diff options
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 67a62faa46..375104648b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2317,6 +2317,54 @@ reproducible gene expression signatures capable of accurately distinguishing tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-aspli + (package + (name "r-aspli") + (version "2.6.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ASpli" version)) + (sha256 + (base32 + "1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz")))) + (properties `((upstream-name . "ASpli"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-biocgenerics + r-biocstyle + r-data-table + r-dt + r-edger + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-gviz + r-htmltools + r-igraph + r-iranges + r-limma + r-mass + r-pbmcapply + r-rsamtools + r-s4vectors + r-tidyr + r-upsetr)) + (home-page "https://bioconductor.org/packages/ASpli") + (synopsis "Analysis of alternative splicing using RNA-Seq") + (description + "@dfn{AS} (alternative splicing) is a common mechanism of +post-transcriptional gene regulation in eukaryotic organisms that expands the +functional and regulatory diversity of a single gene by generating multiple +mRNA isoforms that encode structurally and functionally distinct proteins. +ASpli is an integrative pipeline and user-friendly R package that facilitates +the analysis of changes in both annotated and novel AS events. ASpli +integrates several independent signals in order to deal with the complexity +that might arise in splicing patterns.") + ;; The authors didn't specify any GPL version in description or in the + ;; sources. + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-assessorf (package (name "r-assessorf") |