diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 130 |
1 files changed, 66 insertions, 64 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 3c69901a0a..b4de0e812b 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -523,17 +523,17 @@ for reading and writing some dBase files.") (define-public r-kernsmooth (package (name "r-kernsmooth") - (version "2.23-15") + (version "2.23-16") (source (origin (method url-fetch) (uri (cran-uri "KernSmooth" version)) (sha256 (base32 - "1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb")))) + "1acrkbdn3a74y4dndkcdl1njnpfqz7gk3bsz03g8lfj8l7z53hmq")))) (properties `((upstream-name . "KernSmooth"))) (build-system r-build-system) - (inputs + (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/KernSmooth") (synopsis "Functions for kernel smoothing") @@ -589,14 +589,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-141") + (version "3.1-142") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 - "0ml00g79bimjcl0sgn6h55l5b4gfmnsnc1vvmivggn0318k4c04i")))) + (base32 "0figfb1i22hfkkhzpprmpp723s01r43x725a1ab0pc9gsxqg90nx")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -612,14 +611,13 @@ nonlinear mixed-effects models.") (define-public r-mgcv (package (name "r-mgcv") - (version "1.8-29") + (version "1.8-31") (source (origin (method url-fetch) (uri (cran-uri "mgcv" version)) (sha256 - (base32 - "1236gz25nap1aprbvcrqvmmnl6f8cvbjy8dcl4j968cpalqax5ww")))) + (base32 "1if34mqsn9r7g0l82lxvvx0wjhi9paqdymyd73nschxcl1if8vbk")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix) @@ -694,14 +692,14 @@ analysis.") (define-public r-survival (package (name "r-survival") - (version "2.44-1.1") + (version "3.1-7") (source (origin (method url-fetch) (uri (cran-uri "survival" version)) (sha256 (base32 - "1faiwyg7x8y2kfzb66l4yc8br0mdlz4k20znmjrwq96dbzhm3cam")))) + "1ij77bgfcjx29xkx5bck0sv4ybglpcmzzv9ilkinj8fqhhclbs8p")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -805,13 +803,13 @@ effects of different types of color-blindness.") (define-public r-digest (package (name "r-digest") - (version "0.6.21") + (version "0.6.22") (source (origin (method url-fetch) (uri (cran-uri "digest" version)) (sha256 - (base32 "0qycqchmv59fb6jp369d82mcx9xgbv70m18qzam0vrs8zkmajb17")))) + (base32 "1qav52y1qmkg9j2g48mrl6bbjwhs0fs9dl55xb62lfkrihkappqh")))) (build-system r-build-system) ;; Vignettes require r-knitr, which requires r-digest, so we have to ;; disable them and the tests. @@ -1200,14 +1198,14 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "1mvpkp8cj30fwd4bwlz96x3cff7yzfbfz7iswmf77zl0a6122inh")))) + "1aax50wyrs4336zpf247l8wmp4spab2n70msziy1ip4gbjn26wa1")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1451,13 +1449,13 @@ emitter (http://pyyaml.org/wiki/LibYAML) for R.") (define-public r-knitr (package (name "r-knitr") - (version "1.25") + (version "1.26") (source (origin (method url-fetch) (uri (cran-uri "knitr" version)) (sha256 (base32 - "0lsc201a4f6xksmsklhr6gmhl0mxih0xhlcdvhs2ypzcx1pvkpnv")))) + "08f3bdd5cnnbigybr9vmkhq12n64pbmn4layl3w5rwk8xi5kbnrq")))) (build-system r-build-system) (propagated-inputs `(("r-evaluate" ,r-evaluate) @@ -1606,20 +1604,22 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "2.2.1") + (version "2.3.0") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "0y0bvggm4pzkzp6xn7b8cf3ybqp9ijxkhhyp3z49a9iipc90bvk7")))) + "0qlajfgm3zjrmladwcm0xzw8zp2431zz2asa2w7lpg7zl6ymvz29")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) ("r-crayon" ,r-crayon) ("r-digest" ,r-digest) + ("r-ellipsis" ,r-ellipsis) ("r-evaluate" ,r-evaluate) ("r-magrittr" ,r-magrittr) + ("r-pkgload" ,r-pkgload) ("r-praise" ,r-praise) ("r-r6" ,r-r6) ("r-rlang" ,r-rlang) @@ -1634,13 +1634,13 @@ flexible and easy to set up.") (define-public r-r6 (package (name "r-r6") - (version "2.4.0") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "R6" version)) (sha256 (base32 - "1kmbw2k5vvzwh3wwmn66mszpfny0z6k8dca980qgbxgvfh0i3gkh")))) + "0gma5z41mx02ka9h96xdyf3p6i1rx0izczrzj26c4mbnh9jgvc16")))) (build-system r-build-system) (home-page "https://github.com/wch/R6/") (synopsis "Classes with reference semantics in R") @@ -1656,13 +1656,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "038mmbmklw17ncgz53vrdx2506c1jj6di3y165bbx2sl2yia8j4p")))) + "122hhc7pdri8wkjmk37y71m4h1gmdzaqcfdizfdjg1bhy935i10k")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1848,16 +1848,18 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.12.4") + (version "1.12.6") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "0zdcbr4nixvl8ga4mp9pw1dfww35dzhzpb6ixajqasiri824m7i9")))) + "1kgbnm5gv7ax7qn8irpz7qsry2ci21axga8y7qpkidcqkxkkndn2")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) + (native-inputs + `(("pkg-config" ,pkg-config))) (home-page "https://github.com/Rdatatable/data.table/wiki") (synopsis "Enhanced version of data.frame R object") (description @@ -2307,13 +2309,13 @@ tables, autolinks and strikethrough text.") (define-public r-roxygen2 (package (name "r-roxygen2") - (version "6.1.1") + (version "7.0.0") (source (origin (method url-fetch) (uri (cran-uri "roxygen2" version)) (sha256 (base32 - "0wq29ilqas8yn2z8v49fk0hbgchg29nmyyhwczgdipz0cbhbfipd")))) + "13sani3y9ql56cvja8pfjpwsbq8pismc52ns1cq1zgi0jycgqja5")))) (build-system r-build-system) (propagated-inputs `(("r-brew" ,r-brew) @@ -2324,6 +2326,7 @@ tables, autolinks and strikethrough text.") ("r-purrr" ,r-purrr) ("r-r6" ,r-r6) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-stringi" ,r-stringi) ("r-stringr" ,r-stringr) ("r-xml2" ,r-xml2))) @@ -2502,14 +2505,14 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "1v4cxfpvp85la4gqla6b4q2bwx4jv1fxqwndcnjsibbnybz6wcvd")))) + "0h24dsagn4kcr65arn73mpqapcg002kw4kyxfqyff95j6s6cjifl")))) (build-system r-build-system) (propagated-inputs `(("r-rlang" ,r-rlang) @@ -2610,13 +2613,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.9.700.2.0") + (version "0.9.800.1.0") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0g25w32dnqrvhnri8x4yxqawxd8qhn7w3m8d29nxxy0gybx3y8x9")))) + "1frg7y3fb571jf9dp1kkc75x0nxvw8j3qccsrm1brg5l1z2jmlaz")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) ;; All needed for vignettes @@ -2708,13 +2711,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "1.16") + (version "1.17") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "1p11g9lma604ndrhvyvriqxxp91lardc543nmvmr49n1m7309qvz")))) + (base32 "18dj6nr1m79pv1pv9w2n0rhiidwqjb2w8w1rnpcwijwbz4i8d3k2")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -3176,13 +3179,13 @@ using the multicore functionality of the parallel package.") (define-public r-dt (package (name "r-dt") - (version "0.9") + (version "0.10") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "17han4560jv8mmfn4f8adrwh0x25fxz2qwd0sv7vv4iky5and8a7")))) + "0vwhn1mcwv0hkbxnppf6vip23iiib0szvp1h3prawlkvd74xziiw")))) (properties `((upstream-name . "DT"))) (build-system r-build-system) @@ -3253,20 +3256,21 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "2.0-18") + (version "3.0") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 (base32 - "0sr5akaiaab1sdh9c8gfmc4kp9b4vqhd90d9ig0rqpqhp3bykp78")))) + "1fwspkxbsx7jy5h8zcdl0q8xsbj7svjjbcmg5lfpxdsgyyww46v7")))) (build-system r-build-system) - (inputs + (native-inputs `(("gfortran" ,gfortran))) (propagated-inputs `(("r-foreach" ,r-foreach) - ("r-matrix" ,r-matrix))) + ("r-matrix" ,r-matrix) + ("r-shape" ,r-shape))) (home-page "http://www.jstatsoft.org/v33/i01") (synopsis "Lasso and elastic-net regularized generalized linear models") (description @@ -3534,13 +3538,13 @@ want to migrate to S4.") (define-public r-r-oo (package (name "r-r-oo") - (version "1.22.0") + (version "1.23.0") (source (origin (method url-fetch) (uri (cran-uri "R.oo" version)) (sha256 (base32 - "0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0")))) + "189fb7mmyzwg6nn8rza8iip7fbyws7i2vkmzy672x9mhvgilq4pm")))) (properties `((upstream-name . "R.oo"))) (build-system r-build-system) (propagated-inputs @@ -3605,13 +3609,13 @@ persistent (on the file system).") (define-public r-r-rsp (package (name "r-r-rsp") - (version "0.43.1") + (version "0.43.2") (source (origin (method url-fetch) (uri (cran-uri "R.rsp" version)) (sha256 (base32 - "0i01p8jxc4j4zl2v2ykvvpfnm5hv650zj1wi1dh8hq0c98xi2yfr")))) + "128zqyvbq9hm9gy86jzhj609lkfw57vr24mdxgh46ncmx66ag4gj")))) (properties `((upstream-name . "R.rsp"))) (build-system r-build-system) (propagated-inputs @@ -3795,14 +3799,14 @@ and tidyr provides no margins or aggregation.") (define-public r-hexbin (package (name "r-hexbin") - (version "1.27.3") + (version "1.28.0") (source (origin (method url-fetch) (uri (cran-uri "hexbin" version)) (sha256 (base32 - "14f181lw6sj5xhfxbrpyyinsjfl0nzqilq6z80lgrhj2cnkj593y")))) + "0b58jb1kz39wzrnkv077cfzns889xly7psvhxnm3xmnx6yvd986d")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -3818,14 +3822,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.") (define-public r-purrr (package (name "r-purrr") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "purrr" version)) (sha256 (base32 - "0ccs78a2ylr60f3z0f7iywi8h1pwr8mz4ga78bs4pwgnwkclvir7")))) + "17lyys7dxjrwsfkq7a7hw65iy3qn3pp1sn70srdy64jf8adahc8g")))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) @@ -3840,13 +3844,13 @@ features present in other programming languages.") (define-public r-plotly (package (name "r-plotly") - (version "4.9.0") + (version "4.9.1") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "1kz2hm7vnkn4clxr6yyxxnmdmkz9zwjq6bzysw7j27r3721i8qgp")))) + "0gadam4qw81q9gpjp7sqrpd7ikmcdsc78d8vjn39g0xzs5j8r845")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -4043,14 +4047,13 @@ package instead.") (define-public r-hmisc (package (name "r-hmisc") - (version "4.2-0") + (version "4.3-0") (source (origin (method url-fetch) (uri (cran-uri "Hmisc" version)) (sha256 - (base32 - "1n8i2jhc308hd6bvys9cd7nrz7pwjszs03r5bwlh1pc869ki95ly")))) + (base32 "0rb1m6138lqzb46nss9ggvhghipd10vdnwsy6iq2wzynrynzkwkz")))) (properties `((upstream-name . "Hmisc"))) (build-system r-build-system) (native-inputs @@ -5155,14 +5158,13 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.51") + (version "5.52") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 - "1cdx51a9g6fjq2g9arr6wp6ghkyl2m6bs2dj4kcycvpn8p9304yz")))) + (base32 "0rq9as31wiz41lmi9hmdq3gknpcbpwqzfcn065ysjdxzjdb57dcy")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -5286,14 +5288,14 @@ Companion to Applied Regression, Third Edition, Sage.") (define-public r-car (package (name "r-car") - (version "3.0-3") + (version "3.0-4") (source (origin (method url-fetch) (uri (cran-uri "car" version)) (sha256 (base32 - "0vy3g3bjljd2al8xb9qr45f98is7yppc9jilqn7b6zvf5yqpr07s")))) + "1mhfxrb62yanaz36f4n38p9hhnqbs5b19k0864w4ja1ccgh3nl3f")))) (build-system r-build-system) (propagated-inputs `(("r-abind" ,r-abind) @@ -5733,16 +5735,16 @@ shaped points? Now you can!") (define-public r-colorout (package (name "r-colorout") - (version "1.2-0") + (version "1.2-2") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/jalvesaq/colorout/archive/" - "v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/jalvesaq/colorout.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 - "07vqx5ihgnq4dzn5jnfjfhdm3957v4prvf8vhnb3cwvlly4l7p9v")))) + (base32 "1rsx69wjpa73c6x2hacvvvbzdzxn7wg06gizf97kasjdlb7azmp3")))) (build-system r-build-system) (home-page "https://github.com/jalvesaq/colorout") (synopsis "Colorize output in the R REPL") |