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Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 105c01e235..abea913723 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3459,6 +3459,42 @@ The main functions of FastQC are: @end itemize\n") (license license:gpl3+))) +(define-public fastp + (package + (name "fastp") + (version "0.14.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/OpenGene/fastp.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1r6ms5zbf5rps4rgp4z73nczadl00b5rqylw8f684isfz27dp0xh")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; there are none + #:make-flags + (list (string-append "BINDIR=" (assoc-ref %outputs "out") "/bin")) + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'install 'create-target-dir + (lambda* (#:key outputs #:allow-other-keys) + (mkdir-p (string-append (assoc-ref outputs "out") "/bin")) + #t))))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/OpenGene/fastp/") + (synopsis "All-in-one FastQ preprocessor") + (description + "Fastp is a tool designed to provide fast all-in-one preprocessing for +FastQ files. This tool has multi-threading support to afford high +performance.") + (license license:expat))) + (define-public htslib (package (name "htslib") |