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-rw-r--r--gnu/packages/maths.scm109
1 files changed, 56 insertions, 53 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index e432ed5c05..18b06e7765 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -227,14 +227,14 @@ semiconductors.")
(define-public gsl
(package
(name "gsl")
- (version "2.2.1")
+ (version "2.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/gsl/gsl-"
version ".tar.gz"))
(sha256
(base32
- "095hp01d8lkqdvv0p1k25kvbisgfdmvx1rzpyc2i8kl2n33kvlhk"))
+ "1yxdzqjwmi2aid650fa9zyr8llw069x7lm489wx9nnfdi6vh09an"))
(patches (search-patches "gsl-test-i686.patch"))))
(build-system gnu-build-system)
(arguments
@@ -425,40 +425,35 @@ singular value problems.")
"See LICENSE in the distribution."))))
(define-public gnuplot
- ;; Gnuplot version 5.0.4 was updated in-place, resulting in a hash mismatch.
- ;; This can be removed at the next version update.
- (let ((upstream-version "5.0.4")
- (guix-revision "1"))
- (package
- (name "gnuplot")
- (version (string-append upstream-version "-" guix-revision))
- (source
- (origin
- (method url-fetch)
- (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/"
- upstream-version "/gnuplot-"
- upstream-version ".tar.gz"))
- (sha256
- (base32
- "07n3w12dkcxjnhsvsliaqnkhajhi818v6q8mkpmpbplbf92vh70m"))))
- (build-system gnu-build-system)
- (inputs `(("readline" ,readline)
- ("cairo" ,cairo)
- ("pango" ,pango)
- ("gd" ,gd)))
- (native-inputs `(("pkg-config" ,pkg-config)
- ("texlive" ,texlive-minimal)))
- (home-page "http://www.gnuplot.info")
- (synopsis "Command-line driven graphing utility")
- (description "Gnuplot is a portable command-line driven graphing
+ (package
+ (name "gnuplot")
+ (version "5.0.5")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/"
+ version "/gnuplot-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0lr065qdlgss8lmy31l7hkmnk9fp4lvqq9qgb1f1209f36zy1wr5"))))
+ (build-system gnu-build-system)
+ (inputs `(("readline" ,readline)
+ ("cairo" ,cairo)
+ ("pango" ,pango)
+ ("gd" ,gd)))
+ (native-inputs `(("pkg-config" ,pkg-config)
+ ("texlive" ,texlive-minimal)))
+ (home-page "http://www.gnuplot.info")
+ (synopsis "Command-line driven graphing utility")
+ (description "Gnuplot is a portable command-line driven graphing
utility. It was originally created to allow scientists and students to
visualize mathematical functions and data interactively, but has grown to
support many non-interactive uses such as web scripting. It is also used as a
plotting engine by third-party applications like Octave.")
- ;; X11 Style with the additional restriction that derived works may only be
- ;; distributed as patches to the original.
- (license (license:fsf-free
- "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright")))))
+ ;; X11 Style with the additional restriction that derived works may only be
+ ;; distributed as patches to the original.
+ (license (license:fsf-free
+ "http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright"))))
(define-public gctp
(package
@@ -549,15 +544,20 @@ incompatible with HDF5.")
(define-public hdf5
(package
(name "hdf5")
- (version "1.8.17")
+ (version "1.8.18")
(source
(origin
(method url-fetch)
- (uri (string-append "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-"
- version "/src/hdf5-"
- version ".tar.bz2"))
+ (uri (list (string-append "http://www.hdfgroup.org/ftp/HDF5/releases/"
+ "hdf5-" version "/src/hdf5-"
+ version ".tar.bz2")
+ (string-append "https://support.hdfgroup.org/ftp/HDF5/"
+ "current"
+ (apply string-append
+ (take (string-split version #\.) 2))
+ "/src/hdf5-" version ".tar.bz2")))
(sha256
- (base32 "0sj8x0gfs5fb28gipnynb9wpkz113h8wq9sva9mxx66kv27xsdgw"))
+ (base32 "13542vrnl1p35n8vbq0wzk40vddmm33q5nh04j98c7r1yjnxxih1"))
(patches (list (search-patch "hdf5-config-date.patch")))))
(build-system gnu-build-system)
(inputs
@@ -709,7 +709,7 @@ HDF5 file is encoded according to the HDF File Format Specification.")
(define-public netcdf
(package
(name "netcdf")
- (version "4.4.0")
+ (version "4.4.1.1")
(source
(origin
(method url-fetch)
@@ -717,18 +717,21 @@ HDF5 file is encoded according to the HDF File Format Specification.")
"netcdf-" version ".tar.gz"))
(sha256
(base32
- "0y6gdcplarwqqnrav2xg1xd6ih732rzzbmdw78v3rl5b8mwcnh0d"))
- (patches (list (search-patch "netcdf-config-date.patch")))))
+ "1blc7ik5yin7i0ls2kag0a9xjk12m0dzx6v1x88az3ras3scci2d"))
+ (patches (search-patches "netcdf-date-time.patch"
+ "netcdf-tst_h_par.patch"))))
(build-system gnu-build-system)
(native-inputs
`(("m4" ,m4)
("doxygen" ,doxygen)
("graphviz" ,graphviz)))
(inputs
- `(("hdf5" ,hdf5)
- ("zlib" ,zlib)))
+ `(("hdf4" ,hdf4-alt)
+ ("hdf5" ,hdf5)
+ ("zlib" ,zlib)
+ ("libjpeg" ,libjpeg)))
(arguments
- `(#:configure-flags '("--enable-doxygen" "--enable-dot")
+ `(#:configure-flags '("--enable-doxygen" "--enable-dot" "--enable-hdf4")
#:parallel-tests? #f)) ;various race conditions
(home-page "http://www.unidata.ucar.edu/software/netcdf/")
(synopsis "Library for scientific data")
@@ -953,14 +956,14 @@ script files.")
(define-public gmsh
(package
(name "gmsh")
- (version "2.14.1")
+ (version "2.15.0")
(source
(origin
(method url-fetch)
(uri (string-append "http://gmsh.info/src/gmsh-"
version "-source.tgz"))
(sha256
- (base32 "1vsxp47j6srmy8kqb3p1z9pmlm42whhhz7r0vzpa2a86gga4zx17"))
+ (base32 "02h7fk4vv8qwnq3ymm409c5sp4nksd0m9h2vkxqmy42l0ic4nalr"))
(modules '((guix build utils)))
(snippet
;; Remove non-free METIS code
@@ -1851,7 +1854,7 @@ to BMP, JPEG or PNG image formats.")
(define-public maxima
(package
(name "maxima")
- (version "5.38.1")
+ (version "5.39.0")
(source
(origin
(method url-fetch)
@@ -1859,7 +1862,7 @@ to BMP, JPEG or PNG image formats.")
version "-source/" name "-" version ".tar.gz"))
(sha256
(base32
- "1p6646rvq43hk09msyp0dk50cqpkh07mf4x0bc2fqisqmcv6b1hf"))
+ "1cvignn5y6qzrby6qb885yc8zdcdqdr1d50vcvc3gapw2f0gk3zm"))
(patches (search-patches "maxima-defsystem-mkdir.patch"))))
(build-system gnu-build-system)
(inputs
@@ -1931,7 +1934,7 @@ point numbers.")
(define-public wxmaxima
(package
(name "wxmaxima")
- (version "16.04.2")
+ (version "16.12.0")
(source
(origin
(method url-fetch)
@@ -1939,7 +1942,7 @@ point numbers.")
version "/" name "-" version ".tar.gz"))
(sha256
(base32
- "1fpqzk1921isiqrpgpf433ldq41924qs9sy99fl1zn5661b2l73n"))))
+ "01kas9viqabw5id6crbhz8ahjimmv78gqzizs5hgnj9kngrgrm1h"))))
(build-system gnu-build-system)
(inputs
`(("wxwidgets" ,wxwidgets)
@@ -1989,14 +1992,14 @@ full text searching.")
(define-public armadillo
(package
(name "armadillo")
- (version "7.500.0")
+ (version "7.600.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/arma/armadillo-"
version ".tar.xz"))
(sha256
(base32
- "1x98d32cgxbzbbma2ak6c37wnbpq13xxyxyd6jjvflv748mzi9ks"))))
+ "0bac9y46m61zxinj51l82w06v01ra9vw7a9j6rrwdjhznkkdb437"))))
(build-system cmake-build-system)
(arguments `(#:tests? #f)) ;no test target
(inputs
@@ -2017,14 +2020,14 @@ associated functions (eg. contiguous and non-contiguous submatrix views).")
(define-public armadillo-for-rcpparmadillo
(package (inherit armadillo)
- (version "7.500.0")
+ (version "7.600.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/arma/armadillo-"
version ".tar.xz"))
(sha256
(base32
- "1x98d32cgxbzbbma2ak6c37wnbpq13xxyxyd6jjvflv748mzi9ks"))))))
+ "1dxgfd2r9lbh24nszvqm2lag439s0srxaf1l86f6ww6waqm5r8zk"))))))
(define-public muparser
;; When switching download sites, muparser re-issued a 2.2.5 release with a