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| -rw-r--r-- | gnu/packages/bioconductor.scm | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7aef32286a..3a53ebdf95 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2455,6 +2455,49 @@ files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.") (license license:lgpl3))) +(define-public r-bambu + (package + (name "r-bambu") + (version "2.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "bambu" version)) + (sha256 + (base32 + "0dc2hpnykr575jbrq9whmdabknl70s2hcs6gkmkl4kpv7xfqdq6w")))) + (properties `((upstream-name . "bambu"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biocparallel + r-bsgenome + r-data-table + r-dplyr + r-genomeinfodb + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-iranges + r-rcpp + r-rcpparmadillo + r-rsamtools + r-s4vectors + r-summarizedexperiment + r-tidyr + r-xgboost)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/GoekeLab/bambu") + (synopsis + "Isoform reconstruction and quantification for long read RNA-Seq data") + (description + "This R package is for multi-sample transcript discovery and +quantification using long read RNA-Seq data. You can use bambu after read +alignment to obtain expression estimates for known and novel transcripts and +genes. The output from bambu can directly be used for visualisation and +downstream analysis, such as differential gene expression or transcript +usage.") + (license license:gpl3))) + (define-public r-biocversion (package (name "r-biocversion") |