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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 34630a8f33..9225d39246 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4536,6 +4536,37 @@ domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.") (license license:gpl2+))) +(define-public r-italics + (package + (name "r-italics") + (version "2.58.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ITALICS" version)) + (sha256 + (base32 "0g937h9zxkxnm424wh58b46mfasdd7pqy5c04r0a46mx9lxibgbs")))) + (properties `((upstream-name . "ITALICS"))) + (build-system r-build-system) + (propagated-inputs + (list r-affxparser + r-dbi + r-glad + r-italicsdata + r-oligo + r-oligoclasses + r-pd-mapping50k-xba240)) + (home-page "http://bioinfo.curie.fr") + (synopsis "Normalizing of the Affymetrix GeneChip human mapping") + (description + "This package provides tools for normalizing and analyzing of GeneChip +Mapping 100K and 500K Set. Affymetrix GeneChip Human Mapping 100K and 500K +Set allows the DNA copy number mea- surement of respectively 2× 50K and 2× +250K SNPs along the genome. Their high density allows a precise localization +of genomic alterations and makes them a powerful tool for cancer and copy +number polymorphism study.") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor. (define-public r-absfiltergsea (package |