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| -rw-r--r-- | gnu/packages/cran.scm | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index e04b3e320f..ceb84ba823 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -22440,6 +22440,49 @@ errors and possible semantic issues. It supports on the fly checking of R code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.") (license license:expat))) +(define-public r-sccore + (package + (name "r-sccore") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "sccore" version)) + (sha256 + (base32 "12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r")))) + (properties `((upstream-name . "sccore"))) + (build-system r-build-system) + (propagated-inputs + (list r-dplyr + r-ggplot2 + r-ggrepel + r-igraph + r-irlba + r-magrittr + r-matrix + r-pbmcapply + r-proc + r-rcpp + r-rcpparmadillo + r-rcppeigen + r-rcppprogress + r-rlang + r-scales + r-tibble + r-uwot + r-withr)) + (home-page "https://github.com/kharchenkolab/sccore") + (synopsis "Core utilities for single-cell RNA-Seq") + (description + "This package implements core utilities for single-cell RNA-seq data analysis. +Contained within are utility functions for working with @acronym{DE, +differential expression} matrices and count matrices, a collection of +functions for manipulating and plotting data via ggplot2, and functions to +work with cell graphs and cell embeddings. Graph-based methods include +embedding kNN cell graphs into a UMAP, collapsing vertices of each cluster in +the graph, and propagating graph labels.") + (license license:gpl3))) + (define-public r-scs (package (name "r-scs") |