diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 16 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 03bb3599d2..f6349cfb8f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1774,6 +1774,10 @@ distribution, coverage uniformity, strand specificity, etc.") ;; systems. #:tests? ,(string=? (or (%current-system) (%current-target-system)) "x86_64-linux") + #:modules ((ice-9 ftw) + (ice-9 regex) + (guix build gnu-build-system) + (guix build utils)) #:make-flags (list "LIBCURSES=-lncurses" (string-append "prefix=" (assoc-ref %outputs "out"))) #:phases @@ -1798,7 +1802,18 @@ distribution, coverage uniformity, strand specificity, etc.") (let ((lib (string-append (assoc-ref outputs "out") "/lib"))) (mkdir-p lib) (copy-file "libbam.a" (string-append lib "/libbam.a")))) - (alist-delete 'configure %standard-phases))))) + (alist-cons-after + 'install 'install-headers + (lambda* (#:key outputs #:allow-other-keys) + (let ((include (string-append (assoc-ref outputs "out") + "/include/samtools/"))) + (mkdir-p include) + (for-each (lambda (file) + (copy-file file (string-append include + (basename file)))) + (scandir "." (lambda (name) (string-match "\\.h$" name)))) + #t)) + (alist-delete 'configure %standard-phases)))))) (native-inputs `(("pkg-config" ,pkg-config))) (inputs `(("ncurses" ,ncurses) ("perl" ,perl) |