diff options
Diffstat (limited to 'gnu/packages/statistics.scm')
| -rw-r--r-- | gnu/packages/statistics.scm | 150 |
1 files changed, 148 insertions, 2 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c84845dd29..45e50b651c 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -165,7 +165,9 @@ be output in text, PostScript, PDF or HTML.") ("which" ,which) ; for tests/Examples/base-Ex.R ("xz" ,xz))) (inputs - `(("cairo" ,cairo) + `(;; We need not only cairo here, but pango to ensure that tests for the + ;; "cairo" bitmapType plotting backend succeed. + ("pango" ,pango) ("curl" ,curl) ("tzdata" ,tzdata) ("gfortran" ,gfortran) @@ -596,7 +598,8 @@ legends.") ("r-plyr" ,r-plyr) ("r-proto" ,r-proto) ("r-reshape2" ,r-reshape2) - ("r-scales" ,r-scales))) + ("r-scales" ,r-scales) + ("r-svglite" ,r-svglite))) (home-page "http://ggplot2.org") (synopsis "An implementation of the grammar of graphics") (description @@ -608,6 +611,55 @@ multidimensional conditioning system and a consistent interface to map data to aesthetic attributes.") (license license:gpl2+))) +(define-public r-gdtools + (package + (name "r-gdtools") + (version "0.0.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "gdtools" version)) + (sha256 + (base32 + "1bmnf9d677f2jy8jnb9ymjz1qzm4yrd0qp6k5qrrly06jfffyx7g")))) + (build-system r-build-system) + (native-inputs + `(("r-rcpp" ,r-rcpp) + ("pkg-config" ,pkg-config))) + (inputs + `(("cairo" ,cairo))) + (home-page "http://cran.r-project.org/web/packages/gdtools") + (synopsis "Utilities for graphical rendering") + (description + "The @code{gdtools} package provides functionalities to get font metrics +and to generate base64 encoded string from raster matrix.") + (license license:gpl3))) + +(define-public r-svglite + (package + (name "r-svglite") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "svglite" version)) + (sha256 + (base32 + "11ryicjglfi6jvkk4jgg5kra42qbs5z2zid7jjhlslpjcljfwc70")))) + (build-system r-build-system) + (native-inputs `(("r-rcpp" ,r-rcpp))) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-gdtools" ,r-gdtools))) + (home-page "https://github.com/hadley/svglite") + (synopsis "SVG graphics device") + (description + "@code{svglite} is a graphics device that produces clean +@dfn{SVG} (Scalable Vector Graphics) output, suitable for use on the web, or +hand editing. Compared to the built-in @code{svg()}, @code{svglite} is +considerably faster, produces smaller files, and leaves text as is.") + (license license:gpl2+))) + (define-public r-assertthat (package (name "r-assertthat") @@ -1353,6 +1405,25 @@ diagnostic tests of convergence to the equilibrium distribution of the Markov chain.") (license license:gpl2+))) +(define-public r-ade4 + (package + (name "r-ade4") + (version "1.7-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "ade4" version)) + (sha256 + (base32 + "17sbicash7z4b63dlrbaf8xx2pbwh62vykzvhdjs43h8jkl881y7")))) + (build-system r-build-system) + (home-page "http://pbil.univ-lyon1.fr/ADE-4") + (synopsis "Multivariate data analysis and graphical display") + (description + "The ade4 package contains data analysis functions to analyze ecological +and environmental data in the framework of Euclidean exploratory methods.") + (license license:gpl2+))) + (define-public r-xml2 (package (name "r-xml2") @@ -1377,6 +1448,32 @@ chain.") files in R. It is built on top of the libxml2 C library.") (license license:gpl2+))) +(define-public r-multitaper + (package + (name "r-multitaper") + (version "1.0-11") + (source + (origin + (method url-fetch) + (uri (cran-uri "multitaper" version)) + (sha256 + (base32 + "1s0lmjzpyd7zmc2p1ywv5fm7qkq357p70b76gw9wjlms6d81j1n4")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran))) + (home-page "http://github.com/wesleyburr/multitaper/") + (synopsis "Multitaper spectral analysis tools") + (description + "This package implements multitaper spectral estimation +techniques using prolate spheroidal sequences (Slepians) and sine +tapers for time series analysis. It includes an adaptive weighted +multitaper spectral estimate, a coherence estimate, Thomson's Harmonic +F-test, and complex demodulation. The Slepians sequences are +generated efficiently using a tridiagonal matrix solution, and +jackknifed confidence intervals are available for most estimates.") + (license license:gpl2+))) + (define-public r-rversions (package (name "r-rversions") @@ -2170,6 +2267,29 @@ parallel.") using the parallel package.") (license license:gpl2+))) +(define-public r-domc + (package + (name "r-domc") + (version "1.3.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "doMC" version)) + (sha256 + (base32 + "0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn")))) + (properties `((upstream-name . "doMC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-foreach" ,r-foreach) + ("r-iterators" ,r-iterators))) + (home-page "http://cran.r-project.org/web/packages/doMC") + (synopsis "Foreach parallel adaptor for the 'parallel' package") + (description + "This package provides a parallel backend for the @code{%dopar%} function +using the multicore functionality of the parallel package.") + (license license:gpl2+))) + (define-public r-dt (package (name "r-dt") @@ -2242,6 +2362,32 @@ singular and eigenvalue decompositions, as well as for principal component analysis of large sparse or dense matrices.") (license (list license:gpl2+ license:gpl3+)))) +(define-public r-glmnet + (package + (name "r-glmnet") + (version "2.0-5") + (source + (origin + (method url-fetch) + (uri (cran-uri "glmnet" version)) + (sha256 + (base32 + "1cbpzmbv837fvq88rgn6mgzgr9f1wqp9fg8gh2kkmngvr1957a9c")))) + (build-system r-build-system) + (inputs + `(("gfortran" ,gfortran))) + (propagated-inputs + `(("r-foreach" ,r-foreach))) + (home-page "http://www.jstatsoft.org/v33/i01") + (synopsis "Lasso and elastic-net regularized generalized linear models") + (description + "The glmnet package provides efficient procedures for fitting the entire +lasso or elastic-net regularization path for linear and Poisson regression, as +well as logistic, multinomial, Cox, multiple-response Gaussian and grouped +multinomial models. The algorithm uses cyclical coordinate descent in a +path-wise fashion.") + (license license:gpl2+))) + (define-public r-pkgmaker (package (name "r-pkgmaker") |