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-rw-r--r--gnu/packages/bioinformatics.scm43
1 files changed, 0 insertions, 43 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 415210085e..05805d1a8b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,49 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-rsamtools
- (package
- (name "r-rsamtools")
- (version "2.6.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "Rsamtools" version))
- (sha256
- (base32
- "040pggkwglc6wy90qnc7xcdnaj0v3iqlykvvsl74241409qly554"))))
- (properties
- `((upstream-name . "Rsamtools")))
- (build-system r-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'use-system-zlib
- (lambda _
- (substitute* "DESCRIPTION"
- (("zlibbioc, ") ""))
- (substitute* "NAMESPACE"
- (("import\\(zlibbioc\\)") ""))
- #t)))))
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-biostrings" ,r-biostrings)
- ("r-bitops" ,r-bitops)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-rhtslib" ,r-rhtslib)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xvector" ,r-xvector)))
- (home-page "https://bioconductor.org/packages/release/bioc/html/Rsamtools.html")
- (synopsis "Interface to samtools, bcftools, and tabix")
- (description
- "This package provides an interface to the @code{samtools},
-@code{bcftools}, and @code{tabix} utilities for manipulating SAM (Sequence
-Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed
-tab-delimited (tabix) files.")
- (license license:expat)))
-
(define-public r-delayedarray
(package
(name "r-delayedarray")