diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 80 |
1 files changed, 38 insertions, 42 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2bae609614..0767bac7d0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10936,7 +10936,7 @@ in an easily configurable manner.") (define-public pigx-bsseq (package (name "pigx-bsseq") - (version "0.1.7") + (version "0.1.8") (source (origin (method url-fetch) (uri (string-append "https://github.com/BIMSBbioinfo/pigx_bsseq/" @@ -10944,7 +10944,7 @@ in an easily configurable manner.") "/pigx_bsseq-" version ".tar.gz")) (sha256 (base32 - "1hfiignq3410dbl6f67vc6zr69abknpcgxixx475dspky2jb5lyn")))) + "1s8zgrqxabrawrgkga5rmgb0gyzj7ck47p3rkicjkfv7r2yjy0d7")))) (build-system gnu-build-system) (arguments `(;; TODO: tests currently require 12+GB of RAM. See @@ -11592,47 +11592,43 @@ including: (license license:gpl3+))) (define-public r-dyngen - (let ((commit "37fd1798fcbd41093fb3d7775bb2d268e2fc82b6") - (revision "1")) - (package - (name "r-dyngen") - (version (git-version "1.0.3" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/dynverse/dyngen") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "05pr6v1b8yji1jnj3fwx0crmg8ay6yy6lp9qjmcyvhkwbmf3kvc7")))) - (properties `((upstream-name . "dyngen"))) - (build-system r-build-system) - (propagated-inputs - (list r-assertthat - r-dplyr - r-dynutils - r-ggplot2 - r-ggraph - r-ggrepel - r-gillespiessa2 - r-igraph - r-lmds - r-matrix - r-patchwork - r-pbapply - r-purrr - r-rlang - r-tibble - r-tidygraph - r-tidyr - r-viridis)) - (home-page "https://github.com/dynverse/dyngen") - (synopsis "Multi-Modal simulator for single-cell omics analyses") - (description - "This package provides a multi-modal simulation engine for studying + (package + (name "r-dyngen") + (version "1.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "dyngen" version)) + (sha256 + (base32 + "1qmqy0dyiz30zpf3ii4h2ip6hg2449ghb474sjzrqa1yk9mdpy4i")))) + (properties `((upstream-name . "dyngen"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-dplyr + r-dynutils + r-ggplot2 + r-ggraph + r-ggrepel + r-gillespiessa2 + r-igraph + r-lmds + r-matrix + r-patchwork + r-pbapply + r-purrr + r-rlang + r-tibble + r-tidygraph + r-tidyr + r-viridis)) + (home-page "https://github.com/dynverse/dyngen") + (synopsis "Multi-Modal simulator for single-cell omics analyses") + (description + "This package provides a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution.") - (license license:expat)))) + (license license:expat))) ;; Needed for r-liana (define-public r-omnipathr/devel |