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-rw-r--r--gnu/packages/bioinformatics.scm16
1 files changed, 15 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 645c439b64..8c75607a65 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -18084,8 +18084,16 @@ module capable of computing base-level alignments for very large sequences.")
(base32
"1rf0p7dnakjry0fa6ax1h762bn0l5n6ibfdxn077mjvwgpqan51l"))))
(build-system cmake-build-system)
+ (outputs '("out" "doc"))
(arguments
(list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'set-HOME
+ ;; The build spams ‘Fontconfig error: No writable cache
+ ;; directories’ in a seemingly endless loop otherwise.
+ (lambda _
+ (setenv "HOME" "/tmp"))))
#:configure-flags
#~(list "-DGDCM_BUILD_TESTING=true"
(string-append "-DCMAKE_CTEST_ARGUMENTS=-E;"
@@ -18096,7 +18104,13 @@ module capable of computing base-level alignments for very large sequences.")
"|TestAnonymizer4"
"|TestPrinter1"
"|TestEcho"
- "|TestFind'"))))
+ "|TestFind'")
+ "-DGDCM_DOCUMENTATION:BOOL=ON"
+ "-DGDCM_PDF_DOCUMENTATION:BOOL=OFF"
+ (string-append "-DGDCM_INSTALL_DOC_DIR="
+ #$output:doc "/share/doc/" #$name)
+ "-DGDCM_BUILD_DOCBOOK_MANPAGES:BOOL=OFF"))) ; TODO: need ‘xsl-ns’
+ (native-inputs (list doxygen graphviz))
(home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page")
(synopsis "Grassroots DICOM library")
(description