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-rw-r--r--gnu/packages/bioinformatics.scm28
1 files changed, 9 insertions, 19 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4d84b90f1e..7509f07d4a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1971,15 +1971,18 @@ accessing bigWig files.")
(define-public python-dendropy
(package
(name "python-dendropy")
- (version "4.2.0")
+ (version "4.4.0")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "DendroPy" version))
+ ;; Source from GitHub so that tests are included.
+ (uri
+ (string-append "https://github.com/jeetsukumaran/DendroPy/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "15c7s3d5gf19ljsxvq5advaa752wfi7pwrdjyhzmg85hccyvp47p"))
- (patches (search-patches "python-dendropy-fix-tests.patch"))))
+ "0v2fccny5xjaah546bsch1mw4kh61qq5frz2ibllxs9mp6ih9bsn"))))
(build-system python-build-system)
(home-page "http://packages.python.org/DendroPy/")
(synopsis "Library for phylogenetics and phylogenetic computing")
@@ -1987,23 +1990,10 @@ accessing bigWig files.")
"DendroPy is a library for phylogenetics and phylogenetic computing: reading,
writing, simulation, processing and manipulation of phylogenetic
trees (phylogenies) and characters.")
- (license license:bsd-3)
- (properties `((python2-variant . ,(delay python2-dendropy))))))
+ (license license:bsd-3)))
(define-public python2-dendropy
- (let ((base (package-with-python2 (strip-python2-variant python-dendropy))))
- (package
- (inherit base)
- (arguments
- `(#:python ,python-2
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- ;; There is currently a test failure that only happens on some
- ;; systems, and only using "setup.py test"
- (lambda _ (zero? (system* "nosetests")))))))
- (native-inputs `(("python2-nose" ,python2-nose)
- ,@(package-native-inputs base))))))
+ (package-with-python2 python-dendropy))
(define-public python-py2bit
(package