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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 78fd5a989b..4c31ffcc0d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3722,3 +3722,43 @@ variants} (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.") (license license:expat))) + +(define-public r-yapsa + (package + (name "r-yapsa") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "YAPSA" version)) + (sha256 + (base32 + "1agacimdd1m5yja2xbcsb83mns4svpxbjcsfrvm9ydqdj737i10j")))) + (properties `((upstream-name . "YAPSA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-circlize" ,r-circlize) + ("r-complexheatmap" ,r-complexheatmap) + ("r-corrplot" ,r-corrplot) + ("r-dendextend" ,r-dendextend) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-getoptlong" ,r-getoptlong) + ("r-ggplot2" ,r-ggplot2) + ("r-gridextra" ,r-gridextra) + ("r-gtrellis" ,r-gtrellis) + ("r-keggrest" ,r-keggrest) + ("r-lsei" ,r-lsei) + ("r-pmcmr" ,r-pmcmr) + ("r-reshape2" ,r-reshape2) + ("r-somaticsignatures" ,r-somaticsignatures) + ("r-variantannotation" ,r-variantannotation))) + (home-page "https://bioconductor.org/packages/YAPSA/") + (synopsis "Yet another package for signature analysis") + (description + "This package provides functions and routines useful in the analysis of +somatic signatures (cf. L. Alexandrov et al., Nature 2013). In particular, +functions to perform a signature analysis with known signatures and a +signature analysis on @dfn{stratified mutational catalogue} (SMC) are +provided.") + (license license:gpl3))) |