diff options
Diffstat (limited to 'gnu/packages/patches')
| -rw-r--r-- | gnu/packages/patches/blender-2.79-newer-ffmpeg.patch | 80 | ||||
| -rw-r--r-- | gnu/packages/patches/blender-2.79-python-3.7-fix.patch | 43 | ||||
| -rw-r--r-- | gnu/packages/patches/cracklib-CVE-2016-6318.patch | 95 | ||||
| -rw-r--r-- | gnu/packages/patches/cracklib-fix-buffer-overflow.patch | 39 | ||||
| -rw-r--r-- | gnu/packages/patches/elixir-path-length.patch | 15 | ||||
| -rw-r--r-- | gnu/packages/patches/knot-include-system-lmdb-header.patch | 34 | ||||
| -rw-r--r-- | gnu/packages/patches/libextractor-CVE-2018-20430.patch | 60 | ||||
| -rw-r--r-- | gnu/packages/patches/libextractor-CVE-2018-20431.patch | 53 | ||||
| -rw-r--r-- | gnu/packages/patches/libgit2-oom-test.patch | 62 | ||||
| -rw-r--r-- | gnu/packages/patches/python-flint-includes.patch | 131 |
10 files changed, 303 insertions, 309 deletions
diff --git a/gnu/packages/patches/blender-2.79-newer-ffmpeg.patch b/gnu/packages/patches/blender-2.79-newer-ffmpeg.patch new file mode 100644 index 0000000000..363489bc70 --- /dev/null +++ b/gnu/packages/patches/blender-2.79-newer-ffmpeg.patch @@ -0,0 +1,80 @@ +https://sources.debian.org/data/main/b/blender/2.79.b+dfsg0-4/debian/patches/0008-fix_building_with_latest_versions_of_FFmpeg.patch + +From: Bastien Montagne <montagne29@wanadoo.fr> +Date: Tue, 8 May 2018 16:00:52 +0200 +Subject: fix_building_with_latest_versions_of_FFmpeg + +Some years-old deprecated stuff has now been removed. + +Correct solution is probably to use valid defines etc. in own code, but +this is more FFMEPG maintainer task (since it also may change how old +FFMPEG we do support...). +--- + intern/ffmpeg/ffmpeg_compat.h | 39 ++++++++++++++++++++++++++ + source/blender/blenkernel/intern/writeffmpeg.c | 3 +- + 2 files changed, 41 insertions(+), 1 deletion(-) + +diff --git a/intern/ffmpeg/ffmpeg_compat.h b/intern/ffmpeg/ffmpeg_compat.h +index 9c06c8a..f7f437c 100644 +--- a/intern/ffmpeg/ffmpeg_compat.h ++++ b/intern/ffmpeg/ffmpeg_compat.h +@@ -109,6 +109,45 @@ int av_sample_fmt_is_planar(enum AVSampleFormat sample_fmt) + + #endif + ++/* XXX TODO Probably fix to correct modern flags in code? Not sure how old FFMPEG we want to support though, ++ * so for now this will do. */ ++ ++#ifndef FF_MIN_BUFFER_SIZE ++# ifdef AV_INPUT_BUFFER_MIN_SIZE ++# define FF_MIN_BUFFER_SIZE AV_INPUT_BUFFER_MIN_SIZE ++# endif ++#endif ++ ++#ifndef FF_INPUT_BUFFER_PADDING_SIZE ++# ifdef AV_INPUT_BUFFER_PADDING_SIZE ++# define FF_INPUT_BUFFER_PADDING_SIZE AV_INPUT_BUFFER_PADDING_SIZE ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_GLOBAL_HEADER ++# ifdef AV_CODEC_FLAG_GLOBAL_HEADER ++# define CODEC_FLAG_GLOBAL_HEADER AV_CODEC_FLAG_GLOBAL_HEADER ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_GLOBAL_HEADER ++# ifdef AV_CODEC_FLAG_GLOBAL_HEADER ++# define CODEC_FLAG_GLOBAL_HEADER AV_CODEC_FLAG_GLOBAL_HEADER ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_INTERLACED_DCT ++# ifdef AV_CODEC_FLAG_INTERLACED_DCT ++# define CODEC_FLAG_INTERLACED_DCT AV_CODEC_FLAG_INTERLACED_DCT ++# endif ++#endif ++ ++#ifndef CODEC_FLAG_INTERLACED_ME ++# ifdef AV_CODEC_FLAG_INTERLACED_ME ++# define CODEC_FLAG_INTERLACED_ME AV_CODEC_FLAG_INTERLACED_ME ++# endif ++#endif ++ + /* FFmpeg upstream 1.0 is the first who added AV_ prefix. */ + #if LIBAVCODEC_VERSION_INT < AV_VERSION_INT(54, 59, 100) + # define AV_CODEC_ID_NONE CODEC_ID_NONE +diff --git a/source/blender/blenkernel/intern/writeffmpeg.c b/source/blender/blenkernel/intern/writeffmpeg.c +index a19e414..04d508a 100644 +--- a/source/blender/blenkernel/intern/writeffmpeg.c ++++ b/source/blender/blenkernel/intern/writeffmpeg.c +@@ -605,7 +605,8 @@ static AVStream *alloc_video_stream(FFMpegContext *context, RenderData *rd, int + c->rc_buffer_aggressivity = 1.0; + #endif + +- c->me_method = ME_EPZS; ++ /* Deprecated and not doing anything since July 2015, deleted in recent ffmpeg */ ++ //c->me_method = ME_EPZS; + + codec = avcodec_find_encoder(c->codec_id); + if (!codec) diff --git a/gnu/packages/patches/blender-2.79-python-3.7-fix.patch b/gnu/packages/patches/blender-2.79-python-3.7-fix.patch new file mode 100644 index 0000000000..fd1d8ba437 --- /dev/null +++ b/gnu/packages/patches/blender-2.79-python-3.7-fix.patch @@ -0,0 +1,43 @@ +Copied from https://git.blender.org/gitweb/gitweb.cgi/blender.git/patch/1db47a2ccd1e68994bf8140eba6cc2a26a2bc91f +Fixes <https://bugs.gnu.org/33608>. + +From 1db47a2ccd1e68994bf8140eba6cc2a26a2bc91f Mon Sep 17 00:00:00 2001 +From: Campbell Barton <ideasman42@gmail.com> +Date: Thu, 12 Jul 2018 08:28:06 +0200 +Subject: [PATCH] Fix PyRNA class registration w/ Python 3.7 + +In Python3.7 this now raises an error. +--- + source/blender/python/intern/bpy_rna.c | 5 +++++ + 1 file changed, 5 insertions(+) + +diff --git a/source/blender/python/intern/bpy_rna.c b/source/blender/python/intern/bpy_rna.c +index 9052b6f580a..80b0aa7a51b 100644 +--- a/source/blender/python/intern/bpy_rna.c ++++ b/source/blender/python/intern/bpy_rna.c +@@ -7577,10 +7577,12 @@ static int bpy_class_validate_recursive(PointerRNA *dummyptr, StructRNA *srna, v + if (!(flag & PROP_REGISTER)) + continue; + ++ /* TODO(campbell): Use Python3.7x _PyObject_LookupAttr(), also in the macro below. */ + identifier = RNA_property_identifier(prop); + item = PyObject_GetAttrString(py_class, identifier); + + if (item == NULL) { ++ PyErr_Clear(); + /* Sneaky workaround to use the class name as the bl_idname */ + + #define BPY_REPLACEMENT_STRING(rna_attr, py_attr) \ +@@ -7596,6 +7598,9 @@ static int bpy_class_validate_recursive(PointerRNA *dummyptr, StructRNA *srna, v + } \ + Py_DECREF(item); \ + } \ ++ else { \ ++ PyErr_Clear(); \ ++ } \ + } /* intentionally allow else here */ + + if (false) {} /* needed for macro */ +-- +2.20.1 + diff --git a/gnu/packages/patches/cracklib-CVE-2016-6318.patch b/gnu/packages/patches/cracklib-CVE-2016-6318.patch deleted file mode 100644 index 4806ecaae9..0000000000 --- a/gnu/packages/patches/cracklib-CVE-2016-6318.patch +++ /dev/null @@ -1,95 +0,0 @@ -Fix CVE-2016-6318. - -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2016-6318 - -Patch copied from Red Hat: - -https://bugzilla.redhat.com/show_bug.cgi?id=CVE-2016-6318 -https://bugzilla.redhat.com/attachment.cgi?id=1188599&action=diff - -It is not safe to pass words longer than STRINGSIZE further to cracklib -so the longbuffer cannot be longer than STRINGSIZE. -diff -up cracklib-2.9.0/lib/fascist.c.longgecos cracklib-2.9.0/lib/fascist.c ---- cracklib-2.9.0/lib/fascist.c.longgecos 2014-02-06 16:03:59.000000000 +0100 -+++ cracklib-2.9.0/lib/fascist.c 2016-08-08 12:05:40.279235815 +0200 -@@ -515,7 +515,7 @@ FascistGecosUser(char *password, const c - char gbuffer[STRINGSIZE]; - char tbuffer[STRINGSIZE]; - char *uwords[STRINGSIZE]; -- char longbuffer[STRINGSIZE * 2]; -+ char longbuffer[STRINGSIZE]; - - if (gecos == NULL) - gecos = ""; -@@ -596,38 +596,47 @@ FascistGecosUser(char *password, const c - { - for (i = 0; i < j; i++) - { -- strcpy(longbuffer, uwords[i]); -- strcat(longbuffer, uwords[j]); -- -- if (GTry(longbuffer, password)) -+ if (strlen(uwords[i]) + strlen(uwords[j]) < STRINGSIZE) - { -- return _("it is derived from your password entry"); -- } -- -- strcpy(longbuffer, uwords[j]); -- strcat(longbuffer, uwords[i]); -+ strcpy(longbuffer, uwords[i]); -+ strcat(longbuffer, uwords[j]); - -- if (GTry(longbuffer, password)) -- { -- return _("it's derived from your password entry"); -+ if (GTry(longbuffer, password)) -+ { -+ return _("it is derived from your password entry"); -+ } -+ -+ strcpy(longbuffer, uwords[j]); -+ strcat(longbuffer, uwords[i]); -+ -+ if (GTry(longbuffer, password)) -+ { -+ return _("it's derived from your password entry"); -+ } - } - -- longbuffer[0] = uwords[i][0]; -- longbuffer[1] = '\0'; -- strcat(longbuffer, uwords[j]); -- -- if (GTry(longbuffer, password)) -+ if (strlen(uwords[j]) < STRINGSIZE - 1) - { -- return _("it is derivable from your password entry"); -+ longbuffer[0] = uwords[i][0]; -+ longbuffer[1] = '\0'; -+ strcat(longbuffer, uwords[j]); -+ -+ if (GTry(longbuffer, password)) -+ { -+ return _("it is derivable from your password entry"); -+ } - } - -- longbuffer[0] = uwords[j][0]; -- longbuffer[1] = '\0'; -- strcat(longbuffer, uwords[i]); -- -- if (GTry(longbuffer, password)) -+ if (strlen(uwords[i]) < STRINGSIZE - 1) - { -- return _("it's derivable from your password entry"); -+ longbuffer[0] = uwords[j][0]; -+ longbuffer[1] = '\0'; -+ strcat(longbuffer, uwords[i]); -+ -+ if (GTry(longbuffer, password)) -+ { -+ return _("it's derivable from your password entry"); -+ } - } - } - } diff --git a/gnu/packages/patches/cracklib-fix-buffer-overflow.patch b/gnu/packages/patches/cracklib-fix-buffer-overflow.patch deleted file mode 100644 index b1c990f282..0000000000 --- a/gnu/packages/patches/cracklib-fix-buffer-overflow.patch +++ /dev/null @@ -1,39 +0,0 @@ -Fix buffer overflow processing long words in Mangle(). - -Patch adpated from upstream commit, omitting changes to 'NEWS': - -https://github.com/cracklib/cracklib/commit/33d7fa4585247cd2247a1ffa032ad245836c6edb - -From 33d7fa4585247cd2247a1ffa032ad245836c6edb Mon Sep 17 00:00:00 2001 -From: Jan Dittberner <jan@dittberner.info> -Date: Thu, 25 Aug 2016 17:17:53 +0200 -Subject: [PATCH] Fix a buffer overflow processing long words - -A buffer overflow processing long words has been discovered. This commit -applies the patch from -https://build.opensuse.org/package/view_file/Base:System/cracklib/0004-overflow-processing-long-words.patch -by Howard Guo. - -See https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=835386 and -http://www.openwall.com/lists/oss-security/2016/08/23/8 ---- - src/NEWS | 1 + - src/lib/rules.c | 5 ++--- - 2 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/src/lib/rules.c b/src/lib/rules.c -index d193cc0..3a2aa46 100644 ---- a/lib/rules.c -+++ b/lib/rules.c -@@ -434,9 +434,8 @@ Mangle(input, control) /* returns a pointer to a controlled Mangle */ - { - int limit; - register char *ptr; -- static char area[STRINGSIZE]; -- char area2[STRINGSIZE]; -- area[0] = '\0'; -+ static char area[STRINGSIZE * 2] = {0}; -+ char area2[STRINGSIZE * 2] = {0}; - strcpy(area, input); - - for (ptr = control; *ptr; ptr++) diff --git a/gnu/packages/patches/elixir-path-length.patch b/gnu/packages/patches/elixir-path-length.patch new file mode 100644 index 0000000000..aa8bf38829 --- /dev/null +++ b/gnu/packages/patches/elixir-path-length.patch @@ -0,0 +1,15 @@ +In the package definition the call to the command 'git' is substituted with +the full path to the git executable. This change causes the mix formatting tool +to complain that the line is too long. This workaround reformats the file +after the substitution is made. + +--- a/Makefile ++++ b/Makefile +@@ -213,6 +213,7 @@ + TEST_ERLS = $(addprefix $(TEST_EBIN)/, $(addsuffix .beam, $(basename $(notdir $(wildcard $(TEST_ERL)/*.erl))))) + + test_formatted: compile ++ bin/elixir bin/mix format lib/mix/lib/mix/scm/git.ex + bin/elixir bin/mix format --check-formatted + + test_erlang: compile $(TEST_ERLS) diff --git a/gnu/packages/patches/knot-include-system-lmdb-header.patch b/gnu/packages/patches/knot-include-system-lmdb-header.patch new file mode 100644 index 0000000000..5c5c0beabc --- /dev/null +++ b/gnu/packages/patches/knot-include-system-lmdb-header.patch @@ -0,0 +1,34 @@ +From: Tobias Geerinckx-Rice <me@tobias.gr> +Date: Wed, 20 Mar 2019 00:08:00 +0100 +Subject: [PATCH] gnu: knot: Include system <lmdb.h>. + +Copied verbatim from Knot master[0]. + +[0]: https://gitlab.labs.nic.cz/knot/knot-dns/commit/b557430cffbb1c6b30617a394b02acc514e7e536 + +From b557430cffbb1c6b30617a394b02acc514e7e536 Mon Sep 17 00:00:00 2001 +From: Daniel Salzman <daniel.salzman@nic.cz> +Date: Wed, 6 Mar 2019 17:35:44 +0100 +Subject: [PATCH] journal: include proper header <lmdb.h> + +fixes #638 +--- + src/knot/journal/knot_lmdb.h | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/knot/journal/knot_lmdb.h b/src/knot/journal/knot_lmdb.h +index 35a88845c..b1d09cbb4 100644 +--- a/src/knot/journal/knot_lmdb.h ++++ b/src/knot/journal/knot_lmdb.h +@@ -16,7 +16,7 @@ + + #pragma once + +-#include "contrib/lmdb/lmdb.h" ++#include <lmdb.h> + + #include <stdbool.h> + #include <stdlib.h> +-- +2.18.1 + diff --git a/gnu/packages/patches/libextractor-CVE-2018-20430.patch b/gnu/packages/patches/libextractor-CVE-2018-20430.patch deleted file mode 100644 index 570cd7c006..0000000000 --- a/gnu/packages/patches/libextractor-CVE-2018-20430.patch +++ /dev/null @@ -1,60 +0,0 @@ -Fix CVE-2018-20430: - -https://gnunet.org/bugs/view.php?id=5493 -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-20430 -https://security-tracker.debian.org/tracker/CVE-2018-20430 - -Patch copied from upstream source repository: - -https://gnunet.org/git/libextractor.git/commit/?id=b405d707b36e0654900cba78e89f49779efea110 - -From b405d707b36e0654900cba78e89f49779efea110 Mon Sep 17 00:00:00 2001 -From: Christian Grothoff <christian@grothoff.org> -Date: Thu, 20 Dec 2018 22:47:53 +0100 -Subject: [PATCH] fix #5493 (out of bounds read) - ---- - src/common/convert.c | 10 +++++----- - 1 file changed, 5 insertions(+), 5 deletions(-) - -diff --git a/src/common/convert.c b/src/common/convert.c -index c0edf21..2be2108 100644 ---- a/src/common/convert.c -+++ b/src/common/convert.c -@@ -36,8 +36,8 @@ - * string is returned. - */ - char * --EXTRACTOR_common_convert_to_utf8 (const char *input, -- size_t len, -+EXTRACTOR_common_convert_to_utf8 (const char *input, -+ size_t len, - const char *charset) - { - #if HAVE_ICONV -@@ -52,7 +52,7 @@ EXTRACTOR_common_convert_to_utf8 (const char *input, - i = input; - cd = iconv_open ("UTF-8", charset); - if (cd == (iconv_t) - 1) -- return strdup (i); -+ return strndup (i, len); - if (len > 1024 * 1024) - { - iconv_close (cd); -@@ -67,11 +67,11 @@ EXTRACTOR_common_convert_to_utf8 (const char *input, - } - itmp = tmp; - finSize = tmpSize; -- if (iconv (cd, (char **) &input, &len, &itmp, &finSize) == SIZE_MAX) -+ if (iconv (cd, (char **) &input, &len, &itmp, &finSize) == ((size_t) -1)) - { - iconv_close (cd); - free (tmp); -- return strdup (i); -+ return strndup (i, len); - } - ret = malloc (tmpSize - finSize + 1); - if (ret == NULL) --- -2.20.1 - diff --git a/gnu/packages/patches/libextractor-CVE-2018-20431.patch b/gnu/packages/patches/libextractor-CVE-2018-20431.patch deleted file mode 100644 index 855c5ba64b..0000000000 --- a/gnu/packages/patches/libextractor-CVE-2018-20431.patch +++ /dev/null @@ -1,53 +0,0 @@ -Fix CVE-2018-20431: - -https://gnunet.org/bugs/view.php?id=5494 -https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-20431 -https://security-tracker.debian.org/tracker/CVE-2018-20431 - -Patch copied from upstream source repository: - -https://gnunet.org/git/libextractor.git/commit/?id=489c4a540bb2c4744471441425b8932b97a153e7 - -To apply the patch to libextractor 1.8 release tarball, -hunk #1 which patches ChangeLog is removed. - -From 489c4a540bb2c4744471441425b8932b97a153e7 Mon Sep 17 00:00:00 2001 -From: Christian Grothoff <christian@grothoff.org> -Date: Thu, 20 Dec 2018 23:02:28 +0100 -Subject: [PATCH] fix #5494 - ---- - ChangeLog | 3 ++- - src/plugins/ole2_extractor.c | 9 +++++++-- - 2 files changed, 9 insertions(+), 3 deletions(-) - -diff --git a/src/plugins/ole2_extractor.c b/src/plugins/ole2_extractor.c -index 53fa1b9..a48b726 100644 ---- a/src/plugins/ole2_extractor.c -+++ b/src/plugins/ole2_extractor.c -@@ -173,7 +173,7 @@ struct ProcContext - EXTRACTOR_MetaDataProcessor proc; - - /** -- * Closure for 'proc'. -+ * Closure for @e proc. - */ - void *proc_cls; - -@@ -213,7 +213,12 @@ process_metadata (gpointer key, - - if (G_VALUE_TYPE(gval) == G_TYPE_STRING) - { -- contents = strdup (g_value_get_string (gval)); -+ const char *gvals; -+ -+ gvals = g_value_get_string (gval); -+ if (NULL == gvals) -+ return; -+ contents = strdup (gvals); - } - else - { --- -2.20.1 - diff --git a/gnu/packages/patches/libgit2-oom-test.patch b/gnu/packages/patches/libgit2-oom-test.patch deleted file mode 100644 index 9667d1c0da..0000000000 --- a/gnu/packages/patches/libgit2-oom-test.patch +++ /dev/null @@ -1,62 +0,0 @@ -Fix a test failure on 32-bit platforms as reported -at <https://github.com/libgit2/libgit2/issues/4868>. - -From 415a8ae9c9b6ac18f0524b6af8e58408b426457d Mon Sep 17 00:00:00 2001 -From: Edward Thomson <ethomson@edwardthomson.com> -Date: Thu, 13 Sep 2018 13:27:07 +0100 -Subject: [PATCH] tests: don't run buf::oom on 32-bit systems - -On a 32-bit Linux systems, the value large enough to make malloc -guarantee a failure is also large enough that valgrind considers it -"fishy". Skip this test on those systems entirely. ---- - tests/buf/oom.c | 14 +++++++++----- - 1 file changed, 9 insertions(+), 5 deletions(-) - -diff --git a/tests/buf/oom.c b/tests/buf/oom.c -index 2741a8ddf2..ec3bad9979 100644 ---- a/tests/buf/oom.c -+++ b/tests/buf/oom.c -@@ -11,12 +11,8 @@ - */ - #if defined(GIT_ARCH_64) && defined(__linux__) - # define TOOBIG 0x0fffffffffffffff --#elif defined(__linux__) --# define TOOBIG 0x0fffffff - #elif defined(GIT_ARCH_64) - # define TOOBIG 0xffffffffffffff00 --#else --# define TOOBIG 0xffffff00 - #endif - - /** -@@ -25,13 +21,18 @@ - * will fail. And because the git_buf_grow() wrapper always - * sets mark_oom, the code in git_buf_try_grow() will free - * the internal buffer and set it to git_buf__oom. -- * -+ * - * We initialized the internal buffer to (the static variable) - * git_buf__initbuf. The purpose of this test is to make sure - * that we don't try to free the static buffer. -+ * -+ * Skip this test entirely on 32-bit platforms; a buffer large enough -+ * to guarantee malloc failures is so large that valgrind considers -+ * it likely to be an error. - */ - void test_buf_oom__grow(void) - { -+#ifdef GIT_ARCH_64 - git_buf buf = GIT_BUF_INIT; - - git_buf_clear(&buf); -@@ -40,6 +41,9 @@ void test_buf_oom__grow(void) - cl_assert(git_buf_oom(&buf)); - - git_buf_free(&buf); -+#else -+ cl_skip(); -+#endif - } - - void test_buf_oom__grow_by(void) diff --git a/gnu/packages/patches/python-flint-includes.patch b/gnu/packages/patches/python-flint-includes.patch new file mode 100644 index 0000000000..c0cfe94a04 --- /dev/null +++ b/gnu/packages/patches/python-flint-includes.patch @@ -0,0 +1,131 @@ +The following patch, authored by Andreas Enge, looks for the flint include +files in the correct subdirectory. + +diff -u -r python-flint-old/src/flint.pxd python-flint-new/src/flint.pxd +--- python-flint-old/src/flint.pxd 2019-03-19 10:26:11.055748626 +0100 ++++ python-flint-new/src/flint.pxd 2019-03-19 10:35:23.269341203 +0100 +@@ -27,7 +27,7 @@ + + ctypedef long fmpz_struct + +-cdef extern from "flint.h": ++cdef extern from "flint/flint.h": + ctypedef void * flint_rand_t + void flint_randinit(flint_rand_t state) + void flint_randclear(flint_rand_t state) +@@ -35,7 +35,7 @@ + long flint_get_num_threads() + void flint_cleanup() + +-cdef extern from "nmod_vec.h": ++cdef extern from "flint/nmod_vec.h": + ctypedef struct nmod_t: + mp_limb_t n + mp_limb_t ninv +@@ -47,7 +47,7 @@ + mp_limb_t nmod_mul(mp_limb_t a, mp_limb_t b, nmod_t mod) + mp_limb_t nmod_div(mp_limb_t a, mp_limb_t b, nmod_t mod) + +-cdef extern from "nmod_poly.h": ++cdef extern from "flint/nmod_poly.h": + ctypedef struct nmod_poly_struct: + mp_ptr coeffs + long alloc +@@ -129,7 +129,7 @@ + void nmod_poly_factor_init(nmod_poly_factor_t fac) + void nmod_poly_factor_clear(nmod_poly_factor_t fac) + +-cdef extern from "nmod_mat.h": ++cdef extern from "flint/nmod_mat.h": + ctypedef struct nmod_mat_struct: + mp_limb_t * entries + long r +@@ -178,7 +178,7 @@ + long nmod_mat_rref(nmod_mat_t A) + long nmod_mat_nullspace(nmod_mat_t X, nmod_mat_t A) + +-cdef extern from "fmpz.h": ++cdef extern from "flint/fmpz.h": + ctypedef fmpz_struct fmpz_t[1] + int COEFF_IS_MPZ(fmpz_struct v) + void fmpz_init(fmpz_t op) +@@ -268,7 +268,7 @@ + void fmpz_rfac_uiui(fmpz_t r, ulong x, ulong n) + void fmpz_primorial(fmpz_t res, ulong n) + +-cdef extern from "fmpz_factor.h": ++cdef extern from "flint/fmpz_factor.h": + ctypedef struct fmpz_factor_struct: + int sign + fmpz_struct * p +@@ -280,7 +280,7 @@ + void fmpz_factor_clear(fmpz_factor_t factor) + void fmpz_factor(fmpz_factor_t factor, fmpz_t n) + +-cdef extern from "fmpz_poly.h": ++cdef extern from "flint/fmpz_poly.h": + ctypedef struct fmpz_poly_struct: + fmpz_struct * coeffs + long alloc +@@ -390,14 +390,14 @@ + void fmpz_poly_cos_minpoly(fmpz_poly_t, ulong) + void fmpz_poly_swinnerton_dyer(fmpz_poly_t, ulong) + +-cdef extern from "fmpz_poly_factor.h": ++cdef extern from "flint/fmpz_poly_factor.h": + void fmpz_poly_factor_init(fmpz_poly_factor_t fac) + void fmpz_poly_factor_clear(fmpz_poly_factor_t fac) + void fmpz_poly_factor_zassenhaus(fmpz_poly_factor_t fac, fmpz_poly_t G) + void fmpz_poly_factor(fmpz_poly_factor_t fac, fmpz_poly_t G) + void fmpz_poly_factor_squarefree(fmpz_poly_factor_t fac, fmpz_poly_t G) + +-cdef extern from "fmpz_mat.h": ++cdef extern from "flint/fmpz_mat.h": + ctypedef struct fmpz_mat_struct: + fmpz_struct * entries + long r +@@ -448,7 +448,7 @@ + void fmpz_mat_snf(fmpz_mat_t S, const fmpz_mat_t A) + int fmpz_mat_is_in_snf(const fmpz_mat_t A) + +-cdef extern from "fmpz_lll.h": ++cdef extern from "flint/fmpz_lll.h": + ctypedef struct fmpz_lll_struct: + double delta + double eta +@@ -461,7 +461,7 @@ + void fmpz_lll(fmpz_mat_t B, fmpz_mat_t U, const fmpz_lll_t fl) + + +-cdef extern from "fmpq.h": ++cdef extern from "flint/fmpq.h": + ctypedef struct fmpq_struct: + fmpz_struct num + fmpz_struct den +@@ -506,7 +506,7 @@ + void fmpq_next_signed_minimal(fmpq_t res, fmpq_t x) + void fmpq_harmonic_ui(fmpq_t res, ulong n) + +-cdef extern from "fmpq_poly.h": ++cdef extern from "flint/fmpq_poly.h": + ctypedef struct fmpq_poly_struct: + fmpz_struct * coeffs + fmpz_t den +@@ -620,7 +620,7 @@ + void fmpq_poly_compose_series(fmpq_poly_t res, fmpq_poly_t poly1, fmpq_poly_t poly2, long n) + void fmpq_poly_revert_series(fmpq_poly_t res, fmpq_poly_t poly1, long n) + +-cdef extern from "fmpq_mat.h": ++cdef extern from "flint/fmpq_mat.h": + ctypedef struct fmpq_mat_struct: + fmpq_struct * entries + long r +@@ -672,7 +672,7 @@ + long fmpq_mat_rref(fmpq_mat_t B, fmpq_mat_t A) + void fmpq_mat_transpose(fmpq_mat_t B, fmpq_mat_t A) + +-cdef extern from "arith.h": ++cdef extern from "flint/arith.h": + void arith_number_of_partitions(fmpz_t res, ulong n) + int arith_moebius_mu(fmpz_t n) + void arith_divisor_sigma(fmpz_t v, fmpz_t n, ulong k) |