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Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 186 |
1 files changed, 186 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f8d17e1ad2..c4cf394e6e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2738,3 +2738,189 @@ ordered factor data types.") "This package provides tools for the computation of matrix and scalar exponentiation.") (license license:gpl2))) + +(define-public r-heatmaply + (package + (name "r-heatmaply") + (version "0.14.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "heatmaply" version)) + (sha256 + (base32 + "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-assertthat" ,r-assertthat) + ("r-colorspace" ,r-colorspace) + ("r-dendextend" ,r-dendextend) + ("r-ggplot2" ,r-ggplot2) + ("r-gplots" ,r-gplots) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-magrittr" ,r-magrittr) + ("r-plotly" ,r-plotly) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-reshape2" ,r-reshape2) + ("r-scales" ,r-scales) + ("r-seriation" ,r-seriation) + ("r-viridis" ,r-viridis) + ("r-webshot" ,r-webshot))) + (home-page "https://cran.r-project.org/package=heatmaply") + (synopsis "Interactive cluster heat maps using plotly") + (description + "This package enables you to create interactive cluster heatmaps that can +be saved as a stand-alone HTML file, embedded in R Markdown documents or in a +Shiny app, and made available in the RStudio viewer pane. Hover the mouse +pointer over a cell to show details or drag a rectangle to zoom. A heatmap is +a popular graphical method for visualizing high-dimensional data, in which a +table of numbers is encoded as a grid of colored cells. The rows and columns +of the matrix are ordered to highlight patterns and are often accompanied by +dendrograms.") + ;; Either version of the license. + (license (list license:gpl2 license:gpl3)))) + +(define-public r-cgdsr + (package + (name "r-cgdsr") + (version "1.2.10") + (source + (origin + (method url-fetch) + (uri (cran-uri "cgdsr" version)) + (sha256 + (base32 + "1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23")))) + (build-system r-build-system) + (propagated-inputs + `(("r-r-methodss3" ,r-r-methodss3) + ("r-r-oo" ,r-r-oo))) + (home-page "https://github.com/cBioPortal/cgdsr") + (synopsis "R-based API for accessing the MSKCC Cancer Genomics Data Server") + (description + "This package provides a basic set of R functions for querying the Cancer +Genomics Data Server (CGDS), hosted by the Computational Biology Center at +Memorial-Sloan-Kettering Cancer Center (MSKCC).") + (license license:lgpl3))) + +(define-public r-import + (package + (name "r-import") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "import" version)) + (sha256 + (base32 + "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji")))) + (build-system r-build-system) + (home-page "https://github.com/smbache/import") + (synopsis "Import mechanism for R") + (description + "This is an alternative mechanism for importing objects from packages. +The syntax allows for importing multiple objects from a package with a single +command in an expressive way. The import package bridges some of the gap +between using @code{library} (or @code{require}) and direct (single-object) +imports. Furthermore the imported objects are not placed in the current +environment. It is also possible to import objects from stand-alone @code{.R} +files.") + (license license:expat))) + +(define-public r-shinyace + (package + (name "r-shinyace") + (version "0.2.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "shinyAce" version)) + (sha256 + (base32 + "0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9")))) + (properties `((upstream-name . "shinyAce"))) + (build-system r-build-system) + (propagated-inputs + `(("r-shiny" ,r-shiny))) + (home-page "http://cran.r-project.org/web/packages/shinyAce") + (synopsis "Ace editor bindings for Shiny") + (description + "This package provides Ace editor bindings to enable a rich text editing +environment within Shiny.") + (license license:expat))) + +(define-public r-radiant-data + (package + (name "r-radiant-data") + (version "0.8.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "radiant.data" version)) + (sha256 + (base32 + "1ylina1jlrmvjkj8pwg0ip5jv1038vnzyckmf542xl7g11x8rvw1")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Delete files that are under CC-NC-SA. + (delete-file-recursively "inst/app/tools/help") + #t)))) + (properties `((upstream-name . "radiant.data"))) + (build-system r-build-system) + (propagated-inputs + `(("r-base64enc" ,r-base64enc) + ("r-broom" ,r-broom) + ("r-car" ,r-car) + ("r-curl" ,r-curl) + ("r-dplyr" ,r-dplyr) + ("r-dt" ,r-dt) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-import" ,r-import) + ("r-jsonlite" ,r-jsonlite) + ("r-knitr" ,r-knitr) + ("r-lubridate" ,r-lubridate) + ("r-magrittr" ,r-magrittr) + ("r-markdown" ,r-markdown) + ("r-pryr" ,r-pryr) + ("r-psych" ,r-psych) + ("r-readr" ,r-readr) + ("r-rmarkdown" ,r-rmarkdown) + ("r-rstudioapi" ,r-rstudioapi) + ("r-scales" ,r-scales) + ("r-shiny" ,r-shiny) + ("r-shinyace" ,r-shinyace) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr))) + (home-page "https://github.com/radiant-rstats/radiant.data") + (synopsis "Data menu for Radiant: business analytics using R and Shiny") + (description + "The Radiant Data menu includes interfaces for loading, saving, viewing, +visualizing, summarizing, transforming, and combining data. It also contains +functionality to generate reproducible reports of the analyses conducted in +the application.") + (license license:agpl3))) + +(define-public r-algdesign + (package + (name "r-algdesign") + (version "1.1-7.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "AlgDesign" version)) + (sha256 + (base32 + "0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz")))) + (properties `((upstream-name . "AlgDesign"))) + (build-system r-build-system) + (home-page "https://github.com/jvbraun/AlgDesign") + (synopsis "Algorithmic experimental design") + (description + "This package provides tools to calculate exact and approximate theory +experimental designs for D, A, and I criteria. Very large designs may be +created. Experimental designs may be blocked or blocked designs created from +a candidate list, using several criteria. The blocking can be done when whole +and within plot factors interact.") + (license license:gpl2+))) |