diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 224 |
1 files changed, 128 insertions, 96 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 11c7daca0b..4c9f1743f0 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -61,6 +61,7 @@ #:use-module (gnu packages python) #:use-module (gnu packages readline) #:use-module (gnu packages ssh) + #:use-module (gnu packages tcl) #:use-module (gnu packages texinfo) #:use-module (gnu packages time) #:use-module (gnu packages tls) @@ -112,10 +113,10 @@ be output in text, PostScript, PDF or HTML.") ;; Update this package together with the set of recommended packages: r-boot, ;; r-class, r-cluster, r-codetools, r-foreign, r-kernsmooth, r-lattice, ;; r-mass, r-matrix, r-mgcv, r-nlme, r-nnet, r-rpart, r-spatial, r-survival. -(define-public r-minimal +(define r-with-tests (package - (name "r-minimal") - (version "3.4.4") + (name "r-with-tests") + (version "3.5.0") (source (origin (method url-fetch) (uri (string-append "mirror://cran/src/base/R-" @@ -123,7 +124,7 @@ be output in text, PostScript, PDF or HTML.") version ".tar.gz")) (sha256 (base32 - "0dq3jsnwsb5j3fhl0wi3p5ycv8avf8s5j1y4ap3d2mkjmcppvsdk")))) + "0w38865laqg28cdhikxdxhx4rfp0kgcn72gakwypsy91br9ja5zx")))) (build-system gnu-build-system) (arguments `(#:disallowed-references (,tzdata-for-tests) @@ -216,17 +217,22 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ (add-after 'build 'install-info (lambda _ (zero? (system* "make" "install-info"))))) #:configure-flags - '(;; Do not build the recommended packages. The build system creates - ;; random temporary directories and embeds their names in some - ;; package files. We build these packages with the r-build-system - ;; instead. - "--without-recommended-packages" + `(;; We build the recommended packages here, because they are needed in + ;; order to run the test suite. We disable them in the r-minimal + ;; package. "--with-cairo" "--with-blas=-lopenblas" "--with-libpng" "--with-jpeglib" "--with-libtiff" "--with-ICU" + "--with-tcltk" + ,(string-append "--with-tcl-config=" + (assoc-ref %build-inputs "tcl") + "/lib/tclConfig.sh") + ,(string-append "--with-tk-config=" + (assoc-ref %build-inputs "tk") + "/lib/tkConfig.sh") "--enable-R-shlib" "--enable-BLAS-shlib" "--with-system-tre"))) @@ -265,6 +271,8 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\")) {\ ;; This avoids a reference to the ungraftable static bash. R uses the ;; detected shell for the "system" procedure. ("bash" ,bash-minimal) + ("tcl" ,tcl) + ("tk" ,tk) ("which" ,which) ("zlib" ,zlib))) (native-search-paths @@ -282,6 +290,19 @@ publication-quality data plots. A large amount of 3rd-party packages are available, greatly increasing its breadth and scope.") (license license:gpl3+))) +(define-public r-minimal + (package (inherit r-with-tests) + (name "r-minimal") + (arguments + `(#:tests? #f + ,@(substitute-keyword-arguments (package-arguments r-with-tests) + ((#:configure-flags flags) + ;; Do not build the recommended packages. The build system creates + ;; random temporary directories and embeds their names in some + ;; package files. We build these packages with the r-build-system + ;; instead. + `(cons "--without-recommended-packages" ,flags))))))) + (define-public rmath-standalone (package (inherit r-minimal) (name "rmath-standalone") @@ -318,14 +339,14 @@ D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.") (define-public r-mass (package (name "r-mass") - (version "7.3-49") + (version "7.3-50") (source (origin (method url-fetch) (uri (cran-uri "MASS" version)) (sha256 (base32 - "1yjbnj1p4z0vw84wga8q5fyqiw4n6r7pc6rdwam7vsbiamyzfcqs")))) + "16hasv9k4n773jsyzvh8s3gbga49hwdj8n5hxij6zqisy4i0kxq6")))) (properties `((upstream-name . "MASS"))) (build-system r-build-system) (home-page "http://www.stats.ox.ac.uk/pub/MASS4/") @@ -617,7 +638,7 @@ curves, Cox models, and parametric accelerated failure time models.") (name "r") (source #f) (build-system trivial-build-system) - (arguments '(#:builder (mkdir %output))) + (arguments '(#:builder (begin (mkdir %output) #t))) (propagated-inputs `(("r-minimal" ,r-minimal) ("r-boot" ,r-boot) @@ -639,14 +660,14 @@ curves, Cox models, and parametric accelerated failure time models.") (define-public r-bit (package (name "r-bit") - (version "1.1-12") + (version "1.1-14") (source (origin (method url-fetch) (uri (cran-uri "bit" version)) (sha256 (base32 - "0a6ig6nnjzq80r2ll4hc74za3xwzbzig6wlyb4dby0knzf3iqa6f")))) + "0m7jrqzpa1pk8ixcl814x06jf96nlvvr16x6did6cfk4zghsrfjw")))) (build-system r-build-system) (home-page "http://ff.r-forge.r-project.org") (synopsis "Class for vectors of 1-bit booleans") @@ -752,14 +773,14 @@ non-estimable cases correctly.") (define-public r-pheatmap (package (name "r-pheatmap") - (version "1.0.8") + (version "1.0.10") (source (origin (method url-fetch) (uri (cran-uri "pheatmap" version)) (sha256 (base32 - "1ik0k69kb4n7xl3bkx4p09kw08ri93855zcsxq1c668171jqfiji")))) + "1jzxs5hwbz3r0z2pp09i7fd14sndxnrbm3zibaac3kny4nzydzf7")))) (build-system r-build-system) (propagated-inputs `(("r-gtable" ,r-gtable) @@ -939,14 +960,14 @@ solution for sending email, including attachments, from within R.") (define-public r-stringi (package (name "r-stringi") - (version "1.1.7") + (version "1.2.2") (source (origin (method url-fetch) (uri (cran-uri "stringi" version)) (sha256 (base32 - "0nck1s2iglmkrn15ay2chrrwsy5lngcylz2sc87fxy5skxaahxdl")))) + "1z8yqnh3alq0xriz77vifgl27msf3av6maz07fld78m90ajb6y8r")))) (build-system r-build-system) (inputs `(("icu4c" ,icu4c))) (native-inputs `(("pkg-config" ,pkg-config))) @@ -965,13 +986,13 @@ transliteration, concatenation, date-time formatting and parsing, etc.") (define-public r-stringr (package (name "r-stringr") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "stringr" version)) (sha256 - (base32 "07dvfbkhv8gk6l32j43jvxpmqlhqp0mdby406h5a3bsc6k94ic13")))) + (base32 "0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs")))) (build-system r-build-system) (propagated-inputs `(("r-glue" ,r-glue) @@ -1188,13 +1209,13 @@ evaluation (NSE) in R.") (define-public r-dbi (package (name "r-dbi") - (version "0.8") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "DBI" version)) (sha256 (base32 - "16nf8flxr5vdz8yrpprfbzydy3ajixkp9hc8ibd9n7r9nc29waym")))) + "1x8wy2vg2gcgd9bww04qmf0dsn3kp0rfjd8q8j1r2x9zxccg25pz")))) (build-system r-build-system) (home-page "https://github.com/rstats-db/DBI") (synopsis "R database interface") @@ -1331,13 +1352,13 @@ syntax that can be converted to XHTML or other formats.") (define-public r-yaml (package (name "r-yaml") - (version "2.1.18") + (version "2.1.19") (source (origin (method url-fetch) (uri (cran-uri "yaml" version)) (sha256 (base32 - "15m4q5krfqg0avvqg9i2g6ns4757lk6zbyrwbx5c5bgh51glvd8v")))) + "04bzrnfgbpk0rhkvzwp3k3ip7jpq26bjxz71bx5mwxmcjdb07nz5")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/yaml/") (synopsis "Methods to convert R data to YAML and back") @@ -1376,19 +1397,20 @@ generation in R using Literate Programming techniques.") (define-public r-knitrbootstrap (package (name "r-knitrbootstrap") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "knitrBootstrap" version)) (sha256 (base32 - "089147g7nqp99rwdxxsfmklsrwc8aia09sr8ndmrc335r33v6r6p")))) + "1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3")))) (properties `((upstream-name . "knitrBootstrap"))) (build-system r-build-system) (propagated-inputs `(("r-knitr" ,r-knitr) - ("r-rmarkdown" ,r-rmarkdown))) + ("r-rmarkdown" ,r-rmarkdown) + ("r-markdown" ,r-markdown))) (home-page "https://github.com/jimhester/knitrBootstrap") (synopsis "Knitr bootstrap framework") (description @@ -1551,13 +1573,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0f87fhw5pj6s2zjdxnpnd7pwn78czdz71b0xhm5adqg1p38sfwj8")))) + "0ghg66vyri8nck4p6kl1nh47qdppbmxvjiyms69nhvipphk4ifpj")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1593,13 +1615,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "0.7.4") + (version "0.7.5") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "1hm8ml7yaraag1ak6kvz2mxx6if568c759ix8a1n9d7va03wj7vv")))) + "0l6smzdgb8w505gyl8gnwlg988a6cmafh3rssiv00rsrd8qqzg9g")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -1610,7 +1632,8 @@ and printing capabilities than traditional data frames.") ("r-glue" ,r-glue) ("r-pkgconfig" ,r-pkgconfig) ("r-bindrcpp" ,r-bindrcpp) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) (native-inputs `(("r-rcpp" ,r-rcpp) ("r-bh" ,r-bh))) @@ -1681,14 +1704,14 @@ transformations.") (define-public r-formula (package (name "r-formula") - (version "1.2-2") + (version "1.2-3") (source (origin (method url-fetch) (uri (cran-uri "Formula" version)) (sha256 (base32 - "0ad49bzip1zqmpj1d8jajwl4bd81fm3k6dq8p26x6mvlzc04dvwd")))) + "0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l")))) (properties `((upstream-name . "Formula"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/Formula") @@ -1742,13 +1765,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.10.4-3") + (version "1.11.4") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "12caklgr19vy9wprdks6zh825vr1iw1cajgwcnbpyvmijqdlz2xs")))) + "1mc1drqj5i5ar2za3nkh5j70y37s7z7xwqri2r2b72zkqggg3k7x")))) (build-system r-build-system) (home-page "https://github.com/Rdatatable/data.table/wiki") (synopsis "Enhanced version of data.frame R object") @@ -1824,14 +1847,15 @@ building design matrices.") (uri (pypi-uri "statsmodels" version)) (sha256 (base32 - "0j30v3932shnj9368c9jr3svkyrvfj90h2l7nxnqkbpv0svilhr6")) - (patches (search-patches "python-statsmodels-fix-tests.patch")))) + "0j30v3932shnj9368c9jr3svkyrvfj90h2l7nxnqkbpv0svilhr6")))) (build-system python-build-system) (arguments - `(#:phases + `(;; The test suite is very large and rather brittle. Tests often fail + ;; because of minor changes in dependencies that upstream hasn't fixed + ;; in a new release. + #:tests? #f + #:phases (modify-phases %standard-phases - ;; tests must be run after installation - (delete 'check) (add-after 'unpack 'set-matplotlib-backend-to-agg (lambda _ ;; Set the matplotlib backend to Agg to avoid problems using the @@ -1843,14 +1867,17 @@ building design matrices.") (string-append "import matplotlib;matplotlib.use('Agg');" line))) #t)) - (add-after 'install 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - ;; Make installed package available for running the tests - (add-installed-pythonpath inputs outputs) - (with-directory-excursion "/tmp" - (zero? (system* "nosetests" - "--stop" - "-v" "statsmodels")))))))) + ;; FIXME: This is a bug in version 0.8 since the upgrade to scipy 1.0. + ;; See https://github.com/statsmodels/statsmodels/issues/3931 + ;; This has been fixed in version 0.9. + (add-after 'unpack 'patch-for-scipy + (lambda _ + (substitute* "statsmodels/discrete/discrete_model.py" + (("return stats.chisqprob" match) + (string-append + "stats.chisqprob = lambda chisq, df: stats.chi2.sf(chisq, df);" + match))) + #t))))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy) @@ -2157,14 +2184,14 @@ module, Java Server Pages, and Python's psp module.") (define-public r-desc (package (name "r-desc") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "desc" version)) (sha256 (base32 - "0k07qighac1xzmm8k988zi7i88a0yfvia3gk5hbz0fyvb2v9kzrj")))) + "1s6s13fk6sxwcj8wzkwxl9vr33153xx11p5wi9avqx3rzkabavz6")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -2182,14 +2209,14 @@ other packages.") (define-public r-commonmark (package (name "r-commonmark") - (version "1.4") + (version "1.5") (source (origin (method url-fetch) (uri (cran-uri "commonmark" version)) (sha256 (base32 - "1vb8r9khpvcf0q7acv8rsplfjjwcll302bg5kp596cvn6aacypl6")))) + "1jwx5rgm0ypd9a3v4jd9za4a644rdzhk1n4dvmgkj9hdpwsida3z")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/commonmark") (synopsis "CommonMark and Github Markdown Rendering in R") @@ -2423,13 +2450,13 @@ disk (or a connection).") (define-public r-plotrix (package (name "r-plotrix") - (version "3.7") + (version "3.7-2") (source (origin (method url-fetch) (uri (cran-uri "plotrix" version)) (sha256 (base32 - "0rw81n9p3d2i03b4pgcfj5blryc94f29bm9a4j9bnp5h8qjj6pry")))) + "0hx3xv94gzlyy7ny5k4mzs7w1798h1zka175m5bkzc524493cm88")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/plotrix") (synopsis "Various plotting functions") @@ -2482,13 +2509,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.8.400.0.0") + (version "0.8.500.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "11y2ksf46zw6fcz0kk70szyfn7qqxwwd33xylrxvnyb7ldmbc5yr")))) + "1sh36dx6inmb56m40nigy94gxlgjva816qnlmjwg7y2bdvqj8vsi")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (native-inputs @@ -2694,13 +2721,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "0hknfqcgijdapx1ryy20zy68qmm8wsb1hjx4n4hmkgl552z82q5d")))) + "1giwk4335sc6yhj3rs8h070g1mwy38kyqyqv6vcfxvskykj7vp6z")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -2820,13 +2847,13 @@ plotted and compared with the asymptotic curve.") (define-public r-lambda-r (package (name "r-lambda-r") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (cran-uri "lambda.r" version)) (sha256 (base32 - "05cfaq9dbgdnmmj3d6ggmsw300qgiw8k7f6h6k0ylv63cf3v6pkq")))) + "0cc6pszs6yccn0hgjpyn9gspv9aiva9d91ba0640i5m0l5xy7n0c")))) (properties `((upstream-name . "lambda.r"))) (build-system r-build-system) (propagated-inputs @@ -3149,20 +3176,24 @@ path-wise fashion.") (define-public r-pkgmaker (package (name "r-pkgmaker") - (version "0.22") + (version "0.27") (source (origin (method url-fetch) (uri (cran-uri "pkgmaker" version)) (sha256 (base32 - "0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r")))) + "0spcamjncj78kzjps2rw4v1a4494yazv6xvhn0vmdflnypc8k8hp")))) (build-system r-build-system) (propagated-inputs - `(("r-codetools" ,r-codetools) + `(("r-bibtex" ,r-bibtex) + ("r-codetools" ,r-codetools) ("r-digest" ,r-digest) + ("r-magrittr" ,r-magrittr) ("r-registry" ,r-registry) + ("r-stringi" ,r-stringi) ("r-stringr" ,r-stringr) + ("r-withr" ,r-withr) ("r-xtable" ,r-xtable))) (home-page "https://renozao.github.io/pkgmaker") (synopsis "Package development utilities") @@ -3194,14 +3225,14 @@ package registries.") (define-public r-rngtools (package (name "r-rngtools") - (version "1.2.4") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "rngtools" version)) (sha256 (base32 - "1fcgfqrrb48z37xgy8sffx91p9irp39yqzxv7nqp1x2hnwsrh097")))) + "097215qcfw6ybllpzmp1532r59h2srvch3aca4z4s6l2rf9w8gvn")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -3286,14 +3317,14 @@ bigmemory and synchronicity packages.") (define-public r-synchronicity (package (name "r-synchronicity") - (version "1.3.2") + (version "1.3.4") (source (origin (method url-fetch) (uri (cran-uri "synchronicity" version)) (sha256 (base32 - "1idrjzl7nkamf1ip55s6qcf64s63xs9j8z9jv3r89p6r5lw7k5mv")))) + "1km5hx82gy71m5nc6pkcksv0dn32fylhg2axpdsnarrxva14mgdg")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) @@ -3502,13 +3533,13 @@ vignettes.") (define-public r-mvtnorm (package (name "r-mvtnorm") - (version "1.0-7") + (version "1.0-8") (source (origin (method url-fetch) (uri (cran-uri "mvtnorm" version)) (sha256 (base32 - "0f7hzflygdnbwvzadr3knhybhanwg7agqddclj6mhbvwqpgb0qyh")))) + "0la42lylb7cjrcrc285bn69bz9kyg556xw317iz139dp1yswl410")))) (build-system r-build-system) (inputs `(("gfortran" ,gfortran))) @@ -3623,14 +3654,14 @@ selection.") (define-public r-tidyr (package (name "r-tidyr") - (version "0.8.0") + (version "0.8.1") (source (origin (method url-fetch) (uri (cran-uri "tidyr" version)) (sha256 (base32 - "1qjpbj1a2vw6nw4hdb6fgassnrxrdpqwf9a8i6wqnv3wxvjb6zqb")))) + "0485f19mkkglc4bv57y6bm6l9rfgd878hsz2xdg1nwgbqchjhgix")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -3679,14 +3710,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "0.2.4") + (version "0.2.5") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "0wgbnbrqncjpggg8f9bdpcd1gy351s5f0az5k8lc55cvs9lhz3gd")))) + "0dc53zzan3km2l9lzxjixcv6yn7dhw2ppmz8qf2awhak7x2qm9m4")))) (build-system r-build-system) (propagated-inputs `(("r-tibble" ,r-tibble) @@ -3945,14 +3976,14 @@ conversion of R objects to LaTeX code, and recoding variables.") (define-public r-runit (package (name "r-runit") - (version "0.4.31") + (version "0.4.32") (source (origin (method url-fetch) (uri (cran-uri "RUnit" version)) (sha256 (base32 - "1jqr871jkll2xmk7wk5hv1z3a36hyn2ibgivw7bwk4b346940xlx")))) + "1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3")))) (properties `((upstream-name . "RUnit"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/RUnit") @@ -3986,14 +4017,14 @@ hierarchical clustering dendrograms.") (define-public r-preprocesscore (package (name "r-preprocesscore") - (version "1.40.0") + (version "1.42.0") (source (origin (method url-fetch) (uri (bioconductor-uri "preprocessCore" version)) (sha256 (base32 - "0mrdgbkb9dcfr9gsqyxfpshnxx60mq97pl98b8yl00l2gfwz48ph")))) + "1afar1z7959v7mbzsqa77vqfh0yc7y3nv5ayx71485a8scwsfwbk")))) (properties `((upstream-name . "preprocessCore"))) (build-system r-build-system) @@ -4007,14 +4038,14 @@ routines.") (define-public r-fastcluster (package (name "r-fastcluster") - (version "1.1.24") + (version "1.1.25") (source (origin (method url-fetch) (uri (cran-uri "fastcluster" version)) (sha256 (base32 - "15drhl22wm8whsy6b3vv754skfddiydb068zn1whrw5sknvkkjc2")))) + "01a2xnhhvv1swd4g8p4lzyn7ww7kg49jlnzc7kfz60jqjzpisrpk")))) (build-system r-build-system) (home-page "http://danifold.net/fastcluster.html") (synopsis "Fast hierarchical clustering routines") @@ -4313,13 +4344,13 @@ data at that region, and avoids over-plotting.") (define-public r-ggthemes (package (name "r-ggthemes") - (version "3.4.2") + (version "3.5.0") (source (origin (method url-fetch) (uri (cran-uri "ggthemes" version)) (sha256 (base32 - "0i7ygpizs00acizixc29bhbrci523ys7vzxbii9b3bcmfa3pj7i3")))) + "0drbzzb4i5jq1579fx1wmgh87ybnswjn7srak2l8g771ip49xwb8")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) @@ -4731,14 +4762,14 @@ analysis} (PCA) by projection pursuit.") (define-public r-rrcov (package (name "r-rrcov") - (version "1.4-3") + (version "1.4-4") (source (origin (method url-fetch) (uri (cran-uri "rrcov" version)) (sha256 (base32 - "0kagqggi634mvrhd67ia7mpjrj5v6w2wq0z3kyppg5xkvzh335nq")))) + "0wn5h8vi0zyk5ah898m37ysz4kiih6y792nb9zdvhvd8r07f0sc5")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster) @@ -5006,14 +5037,14 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.35") + (version "5.36") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 (base32 - "18f3qxv1j1bqmq55hzssz8mnp5ww4flhy80rm2v1rk0mmg9paz7m")))) + "023gdzahxp582rpabilpxbl3wyjrgjjnnrhcv9xhrqdfiq5l2yza")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -5166,14 +5197,14 @@ to Applied regression, Second Edition, Sage, 2011.") (define-public r-caret (package (name "r-caret") - (version "6.0-79") + (version "6.0-80") (source (origin (method url-fetch) (uri (cran-uri "caret" version)) (sha256 (base32 - "1i6sjw279g6mj83vz5gv99x0nljcbpy7v0nbl72lmd80sf7rjshl")))) + "0xhdhazzfh0hiqv2hgxglj9ffd2p4ls8acqn2sjn0ndx6158f187")))) (build-system r-build-system) (propagated-inputs `(("r-foreach" ,r-foreach) @@ -5195,14 +5226,14 @@ classification and regression models.") (define-public r-rcppprogress (package (name "r-rcppprogress") - (version "0.4") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "RcppProgress" version)) (sha256 (base32 - "09ayw6d69i0lplmaj5md25p5hn1nmiyp6a4sh60v93nrrs1cq7iv")))) + "0yk01hfv961zyp569682k9igvhnwqyg5j0n5fm63sxigj82l2xhi")))) (properties `((upstream-name . "RcppProgress"))) (build-system r-build-system) (propagated-inputs @@ -5287,15 +5318,16 @@ multivariate case.") (define-public r-tclust (package (name "r-tclust") - (version "1.3-1") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "tclust" version)) (sha256 (base32 - "1li62wynv81kb17fx7nk63a26qlb78l8fdf63in8yzcl7fkpji7y")))) + "17md6l9v9dl9b72l84df01b52h2xiynbcjm437mv9mzcr09fc2sb")))) (build-system r-build-system) + ;; These are all suggested packages, not build dependencies. (propagated-inputs `(("r-cluster" ,r-cluster) ("r-mclust" ,r-mclust) @@ -5312,14 +5344,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).") (define-public r-ranger (package (name "r-ranger") - (version "0.9.0") + (version "0.10.1") (source (origin (method url-fetch) (uri (cran-uri "ranger" version)) (sha256 (base32 - "1pilj5pxl8jl0gsy9vsyqxqdqfcxzvphbgvrlp4hf7r9mrfw9v0p")))) + "12z67xkgdmr5cflpd6cln0mn5xxajanqbfwlckv6cfma0gvf2z1j")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -5531,14 +5563,14 @@ parameters.") (define-public r-directlabels (package (name "r-directlabels") - (version "2017.03.31") + (version "2018.05.22") (source (origin (method url-fetch) (uri (cran-uri "directlabels" version)) (sha256 (base32 - "01ahw0c56mnzwl611s8hnghicww4c4dgf5v2wv6bl1s1pramw9pr")))) + "0xcpc56ssb9430b0xcdhayk3qaak2qcakyss2pz14y5w2027hblv")))) (build-system r-build-system) (propagated-inputs `(("r-quadprog" ,r-quadprog))) |