diff options
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 121 |
1 files changed, 96 insertions, 25 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 125edbea40..4019c7efaf 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -8,7 +8,7 @@ ;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2015, 2018 Mark H Weaver <mhw@netris.org> -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016, 2018, 2020 Kei Kebreau <kkebreau@posteo.net> @@ -521,7 +521,7 @@ numbers.") (define-public sleef (package (name "sleef") - (version "3.4.1") + (version "3.5.1") (source (origin (method git-fetch) @@ -530,7 +530,7 @@ numbers.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1gvf7cfvszmgjrsqivwmyy1jnp3hy80dmszxx827lhjz8yqq5019")))) + (base32 "1jybqrl2dvjxzg30xrhh847s375n2jr1pix644wi6hb5wh5mx3f7")))) (build-system cmake-build-system) (arguments '(#:configure-flags (list "-DCMAKE_BUILD_TYPE=Release" @@ -565,7 +565,7 @@ It can utilize SIMD instructions that are available on modern processors.") (define-public glpk (package (name "glpk") - (version "4.65") + (version "5.0") (source (origin (method url-fetch) @@ -573,12 +573,13 @@ It can utilize SIMD instructions that are available on modern processors.") version ".tar.gz")) (sha256 (base32 - "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2")))) + "05bgxidxj8d9xdp82niy7cy36w181cxq7p8vc3y2ixshpgp1642a")))) (build-system gnu-build-system) (inputs `(("gmp" ,gmp))) (arguments - `(#:configure-flags '("--with-gmp"))) + `(#:configure-flags '("--with-gmp" + "--disable-static"))) (home-page "https://www.gnu.org/software/glpk/") (synopsis "GNU Linear Programming Kit, supporting the MathProg language") (description @@ -589,6 +590,20 @@ translator for the language. In addition to the C library, a stand-alone LP/MIP solver is included in the package.") (license license:gpl3+))) +(define-public glpk-4 + (package + (inherit glpk) + (name "glpk") + (version "4.65") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://gnu/glpk/glpk-" + version ".tar.gz")) + (sha256 + (base32 + "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2")))))) + (define-public 4ti2 (package (name "4ti2") @@ -1894,7 +1909,7 @@ can solve two kinds of problems: (define-public octave-cli (package (name "octave-cli") - (version "5.2.0") + (version "6.1.0") (source (origin (method url-fetch) @@ -1902,7 +1917,7 @@ can solve two kinds of problems: version ".tar.lz")) (sha256 (base32 - "1848dq6nxzal8gwjrcp6xhi5gq96w89nss9d9rz75q408gb3mbl6")))) + "0355s0pi8603ccs2j08zym3nalgalslxn83s37zq8nkrrkwxrjfk")))) (build-system gnu-build-system) (inputs `(("alsa-lib" ,alsa-lib) @@ -2214,13 +2229,13 @@ ASCII text files using Gmsh's own scripting language.") (define-public veusz (package (name "veusz") - (version "3.2.1") + (version "3.3.1") (source (origin (method url-fetch) (uri (pypi-uri "veusz" version)) (sha256 - (base32 "00vmfpvyd6f33l5awlf02qdik3gmbhzyfizfwwbx7qnam2i9bbwy")))) + (base32 "1q7hi1qwwg4pgiz62isvv1pia85m13bspdpp1q3mrnwl11in0ag0")))) (build-system python-build-system) (arguments `(;; Tests will fail because they depend on optional packages like @@ -2687,7 +2702,7 @@ bindings to almost all functions of SLEPc.") (define-public metamath (package (name "metamath") - (version "0.192") + (version "0.193") (source (origin (method git-fetch) @@ -2696,7 +2711,7 @@ bindings to almost all functions of SLEPc.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1k31zw36h2b0w5r6sbn9qc0v4hj42vw53qlhf5l7q2h3p5qlzvic")))) + (base32 "1s9hyknfvhj86g3giayyf3dxzg23iij0rs7bdvj075v9qbyhqn9b")))) (build-system gnu-build-system) (native-inputs `(("autoconf" ,autoconf) @@ -2978,18 +2993,21 @@ also provides threshold-based ILU factorization preconditioners.") (define-public superlu-dist (package (name "superlu-dist") - (version "6.2.0") + (version "6.4.0") (source (origin - (method url-fetch) - (uri (string-append "https://portal.nersc.gov/project/sparse/superlu/" - "superlu_dist_" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/xiaoyeli/superlu_dist") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "1ynmwqajc9sc3my2hssa5k9s58ggvizqv9rdss0j7w99pbh5mnvw")) + (base32 "0fa29yr72p4yq5ln4rgfsawmi5935n4qcr5niz6864bjladz4lql")) (modules '((guix build utils))) (snippet ;; Replace the non-free implementation of MC64 with a stub '(begin + (make-file-writable "SRC/mc64ad_dist.c") (call-with-output-file "SRC/mc64ad_dist.c" (lambda (port) (display " @@ -3067,14 +3085,14 @@ implemented in ANSI C, and MPI for communications.") (define-public scotch (package (name "scotch") - (version "6.0.6") + (version "6.1.0") (source (origin (method url-fetch) (uri (string-append "https://gforge.inria.fr/frs/download.php/" "latestfile/298/scotch_" version ".tar.gz")) (sha256 - (base32 "1ky4k9r6jvajhqaqnnx6h8fkmds2yxgp70dpr1qzwcyhi2nhqvv8")) + (base32 "1184fcv4wa2df8szb5lan6pjh0raarr45pk8ilpvbz23naikzg53")) (patches (search-patches "scotch-build-parallelism.patch" "scotch-integer-declarations.patch")))) (build-system gnu-build-system) @@ -3122,7 +3140,7 @@ YACC = bison -pscotchyy -y -b y "COMMON_PTHREAD" "COMMON_RANDOM_FIXED_SEED" "INTSIZE64" ;use 'int64_t' - ;; Prevents symbolc clashes with libesmumps + ;; Prevents symbol clashes with libesmumps "SCOTCH_RENAME" ;; XXX: Causes invalid frees in superlu-dist tests ;; "SCOTCH_PTHREAD" @@ -3914,7 +3932,8 @@ Fresnel integrals, and similar related functions as well.") " -DCMAKE_C_FLAGS_RELEASE=\"$(CFLAGS) $(CPPFLAGS)\"" " -DCMAKE_CXX_FLAGS_RELEASE=\"$(CXXFLAGS) $(CPPFLAGS)\"" " -DCMAKE_SKIP_RPATH=TRUE" - " -DCMAKE_BUILD_TYPE=Release") + " -DCMAKE_BUILD_TYPE=Release" + " -DCMAKE_INSTALL_LIBDIR=lib") (string-append "INSTALL_LIB=" (assoc-ref %outputs "out") "/lib") (string-append "INSTALL_INCLUDE=" @@ -4195,7 +4214,7 @@ revised simplex and the branch-and-bound methods.") (define-public dealii (package (name "dealii") - (version "9.1.1") + (version "9.2.0") (source (origin (method url-fetch) @@ -4203,7 +4222,7 @@ revised simplex and the branch-and-bound methods.") "download/v" version "/dealii-" version ".tar.gz")) (sha256 (base32 - "0xhjv0gzswpjbc43xbrpwfc5848g508l01855nszx3g5gwzlhnzw")) + "0fm4xzrnb7dfn4415j24d8v3jkh0lssi86250x2f5wgi83xq4nnh")) (modules '((guix build utils))) (snippet ;; Remove bundled sources: UMFPACK, TBB, muParser, and boost @@ -4538,7 +4557,7 @@ structured and unstructured grid problems."))) (define-public matio (package (name "matio") - (version "1.5.6") + (version "1.5.19") (source (origin (method url-fetch) @@ -4546,7 +4565,7 @@ structured and unstructured grid problems."))) "matio-" version ".tar.gz")) (sha256 (base32 - "0y2qymgxank8wdiwc68ap8bxdzrhvyw86i29yh3xgn4z1njfd9ir")))) + "0vr8c1mz1k6mz0sgh6n3scl5c3a71iqmy5fnydrgq504icj4vym4")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) @@ -4982,6 +5001,58 @@ be fed to @command{tcalc} through the command line.") (home-page "https://sites.google.com/site/mohammedisam2000/tcalc") (license license:gpl3+))) +(define-public tiny-bignum + (let ((commit "1d7a1f9b8e77316187a6b3eae8e68d60a6f9a4d4")) + (package + (name "tiny-bignum") + (version (git-version "0" "0" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kokke/tiny-bignum-c") + (commit commit))) + (file-name (git-file-name "tiny-bignum" commit)) + (sha256 + (base32 "0vj71qlhlaa7d92bfar1kwqv6582dqrby8x3kdw0yzh82k2023g6")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'patch-tests + (lambda _ + (substitute* "scripts/test_rand.py" + (("\t") " ") + (("\" % (\\w+)" _ symbol) (string-append "\" % int(" symbol ")"))) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "make" "test")) + #t)) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((share (string-append (assoc-ref outputs "out") "/share")) + (doc (string-append (assoc-ref outputs "out") "/doc"))) + (mkdir-p share) + (install-file "bn.c" share) + (install-file "bn.h" share) + (mkdir-p doc) + (install-file "LICENSE" doc) + (install-file "README.md" doc)) + #t))))) + (native-inputs + `(("python" ,python-wrapper))) + (home-page "https://github.com/kokke/tiny-bignum-c") + (synopsis "Small portable multiple-precision unsigned integer arithmetic in C") + (description + "This library provides portable Arbitrary-precision unsigned integer +arithmetic in C, for calculating with large numbers. Basic arithmetic (+, -, +*, /, %) and bitwise operations (&, |, ^. <<, >>) plus increments, decrements +and comparisons are supported.") + (license license:unlicense)))) + (define-public sundials (package (name "sundials") |