diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 159 |
1 files changed, 152 insertions, 7 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index eeaeefd81f..fc4baa5b54 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1411,14 +1411,14 @@ available in a vignette.") (define-public r-lava (package (name "r-lava") - (version "1.6.1") + (version "1.6.2") (source (origin (method url-fetch) (uri (cran-uri "lava" version)) (sha256 (base32 - "11k9npmzp3nk2qx0h1dwwfc37j4ddd9y54bppxby0ffnb8qlpw1k")))) + "1r47pps39cgvxhg1s0bqknf4jl91pbb0c76q5icxivhwb172fqcm")))) (build-system r-build-system) (propagated-inputs `(("r-numderiv" ,r-numderiv) @@ -1720,14 +1720,14 @@ created using basic graphics.") (define-public r-broom (package (name "r-broom") - (version "0.4.4") + (version "0.4.5") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "081x87sy6dmfvkgwfjrl5ax51k77ciyzg9x3xql25vdi92rmwj3m")))) + "1mrrqqw1bmjf2v88ziqwb5y86g29h0a3rsx2jpw0hrzrzb8i5kcb")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -1737,7 +1737,7 @@ created using basic graphics.") ("r-reshape2" ,r-reshape2) ("r-stringr" ,r-stringr) ("r-tidyr" ,r-tidyr))) - (home-page "http://github.com/tidyverse/broom") + (home-page "https://github.com/tidyverse/broom") (synopsis "Convert statistical analysis objects into tidy data frames") (description "This package provides tools to convert statistical analysis objects from @@ -4106,14 +4106,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-learnr (package (name "r-learnr") - (version "0.9.2") + (version "0.9.2.1") (source (origin (method url-fetch) (uri (cran-uri "learnr" version)) (sha256 (base32 - "1z04c1djg7ghsl7p9ypc6k5m7snahnmjy10xmrzqfayx1wkfkn9n")))) + "0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5")))) (build-system r-build-system) (propagated-inputs `(("r-evaluate" ,r-evaluate) @@ -4482,6 +4482,28 @@ functionality is added so that HDF5 objects behave very similar to their corresponding R counterparts.") (license license:asl2.0))) +(define-public r-itertools + (package + (name "r-itertools") + (version "0.1-3") + (source + (origin + (method url-fetch) + (uri (cran-uri "itertools" version)) + (sha256 + (base32 + "1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn")))) + (build-system r-build-system) + (propagated-inputs + `(("r-iterators" ,r-iterators))) + (home-page "https://cran.r-project.org/web/packages/itertools/") + (synopsis "Iterator tools") + (description + "This package provides various tools for creating iterators, many +patterned after functions in the Python @code{itertools} module, and others +patterned after functions in the snow package.") + (license license:gpl2))) + (define-public r-writexl (package (name "r-writexl") @@ -4501,3 +4523,126 @@ corresponding R counterparts.") "This package provides a data frame to xlsx exporter based on libxlsxwriter.") (license license:bsd-2))) + +(define-public r-biasedurn + (package + (name "r-biasedurn") + (version "1.07") + (source + (origin + (method url-fetch) + (uri (cran-uri "BiasedUrn" version)) + (sha256 + (base32 + "13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3")))) + (properties `((upstream-name . "BiasedUrn"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/BiasedUrn/") + (synopsis "Biased Urn model distributions") + (description + "This package provides statistical models of biased sampling in the form +of univariate and multivariate noncentral hypergeometric distributions, +including Wallenius' noncentral hypergeometric distribution and Fisher's +noncentral hypergeometric distribution (also called extended hypergeometric +distribution).") + (license license:gpl3))) + +(define-public r-goplot + (package + (name "r-goplot") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "GOplot" version)) + (sha256 + (base32 + "1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix")))) + (properties `((upstream-name . "GOplot"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggdendro" ,r-ggdendro) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "https://github.com/wencke/wencke.github.io") + (synopsis "Visualization of functional analysis data") + (description + "This package provides an implementation of multilayered visualizations +for enhanced graphical representation of functional analysis data. It +combines and integrates omics data derived from expression and functional +annotation enrichment analyses. Its plotting functions have been developed +with an hierarchical structure in mind: starting from a general overview to +identify the most enriched categories (modified bar plot, bubble plot) to a +more detailed one displaying different types of relevant information for the +molecules in a given set of categories (circle plot, chord plot, cluster plot, +Venn diagram, heatmap).") + (license license:gpl2))) + +(define-public r-getopt + (package + (name "r-getopt") + (version "1.20.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "getopt" version)) + (sha256 + (base32 + "13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x")))) + (build-system r-build-system) + (home-page "https://github.com/trevorld/getopt") + (synopsis "Command-line option processor for R") + (description + "This package is designed to be used with Rscript to write shebang +scripts that accept short and long options. Many users will prefer to +use the packages @code{optparse} or @code{argparse} which add extra +features like automatically generated help options and usage texts, +support for default values, positional argument support, etc.") + (license license:gpl2+))) + +(define-public r-findpython + (package + (name "r-findpython") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "findpython" version)) + (sha256 + (base32 + "1y08jk2ffmkf9zpwiz2xymjhfwqvls9vzsnq62v278ghw9d571jl")))) + (build-system r-build-system) + (home-page "https://github.com/trevorld/findpython") + (synopsis "Functions to find an acceptable Python binary") + (description + "This package was designed to find an acceptable Python binary that +matches version and feature constraints.") + (license license:expat))) + +;; This in not the same as "r-argparser" +(define-public r-argparse + (package + (name "r-argparse") + (version "1.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "argparse" version)) + (sha256 + (base32 + "0fzrbj87b274vf96azdnsjxk2nf45d5wy58vzmlah4b4h7q4j524")))) + (build-system r-build-system) + (inputs `(("python" ,python))) + (propagated-inputs + `(("r-findpython" ,r-findpython) + ("r-getopt" ,r-getopt) + ("r-jsonlite" ,r-jsonlite) + ("r-proto" ,r-proto))) + (home-page "https://github.com/trevorld/argparse") + (synopsis "Command line optional and positional argument parser") + (description + "This package provides a command line parser to be used with Rscript to +write shebang scripts that gracefully accept positional and optional arguments +and automatically generate usage notices.") + (license license:gpl2+))) |