diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 150 |
1 files changed, 145 insertions, 5 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 975884e881..b71906a8f5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2018 Laura Lazzati <laura.lazzati.15@gmail.com> ;;; Copyright © 2018 Leo Famulari <leo@famulari.name> ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com> +;;; Copyright © 2018 Brett Gilio <brettg@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -2251,14 +2252,14 @@ available in a vignette.") (define-public r-lava (package (name "r-lava") - (version "1.6.4") + (version "1.6.5") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "0627cjlg55kzbzcy82w6wykmw2i57qhgfcabn2zy3ydfdswyxij1")))) + "13rlqdg42ylnz4hc932bl50xismrcr4d9ykcd9zs19cw5mckjx0f")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) @@ -6589,19 +6590,19 @@ used to teach mathematics, statistics, computation and modeling.") (define-public r-raster (package (name "r-raster") - (version "2.8-4") + (version "2.8-19") (source (origin (method url-fetch) (uri (cran-uri "raster" version)) (sha256 (base32 - "14pcfznxm5kdwd908axkr9v1l0hzxlrwd8kwrz0liqnfh9cx5rsa")))) + "1lmhf7p7is8ai7lv7zsj2rdzf83j7ccl4x7a9vwxxa824zy4bkf4")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) ("r-sp" ,r-sp))) - (home-page "http://www.rspatial.org/") + (home-page "https://www.rspatial.org/") (synopsis "Geographic data analysis and modeling") (description "The package implements basic and high-level functions for reading, @@ -10511,3 +10512,142 @@ tempering (function @code{temper}), and morphometric random walk Metropolis (function @code{morph.metrop}), which achieves geometric ergodicity by change of variable.") (license license:expat))) + +(define-public r-listenv + (package + (name "r-listenv") + (version "0.7.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "listenv" version)) + (sha256 + (base32 + "0ma5jsri2zqkrlsm9nqpikl7imbwfy1glsmk13mblw0q245h49k1")))) + (build-system r-build-system) + (native-inputs + `(("r-r-rsp" ,r-r-rsp))) ; vignette builder + (home-page "https://github.com/HenrikBengtsson/listenv") + (synopsis "Environments behaving (almost) as lists") + (description + "This package implements list environments. List environments are +environments that have list-like properties. For instance, the elements of a +list environment are ordered and can be accessed and iterated over using index +subsetting.") + (license license:lgpl2.1+))) + +(define-public r-globals + (package + (name "r-globals") + (version "0.12.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "globals" version)) + (sha256 + (base32 + "0szyv1ayyk31bh3xqlkj43020w44xq6s4rw2bxwizyjssxm3b1br")))) + (build-system r-build-system) + (propagated-inputs + `(("r-codetools" ,r-codetools))) + (home-page "https://github.com/HenrikBengtsson/globals") + (synopsis "Identify global objects in R expressions") + (description + "This package provides tools to identify global (\"unknown\" or \"free\") +objects in R expressions by code inspection using various strategies, e.g. +conservative or liberal. The objective of this package is to make it as +simple as possible to identify global objects for the purpose of exporting +them in distributed compute environments.") + (license license:lgpl2.1+))) + +(define-public r-future + (package + (name "r-future") + (version "1.11.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "future" version)) + (sha256 + (base32 + "1s4lyqg4mm1drzc6czaalmhmxfjgp4nznb14ql5xzny9rprgz43i")))) + (build-system r-build-system) + (propagated-inputs + `(("r-digest" ,r-digest) + ("r-globals" ,r-globals) + ("r-listenv" ,r-listenv))) + (native-inputs + `(("r-r-rsp" ,r-r-rsp))) ; vignette builder + (home-page "https://github.com/HenrikBengtsson/future") + (synopsis "Unified parallel and distributed processing in R") + (description + "The purpose of this package is to provide a lightweight and unified +Future API for sequential and parallel processing of R expression via futures. +This package implements sequential, multicore, multisession, and cluster +futures. With these, R expressions can be evaluated on the local machine, in +parallel a set of local machines, or distributed on a mix of local and remote +machines. Extensions to this package implement additional backends for +processing futures via compute cluster schedulers etc. Because of its unified +API, there is no need to modify any code in order to switch from sequential on +the local machine to, say, distributed processing on a remote compute cluster.") + (license license:lgpl2.1+))) + +(define-public r-future-apply + (package + (name "r-future-apply") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "future.apply" version)) + (sha256 + (base32 + "0b6v9rxvnnz13sydbgkapw71hx98fwdczjchgqnspjmq2340kdc0")))) + (properties `((upstream-name . "future.apply"))) + (build-system r-build-system) + (propagated-inputs + `(("r-future" ,r-future) + ("r-globals" ,r-globals))) + (native-inputs + `(("r-r-rsp" ,r-r-rsp))) ; vignette builder + (home-page "https://github.com/HenrikBengtsson/future.apply") + (synopsis "Apply function to elements in parallel using futures") + (description + "This package provides implementations of @code{apply()}, +@code{eapply()}, @code{lapply()}, @code{Map()}, @code{mapply()}, +@code{replicate()}, @code{sapply()}, @code{tapply()}, and @code{vapply()} that +can be resolved using any future-supported backend, e.g. parallel on the local +machine or distributed on a compute cluster.") + (license license:gpl2+))) + +(define-public r-rsvd + (package + (name "r-rsvd") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rsvd" version)) + (sha256 + (base32 + "0vjhrvnkl9rmvl8sv2kac5sd10z3fgxymb676ynxzc2pmhydy3an")))) + (build-system r-build-system) + (propagated-inputs + `(("r-matrix" ,r-matrix))) + (home-page "https://github.com/erichson/rSVD") + (synopsis "Randomized singular value decomposition") + (description + "Low-rank matrix decompositions are fundamental tools and widely used for +data analysis, dimension reduction, and data compression. Classically, highly +accurate deterministic matrix algorithms are used for this task. However, the +emergence of large-scale data has severely challenged our computational +ability to analyze big data. The concept of randomness has been demonstrated +as an effective strategy to quickly produce approximate answers to familiar +problems such as the @dfn{singular value decomposition} (SVD). This package +provides several randomized matrix algorithms such as the randomized singular +value decomposition (@code{rsvd}), randomized principal component +analysis (@code{rpca}), randomized robust principal component +analysis (@code{rrpca}), randomized interpolative decomposition (@code{rid}), +and the randomized CUR decomposition (@code{rcur}). In addition several plot +functions are provided.") + (license license:gpl3+))) |