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-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 20 insertions, 10 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 28522e7c13..2fbfdba2d8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1958,14 +1958,14 @@ experiments.")
(define-public r-genomicinteractions
(package
(name "r-genomicinteractions")
- (version "1.20.1")
+ (version "1.20.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GenomicInteractions" version))
(sha256
(base32
- "140bp7c8p079xh5wwxmrq3a73pm6mdc9czq5w2gzjml7dgrca38a"))))
+ "0mqb899wah5n7bp2lajhwy2zpqqhi18plza3i3m51rfl9n62smph"))))
(properties
`((upstream-name . "GenomicInteractions")))
(build-system r-build-system)
@@ -1986,6 +1986,8 @@ experiments.")
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/ComputationalRegulatoryGenomicsICL/GenomicInteractions/")
(synopsis "R package for handling genomic interaction data")
(description
@@ -4077,14 +4079,14 @@ footprints.")
(define-public r-gofuncr
(package
(name "r-gofuncr")
- (version "1.6.0")
+ (version "1.6.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "GOfuncR" version))
(sha256
(base32
- "0hmi13pz923fm95asys615rih63b1i2nvynfczr1zcsc9fzn4h35"))))
+ "1wk7ja6f5il8jx8v05ijzcs9pijp3b953h566ya66xp7dz5jg9rb"))))
(properties `((upstream-name . "GOfuncR")))
(build-system r-build-system)
(propagated-inputs
@@ -4095,6 +4097,8 @@ footprints.")
("r-mapplots" ,r-mapplots)
("r-rcpp" ,r-rcpp)
("r-vioplot" ,r-vioplot)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/GOfuncR/")
(synopsis "Gene ontology enrichment using FUNC")
(description
@@ -5829,14 +5833,14 @@ sequential way to mimic the manual gating strategy.")
(define-public r-cytoml
(package
(name "r-cytoml")
- (version "1.12.0")
+ (version "1.12.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CytoML" version))
(sha256
(base32
- "0m8x18wkvis85cawv7j07pk59w76wnzy93ia99gd24j82z4h97p1"))))
+ "0wgi8rwb4spxzd5xvs5amfr5g82ny2nad57j3nmhnhnj1cpirjxz"))))
(properties `((upstream-name . "CytoML")))
(build-system r-build-system)
(inputs
@@ -5866,6 +5870,8 @@ sequential way to mimic the manual gating strategy.")
("r-runit" ,r-runit)
("r-xml" ,r-xml)
("r-yaml" ,r-yaml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/RGLab/CytoML")
(synopsis "GatingML interface for cross platform cytometry data sharing")
(description
@@ -5906,14 +5912,14 @@ self-organizing map clustering and minimal spanning trees.")
(define-public r-mixomics
(package
(name "r-mixomics")
- (version "6.10.8")
+ (version "6.10.9")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mixOmics" version))
(sha256
(base32
- "0307vhx9ck24rxqbvq15815ssxcc226sl2la060n204b51wi9jaa"))))
+ "0b457yg8mwqlrn5l344w8qcj8v2ghlj1wdx1ysxbncqvqx7nvgig"))))
(properties `((upstream-name . "mixOmics")))
(build-system r-build-system)
(propagated-inputs
@@ -5930,6 +5936,8 @@ self-organizing map clustering and minimal spanning trees.")
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-reshape2" ,r-reshape2)
("r-tidyr" ,r-tidyr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "http://www.mixOmics.org")
(synopsis "Multivariate methods for exploration of biological datasets")
(description
@@ -7490,14 +7498,14 @@ accessing web references for elements/sets are also available in BiocSet.")
(define-public r-biocworkflowtools
(package
(name "r-biocworkflowtools")
- (version "1.12.0")
+ (version "1.12.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BiocWorkflowTools" version))
(sha256
(base32
- "1v4bhnpdkmllm7aghms9b7369hkrgz7mn69wbrqg1x42pgkf30ad"))))
+ "0z28s572wg9qxv52dmixxz1xf1z3fyp2j7kzk0k32fp628918wr6"))))
(properties
`((upstream-name . "BiocWorkflowTools")))
(build-system r-build-system)
@@ -7511,6 +7519,8 @@ accessing web references for elements/sets are also available in BiocSet.")
("r-rstudioapi" ,r-rstudioapi)
("r-stringr" ,r-stringr)
("r-usethis" ,r-usethis)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/BiocWorkflowTools/")
(synopsis "Tools to aid the development of Bioconductor Workflow packages")
(description