{SemiPar::spm()}.") + (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-binom + (package + (name "r-binom") + (version "1.1-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "binom" version)) + (sha256 + (base32 "0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c")))) + (properties `((upstream-name . "binom"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=binom") + (synopsis "Binomial Confidence Intervals For Several Parameterizations") + (description + "Constructs confidence intervals on the probability of success in a binomial +experiment via several parameterizations") + (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-simr + (package + (name "r-simr") + (version "1.0.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "simr" version)) + (sha256 + (base32 "1q8ip54c5pc7pjf8127jpk56nr3f8rmwqdcrr84faj4lfbr27wqb")))) + (properties `((upstream-name . "simr"))) + (build-system r-build-system) + (propagated-inputs + (list r-binom + r-car + r-iterators + r-lme4 + r-lmertest + r-pbkrtest + r-plotrix + r-plyr + r-rlrsim + r-stringr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/pitakakariki/simr") + (synopsis + "Power analysis for generalized linear mixed models by simulation") + (description + "This package lets you calculate power for generalized linear mixed +models, using simulation. It was designed to work with models fit using the +@code{lme4} package. The package is described in +@url{doi:10.1111/2041-210X.12504, Green and MacLeod (2016)}.") + (license license:gpl2+))) + +(define-public r-mixedpower + (package + (name "r-mixedpower") + (version "2.0") + (source + (origin + ;; Not available on CRAN. + (method git-fetch) + (uri (git-reference + (url "https://github.com/DejanDraschkow/mixedpower") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1dy1i8lijbq59xl7482j17a0r4rsdy61smzddk8jsr8nygp2gqy8")))) + (properties `((upstream-name . "mixedpower"))) + (build-system r-build-system) + (propagated-inputs + (list r-doparallel r-foreach r-ggplot2 r-lme4 r-reshape2)) + (home-page "https://github.com/DejanDraschkow/mixedpower") + (synopsis + "Pilotdata based simulations for estimating power in linear mixed models") + (description + "Implementation of a simulation based aproach to power analysis. Mixedpower uses +lotdata and a linear mixed model fitted with lme4 to simulate new data sets. +wer is computed seperate for every effect in the model output as the relation +significant simulations to all simulations. More conservative simulations as +protection against a bias in the pilotdata are available aswell as methods for +otting the results.") + (license license:gpl3))) |