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-rw-r--r--gnu/packages/machine-learning.scm39
1 files changed, 11 insertions, 28 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index a7df9dce06..5fb375c98c 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -334,13 +334,15 @@ algorithm.")
(uri (string-append
"https://www.imbs.uni-luebeck.de/fileadmin/files/Software"
"/randomjungle/randomjungle-" version ".tar_.gz"))
+ (patches (search-patches "randomjungle-disable-static-build.patch"))
(sha256
(base32
"12c8rf30cla71swx2mf4ww9mfd8jbdw5lnxd7dxhyw1ygrvg6y4w"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
- (list (string-append "--with-boost="
+ (list "--disable-static"
+ (string-append "--with-boost="
(assoc-ref %build-inputs "boost")))
#:phases
(modify-phases %standard-phases
@@ -707,7 +709,7 @@ computing environments.")
(define-public python-scikit-learn
(package
(name "python-scikit-learn")
- (version "0.19.2")
+ (version "0.20.1")
(source
(origin
(method git-fetch)
@@ -717,9 +719,7 @@ computing environments.")
(file-name (git-file-name name version))
(sha256
(base32
- "1dk9hdj01c0bny4ps78b7869fjw9gr6qklxf6wyql8h6nh4k19xm"))
- (patches (search-patches
- "python-scikit-learn-fix-test-non-determinism.patch"))))
+ "0qv7ir1fy9vjar3llc72yxmfja3gxm5icdf0y3q57vsn3wcdglkz"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -730,11 +730,11 @@ computing environments.")
(lambda _
;; Restrict OpenBLAS threads to prevent segfaults while testing!
(setenv "OPENBLAS_NUM_THREADS" "1")
- ;; Disable tests that require network access
- (delete-file "sklearn/datasets/tests/test_mldata.py")
- (delete-file "sklearn/datasets/tests/test_rcv1.py")
- (invoke "pytest" "sklearn")
- #t))
+
+ ;; Some tests require write access to $HOME.
+ (setenv "HOME" "/tmp")
+
+ (invoke "pytest" "sklearn" "-m" "not network")))
;; FIXME: This fails with permission denied
(delete 'reset-gzip-timestamps))))
(inputs
@@ -754,24 +754,7 @@ data analysis.")
(license license:bsd-3)))
(define-public python2-scikit-learn
- (let ((parent (package-with-python2 python-scikit-learn)))
- (package (inherit parent)
- (arguments
- (substitute-keyword-arguments (package-arguments parent)
- ((#:phases phases)
- `(modify-phases ,phases
- (replace 'check
- (lambda _
- ;; Restrict OpenBLAS threads to prevent segfaults while testing!
- (setenv "OPENBLAS_NUM_THREADS" "1")
- ;; Some tests expect to be able to write to HOME.
- (setenv "HOME" "/tmp")
- ;; Disable tests that require network access
- (delete-file "sklearn/datasets/tests/test_kddcup99.py")
- (delete-file "sklearn/datasets/tests/test_mldata.py")
- (delete-file "sklearn/datasets/tests/test_rcv1.py")
- (invoke "pytest" "sklearn")
- #t)))))))))
+ (package-with-python2 python-scikit-learn))
(define-public python-autograd
(let* ((commit "442205dfefe407beffb33550846434baa90c4de7")