diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 121 |
1 files changed, 42 insertions, 79 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 648cbfbac7..e2f3d84d09 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2298,20 +2298,18 @@ also provides threshold-based ILU factorization preconditioners.") (define-public superlu-dist (package (name "superlu-dist") - (version "5.3.0") + (version "6.1.0") (source (origin (method url-fetch) (uri (string-append "http://crd-legacy.lbl.gov/~xiaoye/SuperLU/" "superlu_dist_" version ".tar.gz")) (sha256 - (base32 "0ja5ihqivkda1wd58y4lmzvmwssm9g91f70c5q0fzwhng6580h6y")) + (base32 "0pqgcgh1yxhfzs99fas3mggajzd5wca3nbyp878rziy74gfk03dl")) (modules '((guix build utils))) (snippet ;; Replace the non-free implementation of MC64 with a stub '(begin - (use-modules (ice-9 regex) - (ice-9 rdelim)) (call-with-output-file "SRC/mc64ad_dist.c" (lambda (port) (display " @@ -2327,92 +2325,57 @@ void mc64ad_dist (int *a, int *b, int *c, int *d, int *e, double *f, int *g, abort (); }\n" port))) (substitute* "SRC/util.c" ;adjust default algorithm - (("RowPerm[[:blank:]]*=[[:blank:]]*LargeDiag") - "RowPerm = NOROWPERM")) + (("RowPerm[[:blank:]]*=[[:blank:]]*LargeDiag_MC64;") + ;; TODO: set to "LargeDiag_AWPM" once combinatorial-blas has + ;; general (i.e. non-square) processor-grid support. + "RowPerm = NOROWPERM;")) #t)) - (patches (search-patches "superlu-dist-scotchmetis.patch")))) - (build-system gnu-build-system) + (patches (search-patches "superlu-dist-scotchmetis.patch" + "superlu-dist-awpm-grid.patch")))) + (build-system cmake-build-system) (native-inputs `(("tcsh" ,tcsh))) (inputs - `(("gfortran" ,gfortran))) + `(("gfortran" ,gfortran) + ("blas" ,openblas) + ("lapack" ,lapack) + ("combblas" ,combinatorial-blas))) (propagated-inputs - `(("openmpi" ,openmpi) ;headers include MPI heades - ("lapack" ,lapack) ;required to link with output library - ("pt-scotch" ,pt-scotch))) ;same + `(("mpi" ,openmpi) ;headers include MPI heades + ("parmetis" ,pt-scotch32 "metis") + ("pt-scotch" ,pt-scotch32))) (arguments - `(#:parallel-build? #f ;race conditions using ar + `(#:parallel-tests? #f ;tests use MPI and OpenMP + #:configure-flags (list "-DBUILD_SHARED_LIBS:BOOL=YES" + "-DTPL_ENABLE_COMBBLASLIB=YES" + "-DTPL_BLAS_LIBRARIES=-lopenblas" + "-DTPL_LAPACK_LIBRARIES=-llapack" + (string-append "-DTPL_PARMETIS_LIBRARIES=" + (string-join + '("ptscotchparmetis" "ptscotch" "ptscotcherr" + "scotchmetis" "scotch" "scotcherr") + ";")) + (string-append "-DTPL_PARMETIS_INCLUDE_DIRS=" + (assoc-ref %build-inputs "parmetis") + "/include") + "-DTPL_ENABLE_COMBBLASLIB=ON" + (string-append "-DTPL_COMBBLAS_INCLUDE_DIRS=" + (assoc-ref %build-inputs "combblas") + "/include/CombBLAS;" + (assoc-ref %build-inputs "combblas") + "/include/BipartiteMatchings") + "-DTPL_COMBBLAS_LIBRARIES=CombBLAS") #:phases (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (call-with-output-file "make.inc" - (lambda (port) - (format port " -PLAT = -DSuperLUroot = ~a -DSUPERLULIB = ~a/lib/libsuperlu_dist.a -BLASDEF = -DUSE_VENDOR_BLAS -BLASLIB = -L~a/lib -lblas -PARMETISLIB = -L~a/lib \ - -lptscotchparmetis -lptscotch -lptscotcherr -lptscotcherrexit \ - -lscotch -lscotcherr -lscotcherrexit -METISLIB = -L~:*~a/lib \ - -lscotchmetis -lscotch -lscotcherr -lscotcherrexit -LIBS = $(DSUPERLULIB) $(PARMETISLIB) $(METISLIB) $(BLASLIB) -ARCH = ar -ARCHFLAGS = cr -RANLIB = ranlib -CC = mpicc -PIC = -fPIC -CFLAGS = -O3 -g -DPRNTlevel=0 $(PIC) -NOOPTS = -O0 -g $(PIC) -FORTRAN = mpifort -FFLAGS = -O2 -g $(PIC) -LOADER = $(CC) -CDEFS = -DAdd_" - (getcwd) - (assoc-ref outputs "out") - (assoc-ref inputs "lapack") - (assoc-ref inputs "pt-scotch")))) - #t)) - (add-after 'unpack 'remove-broken-symlinks + (add-before 'configure 'set-c++-standard (lambda _ - (for-each delete-file - (find-files "MAKE_INC" "\\.#make\\..*")) - #t)) - (add-before 'build 'create-install-directories - (lambda* (#:key outputs #:allow-other-keys) - (for-each - (lambda (dir) - (mkdir-p (string-append (assoc-ref outputs "out") - "/" dir))) - '("lib" "include")) - #t)) + (substitute* "CMakeLists.txt" + ;; AWPM headers require C++14 + (("CMAKE_CXX_STANDARD 11") "CMAKE_CXX_STANDARD 14")))) (add-before 'check 'mpi-setup ,%openmpi-setup) - (replace 'check - (lambda _ - (with-directory-excursion "EXAMPLE" - (invoke "mpirun" "-n" "2" - "./pddrive" "-r" "1" "-c" "2" "g20.rua") - (invoke "mpirun" "-n" "2" - "./pzdrive" "-r" "1" "-c" "2" "cg20.cua")) - #t)) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - ;; Library is placed in lib during the build phase. Copy over - ;; headers to include. - (let* ((out (assoc-ref outputs "out")) - (incdir (string-append out "/include"))) - (for-each (lambda (file) - (let ((base (basename file))) - (format #t "installing `~a' to `~a'~%" - base incdir) - (copy-file file - (string-append incdir "/" base)))) - (find-files "SRC" ".*\\.h$"))) - #t))))) + (add-before 'check 'omp-setup + (lambda _ (setenv "OMP_NUM_THREADS" "1") #t))))) (home-page (package-home-page superlu)) (synopsis "Parallel supernodal direct solver") (description |