diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 337 |
1 files changed, 195 insertions, 142 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3bd0d664da..17c85fe512 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -78,14 +78,14 @@ (define-public r-clipr (package (name "r-clipr") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "clipr" version)) (sha256 (base32 - "0k9kimkmmj9k7290sxiqn4kd1vvm4w7q9a44wp0w30b7yjpavx2m")))) + "1qn2p13d0c1bpqss6mv9hk60980rzhznfqpyaf5x0fy65svy9903")))) (build-system r-build-system) (home-page "https://github.com/mdlincoln/clipr") (synopsis "Read and write from the system clipboard") @@ -97,14 +97,14 @@ the system clipboards.") (define-public r-ellipsis (package (name "r-ellipsis") - (version "0.2.0") + (version "0.2.0.1") (source (origin (method url-fetch) (uri (cran-uri "ellipsis" version)) (sha256 (base32 - "0hdk79q4wn5nq52p8qd65kqz81l0b8gfzsbzyvmfais0p24qclib")))) + "0hx9l043433bwm1np9sypph77c7y9dddpz0wrhbkcv01x32jhr8f")))) (build-system r-build-system) (propagated-inputs `(("r-rlang" ,r-rlang))) @@ -370,14 +370,14 @@ such as copy/paste from an R session.") (define-public r-callr (package (name "r-callr") - (version "3.2.0") + (version "3.3.1") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "1s5h2k7c1vgbry90xczin66q89cbkc6mvh4679l5rsz83087pd2b")))) + "0rvrlg86fxr5nadvqa0dr1iifqjs4d1rc32v76m3ccvx6m3xlq5z")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) @@ -420,21 +420,21 @@ the embedded @code{RapidXML} C++ library.") (define-public r-modelr (package (name "r-modelr") - (version "0.1.4") + (version "0.1.5") (source (origin (method url-fetch) (uri (cran-uri "modelr" version)) (sha256 (base32 - "1ngxphbjkv7yl1rg30sj36mfwhc76g452drjrq9abgab4k0pgnml")))) + "0nnfhlzz75ihs8azy963cc4cwg1kx81rybk4z3wm98bbghwfxfs5")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) ("r-dplyr" ,r-dplyr) - ("r-lazyeval" ,r-lazyeval) ("r-magrittr" ,r-magrittr) ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr))) (home-page "https://github.com/tidyverse/modelr") @@ -500,13 +500,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "0zjjnfgas9d16fihksyk24kgkkqswb4sd0rz51id2ni1ymdyasjk")))) + "199k9aghwk9rf1rm8pjg60xacqww25cza259h5dfj1ixil0m6dxi")))) (build-system r-build-system) (propagated-inputs `(("r-httpuv" ,r-httpuv) @@ -614,13 +614,13 @@ LaTeX.") (define-public r-curl (package (name "r-curl") - (version "3.3") + (version "4.0") (source (origin (method url-fetch) (uri (cran-uri "curl" version)) (sha256 (base32 - "1gd5i25anzi28lg1f8p7g63z9d46xi0qaw4lxpml5p0f52lvkc0c")))) + "0wb1j87fa2nd4a9x1w2nmc453nzvx6qiq8dviwc4jr36hsf9ra89")))) (build-system r-build-system) (arguments `(#:phases @@ -1205,14 +1205,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "0x5fwc4q2gdxwwp5sxdd6q17jhpisd769y9kv0xgnjcm0cdwz8f0")))) + "12h64r2v2451igyl7v4w2kg0hzw9rnanph0m7smffq29ybkv9g4h")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -1441,14 +1441,14 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.0.3") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 (base32 - "0k8zwa66rm1ncx19ld5mbaxcjxkswiczpdqyssy44vl8k6scwfn9")))) + "0prvx91dha5pvd0k4jca2arkngvi6vnfs2indmiy3kwwzyjyyd19")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -1497,13 +1497,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "015rmxns8mhmnd9wnz9bmma4iwx2sf4bcwkkp9hcgvdmblzf0vg7")))) + (base32 "170jlmjrs92z5qdv58badhxycjvfjpqwwpic7rm13pc9zkb3i4xd")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -2230,14 +2230,14 @@ topics for ecologists (ISBN 978-0-691-12522-0).") (define-public r-lpsolve (package (name "r-lpsolve") - (version "5.6.13.1") + (version "5.6.13.2") (source (origin (method url-fetch) (uri (cran-uri "lpSolve" version)) (sha256 (base32 - "1f10ywlaaldgjj84vs108ly0nsbkrdgbn5d6qj7nk93j1x1xrn3a")))) + "0fc5m259ayc880f5hvnq59ih6nb2rlp394n756n1khmxbjpw1w3m")))) (properties `((upstream-name . "lpSolve"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/lpSolve") @@ -2315,14 +2315,14 @@ data). Weighted versions of MLE, MME and QME are available.") (define-public r-energy (package (name "r-energy") - (version "1.7-5") + (version "1.7-6") (source (origin (method url-fetch) (uri (cran-uri "energy" version)) (sha256 (base32 - "15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4")))) + "16m8bxfgr9sdisjy2qrv6fv5xxwcc9q890l0hpbwq6qzisrdn3lh")))) (build-system r-build-system) (propagated-inputs `(("r-boot" ,r-boot) @@ -2450,14 +2450,14 @@ available in a vignette.") (define-public r-lava (package (name "r-lava") - (version "1.6.5") + (version "1.6.6") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "13rlqdg42ylnz4hc932bl50xismrcr4d9ykcd9zs19cw5mckjx0f")))) + "0nfab5fgnmxh8cplg8rd8cp34fny5j0k5wn4baj51r6ck7fq9g3s")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) @@ -2640,20 +2640,41 @@ to access PostgreSQL database systems.") ;; under the PostgreSQL license. (license license:gpl2))) +(define-public r-linprog + (package + (name "r-linprog") + (version "0.9-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "linprog" version)) + (sha256 + (base32 + "1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9")))) + (build-system r-build-system) + (propagated-inputs `(("r-lpsolve" ,r-lpsolve))) + (home-page "http://linprog.r-forge.r-project.org/") + (synopsis "Linear programming and optimization") + (description + "This package can be used to solve Linear Programming / Linear +Optimization problems by using the simplex algorithm.") + (license license:gpl2+))) + (define-public r-geometry (package (name "r-geometry") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "geometry" version)) (sha256 (base32 - "0v3ivaw8vbjyxg08dd573qk3kqfyknj5hli9503dza6p6xz0dzmm")))) + "0vq334115qi039vy198ggv1dsp6n1s6jwcm9ivipf5r8lbm287zz")))) (build-system r-build-system) (propagated-inputs `(("r-magic" ,r-magic) + ("r-linprog" ,r-linprog) ("r-lpsolve" ,r-lpsolve) ("r-rcpp" ,r-rcpp) ("r-rcppprogress" ,r-rcppprogress))) @@ -2871,14 +2892,14 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.5") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "056zv4vhayyy8q9izcdknbb9hff2gxivg21g5mkssia78vw8g3mg")))) + "1ndz9h0zvdj141r63l8047wbhaj0x8fwzzyq7b8mh78pvrrdpq2i")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -2890,7 +2911,6 @@ provides a one-row summary of model-level statistics.") ("r-magrittr" ,r-magrittr) ("r-matrix" ,r-matrix) ("r-purrr" ,r-purrr) - ("r-rcpproll" ,r-rcpproll) ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) @@ -3056,14 +3076,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.") (define-public r-jomo (package (name "r-jomo") - (version "2.6-8") + (version "2.6-9") (source (origin (method url-fetch) (uri (cran-uri "jomo" version)) (sha256 (base32 - "097zfdcqc3a45ay8xxbraqh8xsfyivskkdmc2b4ca4n979lx8vyb")))) + "16ychdhhv8cii8zrdfdf5gzgnvmfaq573bmi00xqdf323q3lf3xr")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4) @@ -3129,14 +3149,14 @@ analysis of multiply imputed data sets.") (define-public r-mice (package (name "r-mice") - (version "3.5.0") + (version "3.6.0") (source (origin (method url-fetch) (uri (cran-uri "mice" version)) (sha256 (base32 - "0icydc312sbvzbp0r0mhs2r77a2ly2xvz5w5amirz3wdkvgyrk2g")))) + "0pgcxdmp77604h6f4x8hhs6j4xdjgf5b9zvnixyzdj8vcgdjpivv")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) @@ -3212,14 +3232,14 @@ programming} (SQP) based solver).") (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "15i7b444hikkfgqmx2ki827998xwra38k9v7a7kavwz6zmq5mmv9")))) + "1irz44q6nf95h37av868f47aakwv3jgwgw217xfsfw0afkm7s25f")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs @@ -3289,14 +3309,14 @@ structure.") (define-public r-vioplot (package (name "r-vioplot") - (version "0.3.0") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "vioplot" version)) (sha256 (base32 - "1ddmmqq7qrnvr5q518afnysrl7ccr8am9njknv3dpwaqzcdr9akn")))) + "13kfjp747bnzksai8j39y2hyl3ljc6n53c2cfhaw78q3d63x0lbv")))) (build-system r-build-system) (propagated-inputs `(("r-sm" ,r-sm) @@ -3631,14 +3651,14 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.3.1") + (version "3.4.1") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 (base32 - "1bhbfacx2z2d97pz5bch45nvbvywhx2zp049czlfbdivkzgxn8v1")))) + "1g6ipcaxg9y94lyrnbp7kkbqfkcdh1fyrqjjclbjp3x7iysdvazi")))) (build-system r-build-system) (propagated-inputs `(("r-ps" ,r-ps) @@ -3839,18 +3859,19 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "13w1r8zpalirpfaz5sykpn0mj4jmhxi2qkdcfq081ixlfjyzwa6c")))) + "05h0y8qzwc899qj84gkhg4jwzscd065as00d4d8smv42h4i8zkjv")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) ("r-digest" ,r-digest) + ("r-ellipsis" ,r-ellipsis) ("r-glue" ,r-glue) ("r-rlang" ,r-rlang) ("r-zeallot" ,r-zeallot))) @@ -3877,14 +3898,14 @@ to variables on the left-hand side of the assignment.") (define-public r-pillar (package (name "r-pillar") - (version "1.4.1") + (version "1.4.2") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "0mcc09caxm69pghhz6b8vawj9ni63aijv5qba53pg4ph7rxclwgm")))) + "0988047mf0xdhdkqqmavzx4ifjhndjnxniyrrhrdq1nvnrvbpfms")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -3923,14 +3944,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "0aab7ybc6kkxxk3lzdmbla8zcpp6nmlahchc33miv28cmnqw363w")))) + "145dmgq7h55mmqqlnnj153j484x2a9s1fbvjbjkdyqzpnz9qh2ax")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -4628,14 +4649,14 @@ files.") (define-public r-shinyace (package (name "r-shinyace") - (version "0.3.3") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "shinyAce" version)) (sha256 (base32 - "02q6wqw349nlyf3mbf18cxif1xv9cal5qzccrdlnv73szqn9jk7j")))) + "0hvih5g0pswlnz5rf3blx5yqw11ssxvm8w4klxddp1ap20ncbgl1")))) (properties `((upstream-name . "shinyAce"))) (build-system r-build-system) (propagated-inputs @@ -4678,14 +4699,14 @@ systems.") (define-public r-radiant-data (package (name "r-radiant-data") - (version "0.9.9") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "radiant.data" version)) (sha256 (base32 - "17mgm0sggh4f7ihqmj9m3996p3pqc7h2cwx6ll1ha3kg5mx0znyn")) + "0b35jn4mcj10hqra18l8pi6s4pvj6fxipslbn6hkr4zza1z27gzw")) (modules '((guix build utils))) (snippet '(begin @@ -5140,14 +5161,14 @@ misclassification probabilities of different models.") (define-public r-zip (package (name "r-zip") - (version "2.0.2") + (version "2.0.3") (source (origin (method url-fetch) (uri (cran-uri "zip" version)) (sha256 (base32 - "1xvgs7mhxi0sdp5ix4nisqm9lf8f75b7ip7b1hqpq9bzh0x6z8ix")))) + "0zii05jg9v9ljd0wd67g9x4bhlmpmsy5dzd093sbnc5n3vjbi32a")))) (build-system r-build-system) (home-page "https://github.com/gaborcsardi/zip") (synopsis "Cross-platform Zip compression") @@ -5298,14 +5319,14 @@ promises, but with a syntax that is idiomatic R.") (define-public r-dosnow (package (name "r-dosnow") - (version "1.0.16") + (version "1.0.18") (source (origin (method url-fetch) (uri (cran-uri "doSNOW" version)) (sha256 (base32 - "13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n")))) + "0rj72z5505cprh6wykhhiz08l9bmd966srqh2qypwivf321bvrvh")))) (properties `((upstream-name . "doSNOW"))) (build-system r-build-system) (propagated-inputs @@ -5431,14 +5452,14 @@ obtain a better initial configuration in non-metric MDS.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.12") + (version "1.13") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "0pqr1rcs8yg9nlh729mvlws93cqhpmv49j9bcgarh7vxzkwyv0kb")))) + "1qwxh7zq9igl7dxl5g5qjbvv0mlac3w80djnkm0w8rxnaval3gmd")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs @@ -5523,14 +5544,14 @@ movies, and TV shows.") (define-public r-ggsignif (package (name "r-ggsignif") - (version "0.5.0") + (version "0.6.0") (source (origin (method url-fetch) (uri (cran-uri "ggsignif" version)) (sha256 (base32 - "0z04g5kqdj66fyfxb5d2m7njkqd7idbiy4xgsnxdh5pbh3cr643x")))) + "17j9hg967k1wp9xw3x84mqss58jkb8pvlrnlchz4i1hklgykxqbg")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) @@ -5548,14 +5569,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.2.1") + (version "0.2.2") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0a4dv6a752hwvc7l31xs7bgqhfzfdy94xp6wgwaxf5dxm46na7k1")))) + "0r5knv3707pmpngmj60zn761y3bh8lj89dhh1b80ss083xnxr4qw")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) @@ -5569,6 +5590,7 @@ and adds the annotation to the plot.") ("r-magrittr" ,r-magrittr) ("r-polynom" ,r-polynom) ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) ("r-tidyr" ,r-tidyr))) (home-page "http://www.sthda.com/english/rpkgs/ggpubr") @@ -5628,14 +5650,14 @@ clustering.") (define-public r-factominer (package (name "r-factominer") - (version "1.41") + (version "1.42") (source (origin (method url-fetch) (uri (cran-uri "FactoMineR" version)) (sha256 (base32 - "1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259")))) + "1yl16inb2m89l1czgaf0pgy9655dpr751hyx92yw6rqpd2ryznac")))) (properties `((upstream-name . "FactoMineR"))) (build-system r-build-system) (propagated-inputs @@ -5918,20 +5940,19 @@ to help insert or delete content at a specific location in the document.") (define-public r-abn (package (name "r-abn") - (version "1.3") + (version "2.1") (source (origin (method url-fetch) (uri (cran-uri "abn" version)) (sha256 (base32 - "1q9hzpxwg835711kxwygd0l2awal6f015f8s6fprwz7graz1wbbm")))) + "08jlvb6i5f7ry2dwm0jgrnn2w95vr0l67dpx13n9878lz9ld131b")))) (build-system r-build-system) (inputs `(("gsl" ,gsl))) (propagated-inputs - `(("r-cairo" ,r-cairo) - ("r-lme4" ,r-lme4) + `(("r-lme4" ,r-lme4) ("r-mass" ,r-mass) ("r-nnet" ,r-nnet) ("r-rcpp" ,r-rcpp) @@ -6070,14 +6091,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.3.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1r288hc01cpyrk3nias30fw783z2vw20qr1k67vr65anh7mwm7vb")))) + "1lw1r3mb97z5p9z25jfzlhs0sbnwp6v8kzysf0am01x4m7l3iz82")))) (build-system r-build-system) (home-page "https://easystats.github.io/insight/") (synopsis "Easy access to model information for various model objects") @@ -6527,14 +6548,14 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.15.0") + (version "1.15.3") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "1dxxkwdhxfnj2znq4c5ggrr9m5klh5pmfxg17rz59vr2hfb73m24")))) + "1jx8af9p6sxbypqvj1cci7q9sbyaw310inbjxibjcr3acj59h45h")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs @@ -6900,14 +6921,14 @@ used to teach mathematics, statistics, computation and modeling.") (define-public r-raster (package (name "r-raster") - (version "2.9-5") + (version "2.9-23") (source (origin (method url-fetch) (uri (cran-uri "raster" version)) (sha256 (base32 - "0ljrymsp4zzaxdj1l0mw0a6hi88m5h0h920ixfzrg0szbyxqd0yk")))) + "1brqigic8ygr223bp2hgk5qjz3q03r4sfglrv4an0ghy7fgfralh")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -7468,14 +7489,14 @@ multiple-imputation datasets.") (define-public r-magick (package (name "r-magick") - (version "2.0") + (version "2.1") (source (origin (method url-fetch) (uri (cran-uri "magick" version)) (sha256 (base32 - "18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m")))) + "1pz71maz05gx4ds1wfw0alggc8nn2w75lj12dg1zr72s3kybhkzg")))) (build-system r-build-system) (inputs `(("imagemagick" ,imagemagick) @@ -7857,14 +7878,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.3.5.1") + (version "1.4") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "0rgzjvmp3yqhwgfg96v17wi8gbafzbrmz134shj2jsf5bsmw6vbj")))) + "1ynf9hhbch83k63lwps69ijfch30fk5v0sc418ck264c5vih26dh")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -8089,14 +8110,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.2.2") + (version "0.2.5") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "09r654lrhwwnshn5h2s2fbx3c8wigv3j4sva5hmfnkwjg8cclhd9")))) + "08d3bsb6li59n17bx1zrqnlnvniyb3vls9kl856km4chx3b2ff82")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -8114,14 +8135,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.2.0") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "1pzd6z7i1jxr2xi1shg3d0bxlbpmjl7kpmwgjnfys6syv57znd1z")))) + "13j74ffhx950kacs86ixx84nviq9qlwzr7hjnhkmzw2hspjxq99w")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -8141,14 +8162,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.10.0") + (version "0.11.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0gmqzjk8k8q6j4q6asv9f3b1fv4qrw5w8xa48ha3y98shzm5np9k")))) + "1b0lxa8bljdh6h4lk7pql1lrhjlvh7p5c8qlgb8ac6ay8hb79vmi")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -8175,14 +8196,14 @@ results using @code{ggplot2}.") (define-public r-sjplot (package (name "r-sjplot") - (version "2.6.3") + (version "2.7.0") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 (base32 - "0h1mkmp5mrkbf7y3zh6m4cnm737cpg1m5si0lrmal7j2ixqicwjy")))) + "1m0gy991fmxvqry91kkzdkdapyalhrwql25d0hg2a2naxgfw4zpk")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs @@ -8192,6 +8213,7 @@ results using @code{ggplot2}.") ("r-forcats" ,r-forcats) ("r-ggeffects" ,r-ggeffects) ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) ("r-glmmtmb" ,r-glmmtmb) ("r-insight" ,r-insight) ("r-knitr" ,r-knitr) @@ -8311,14 +8333,14 @@ terminals that do not support Unicode.") (define-public r-usethis (package (name "r-usethis") - (version "1.5.0") + (version "1.5.1") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "0pn6ka3726psaqlx573g6nxi90apf0rn5m4k2lz1jr66xdc19sag")))) + "07an5wbikilg7cb3q6x5aykw8dfqnjrc3wpfb7gjmy0d9fh20fcy")))) (build-system r-build-system) (propagated-inputs `(("r-clipr" ,r-clipr) @@ -8674,14 +8696,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "0.23-0") + (version "0.24-1") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "0yv4s7461swn0116y4wq9v139p1br5rr6hhnq1cmkbvybmwj2vp7")))) + "14w7kcwr5hxmjcjmdm5ia9ka3bw1nl18pxlm1vpw62nmvicn3455")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) @@ -8908,14 +8930,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.100.24") + (version "0.100.26") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "0nm3iyvhhmh0zlywkfmrq3vyh8z1l296xxfmcky0ifd2qnysfcqj")))) + "0h77akviwjd86j2qyx326xynbmwhypd6ydprzlwqnidd4ckrr271")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -9374,14 +9396,14 @@ maps.") (define-public r-tidytree (package (name "r-tidytree") - (version "0.2.4") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "tidytree" version)) (sha256 (base32 - "04bznlfs617plv258nmsyq2pywnijcnzy2pbn5b2fgjk2xqkp29w")))) + "13mhizbsawmfqjpnzb73yw6kn1f1wlz0vhyzj3g0rj6ry880rw89")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -9442,14 +9464,14 @@ giving it a description in the specific format.") (define-public r-sparsesvd (package (name "r-sparsesvd") - (version "0.1-4") + (version "0.2") (source (origin (method url-fetch) (uri (cran-uri "sparsesvd" version)) (sha256 (base32 - "1yf373552wvdnd65r7hfcqa3v29dqn7jd4cn431mqd2acnqjrsam")))) + "1xm969fjq3fv1p2sqza2apz8picibj4s2agpwf1sx9nwn3b587qs")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) (home-page "http://tedlab.mit.edu/~dr/SVDLIBC/") @@ -9664,14 +9686,14 @@ diagnostics for controlling type-1 errors are also provided.") (define-public r-flare (package (name "r-flare") - (version "1.6.0") + (version "1.6.0.2") (source (origin (method url-fetch) (uri (cran-uri "flare" version)) (sha256 (base32 - "0ygif9a7a99qwv0b488wymmmncp6f5ww9yz13s4qs6p8yf37x1r1")))) + "1ybrsx1djqldw0l5l1iz4pfh6xxb8ckkg1ric7wnsr51wm9ljlh5")))) (build-system r-build-system) (propagated-inputs `(("r-igraph" ,r-igraph) @@ -9764,14 +9786,14 @@ Touzet and Varre (2007).") (define-public r-rnifti (package (name "r-rnifti") - (version "0.11.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (cran-uri "RNifti" version)) (sha256 (base32 - "0zs8ffa6gpi9cygxk7xjin6k3vpvfgb540a506zlk50bf6kc5nlf")))) + "0jcgdg5k2swmi57aqj347kfi1fc4nvag7pxdfz61kc0vqqamm0wg")))) (properties `((upstream-name . "RNifti"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) @@ -9787,14 +9809,14 @@ used by other packages.") (define-public r-shades (package (name "r-shades") - (version "1.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "shades" version)) (sha256 (base32 - "0v0xp9l1zyq4iysmkrbdwk4r1rksjj8p5c1726yrcgyg55mj59nv")))) + "1zg95sjhrfvbdlfc387g9p0vnb8nb6agdk1mb3wq3kwkm2da0bqj")))) (build-system r-build-system) (home-page "https://github.com/jonclayden/shades") (synopsis "Simple color manipulation") @@ -10143,23 +10165,51 @@ library.") and manipulating sets of ontological terms.") (license license:gpl2+))) +(define-public r-gargle + (package + (name "r-gargle") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "gargle" version)) + (sha256 + (base32 + "0vqgp4w03sdyj0q96gxkybqflzzbaw84zifsbi7pxk5y08fimj2v")))) + (build-system r-build-system) + (propagated-inputs + `(("r-fs" ,r-fs) + ("r-glue" ,r-glue) + ("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite) + ("r-rlang" ,r-rlang) + ("r-withr" ,r-withr))) + (home-page "https://gargle.r-lib.org") + (synopsis "Utilities for working with Google APIs") + (description + "This package provides utilities for working with Google APIs. This +includes functions and classes for handling common credential types and for +preparing, executing, and processing HTTP requests.") + (license license:expat))) + (define-public r-bigrquery (package (name "r-bigrquery") - (version "1.1.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "bigrquery" version)) (sha256 (base32 - "1if39xkr231xmjq10fx2g7bgg4jgfd3wzx1p9g3pq4hbf2s6x0is")))) + "1ggh2gngr5x0g6y7d55y6kvn94anf7qi1bkc28cjmw61hxjq38fb")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) ("r-bit64" ,r-bit64) ("r-curl" ,r-curl) ("r-dbi" ,r-dbi) + ("r-gargle" ,r-gargle) ("r-glue" ,r-glue) ("r-httr" ,r-httr) ("r-jsonlite" ,r-jsonlite) @@ -10167,6 +10217,7 @@ and manipulating sets of ontological terms.") ("r-progress" ,r-progress) ("r-rapidjsonr" ,r-rapidjsonr) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-tibble" ,r-tibble))) (home-page "https://github.com/rstats-db/bigrquery") (synopsis "R interface to Google's BigQuery API") @@ -10724,14 +10775,14 @@ covariance functions for large data sets.") (define-public r-spatialextremes (package (name "r-spatialextremes") - (version "2.0-7") + (version "2.0-7.2") (source (origin (method url-fetch) (uri (cran-uri "SpatialExtremes" version)) (sha256 (base32 - "1y0h1pcfqp9ynxsr3yrfbihlwm25ypyb88jmm5k2g7xvm8h9g050")))) + "0aqq9ryxi4xsdqjhc1lhb7ai8szs7m2vys6nn0ygps1w3pm4xwj8")))) (properties `((upstream-name . "SpatialExtremes"))) (build-system r-build-system) @@ -10994,14 +11045,14 @@ model with finite state space using the Aalen-Johansen estimator.") (define-public r-epi (package (name "r-epi") - (version "2.37") + (version "2.38") (source (origin (method url-fetch) (uri (cran-uri "Epi" version)) (sha256 (base32 - "1lanr9x0c6w22406p56j7cwk6wck8njq6pscb4gzc613d68zj1lk")))) + "0ald9fjynrlyah8nzwfs49a08j4myd3c5bm56zn61gg5pyyhi8hd")))) (properties `((upstream-name . "Epi"))) (build-system r-build-system) (propagated-inputs @@ -11177,14 +11228,14 @@ them in distributed compute environments.") (define-public r-future (package (name "r-future") - (version "1.13.0") + (version "1.14.0") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "0h8ng2a6vg4axd5f75xcb3ip9d95zi22fa048dq2bzlnncwlznjz")))) + "1jyv2wlmpfqbk3hw269h4xg36na3wh1kd1lxmwdb40bsv4850lqa")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -11237,14 +11288,14 @@ machine or distributed on a compute cluster.") (define-public r-rsvd (package (name "r-rsvd") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "rsvd" version)) (sha256 (base32 - "1faskhf5j2bj9f971qljsmh182g3rnyilj1wwijz530a6skxidzz")))) + "0fia77y5fxnhwkcxlgp98ygb8fdfraky75x80hkf7kvvpwc5rzn8")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -11445,14 +11496,14 @@ identifying outliers.") (define-public r-bayesm (package (name "r-bayesm") - (version "3.1-1") + (version "3.1-3") (source (origin (method url-fetch) (uri (cran-uri "bayesm" version)) (sha256 (base32 - "0y30cza92s6kgvmxjpr6f5g0qbcck7hslqp89ncprarhxiym2m28")))) + "041ach2f2vrqzd5kz17v7wmkjz6z8cjjihpk4qvczm4cr9z85r2i")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -11849,14 +11900,14 @@ probabilities from a standard bivariate normal CDF.") (define-public r-lavaan (package (name "r-lavaan") - (version "0.6-3") + (version "0.6-4") (source (origin (method url-fetch) (uri (cran-uri "lavaan" version)) (sha256 (base32 - "0hw856kv11zqn6nd4216rh19i6xbnc1rh044r7jvvxkhzgbqkyxz")))) + "1zf0sxpms35rhq2syb7r3sshhc8kjvc3pv97dk9x0gf4xl7pck4g")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -12073,14 +12124,14 @@ running IRkernel session.") (define-public r-irkernel (package (name "r-irkernel") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) (uri (cran-uri "IRkernel" version)) (sha256 (base32 - "1gij59b068qp7sbn9d0b9ghmnhfks15a9anj7bp26acv0yvdsg3s")))) + "040qig675zaxsf81ranmvk293amrswi5098k69wyq0vgqyin6vwp")))) (properties `((upstream-name . "IRkernel"))) (build-system r-build-system) (arguments @@ -12192,14 +12243,14 @@ R, enabling interactive analysis and visualization of genome-scale data.") (define-public r-rematch2 (package (name "r-rematch2") - (version "2.0.1") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "rematch2" version)) (sha256 (base32 - "16k0i5p7fa3qfxv59ijyn638wpz8n4jrkrnilqmh5g9l8f8bn4h6")))) + "00cznm6rk33b53w7zybkz7549bnydc66znpi5mb0xd24pmqp0rvq")))) (build-system r-build-system) (propagated-inputs `(("r-tibble" ,r-tibble))) @@ -12541,14 +12592,14 @@ classes.") (define-public r-classint (package (name "r-classint") - (version "0.3-3") + (version "0.4-1") (source (origin (method url-fetch) (uri (cran-uri "classInt" version)) (sha256 (base32 - "0c2z6shlxa928xa20yl956r06lx20mji3mwipdvmj3f4z5g6hgm9")))) + "00q1bpgblrldckn1rk166q1b0hgap2sjjyfmfcyh6ydk6y73ziir")))) (properties `((upstream-name . "classInt"))) (build-system r-build-system) (propagated-inputs @@ -12616,14 +12667,14 @@ sampling.") (define-public r-deldir (package (name "r-deldir") - (version "0.1-21") + (version "0.1-23") (source (origin (method url-fetch) (uri (cran-uri "deldir" version)) (sha256 (base32 - "03392pl6j8rm3n32xrfkyfx866k1vm5sj87pva70yyiwh70vrnmr")))) + "0790dwxb2mz1ffz8gd5vwdr0if2q76dzy3vab5rsykf9kz72n4g0")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/deldir") @@ -12640,14 +12691,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.7-4") + (version "0.7-7") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "0vnyr7xyfcl928kbrb1k8l4fkd0cjrfq486g6gxpvy5j0cc2h4i1")))) + "192hw52x1qlif8zyai1kff1wiyr3yl5f7jj1rk3k0nr8das0qy6i")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -13022,18 +13073,19 @@ inbred lines, F2 intercrosses, and association mapping populations.") (define-public r-ldheatmap (package (name "r-ldheatmap") - (version "0.99-5") + (version "0.99-7") (source (origin (method url-fetch) (uri (cran-uri "LDheatmap" version)) (sha256 (base32 - "0il3g3n3bzv74lz7dlhyiwc2x2417v6yhx2g47pahxdzqa09kf4s")))) + "1r0j8bihi5z1x0sgaf7dwzpsw9i0nc1vylvipvc0cia2ka1lr9dc")))) (properties `((upstream-name . "LDheatmap"))) (build-system r-build-system) (propagated-inputs `(("r-genetics" ,r-genetics) + ("r-rcpp" ,r-rcpp) ("r-snpstats" ,r-snpstats))) (home-page "http://stat.sfu.ca/statgen/research/ldheatmap.html") (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") @@ -13112,13 +13164,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.11") + (version "0.12") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "0w4fkv5fqiaqgkx44p0s161imf29zir9742126xkz1pl1j25jn1r")))) + "1c2v0rpa1rrpbx8yb66sfvrf4gf57f6a8x7ydjqqbkbwhxdlrsrq")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -13585,14 +13637,14 @@ package.") (define-public r-ggplotify (package (name "r-ggplotify") - (version "0.0.3") + (version "0.0.4") (source (origin (method url-fetch) (uri (cran-uri "ggplotify" version)) (sha256 (base32 - "14hqlpvnaq5psz1ljcpw9isa06827rg3fm5c1dx159rsjfi56yby")))) + "0nv3wdmxnc5ww9m3xlgnb0jp30j45dg33nqc6gg3y36svg8anjcg")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -13712,14 +13764,14 @@ sets of URLs.") (define-public r-ggforce (package (name "r-ggforce") - (version "0.2.2") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "ggforce" version)) (sha256 (base32 - "0snxx9zhcccxa7pz9pf3bjqmcmv9mz4m47v81hklnhm25jj40xg2")))) + "118qyzy8h9kkkdpjd09667gxgw7xy1kbc8r87pswh54ixn8hymwk")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -13730,7 +13782,9 @@ sets of URLs.") ("r-rcppeigen" ,r-rcppeigen) ("r-rlang" ,r-rlang) ("r-scales" ,r-scales) - ("r-tweenr" ,r-tweenr))) + ("r-tidyselect" ,r-tidyselect) + ("r-tweenr" ,r-tweenr) + ("r-withr" ,r-withr))) (home-page "https://ggforce.data-imaginist.com") (synopsis "Accelerating ggplot2") (description @@ -14562,14 +14616,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.") (define-public r-dalex (package (name "r-dalex") - (version "0.4") + (version "0.4.4") (source (origin (method url-fetch) (uri (cran-uri "DALEX" version)) (sha256 (base32 - "1mr8lqq8s4aacmh7xdhmkmv8vsjqjczlqlaw27xnsljgj2kgq87a")))) + "04i17ni8g595jj8dxdfwr9vsxmdn2kkam90ab68vlwws3ywqjl6r")))) (properties `((upstream-name . "DALEX"))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) @@ -14588,14 +14642,14 @@ and model output.") (define-public r-enrichr (package (name "r-enrichr") - (version "1.0") + (version "2.0") (source (origin (method url-fetch) (uri (cran-uri "enrichR" version)) (sha256 (base32 - "0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn")))) + "056m6hksfss29fj7zvlk7pbh8g3gq84kjh3240isrsnhp9m1h9iz")))) (properties `((upstream-name . "enrichR"))) (build-system r-build-system) (propagated-inputs @@ -14698,18 +14752,17 @@ into R and converted to @code{BibEntry} objects.") (define-public r-citr (package (name "r-citr") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "citr" version)) (sha256 (base32 - "0pik6s6xk5768s3kkppw2192dj455py53gsn6k2b7xgg96ircy0g")))) + "0p2sg0fl7cppxxmr20qyqzs2469kglmgpsvykynw4qx501as57rc")))) (build-system r-build-system) (propagated-inputs `(("r-assertthat" ,r-assertthat) - ("r-bibtex" ,r-bibtex) ("r-curl" ,r-curl) ("r-httr" ,r-httr) ("r-miniui" ,r-miniui) @@ -14729,14 +14782,14 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "0.82.1") + (version "0.90.0.2") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "0plhx63wcm4syslzmjfv6bdgaqn96fnav048hrj0vxk4dzgfp8sq")))) + "1gy9rzg43mjpfis893vf15drmbigfn0481zrzss9ajnmnk0q8194")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) |