diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 83ac5dcf7c..b4be8aee15 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1096,6 +1096,36 @@ experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome.") (license license:artistic2.0))) +(define-public r-cummerbund + (package + (name "r-cummerbund") + (version "2.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "cummeRbund" version)) + (sha256 + (base32 + "1fjc3bcclm4gsvw4nq6cv3a1kbrldvrxbkyfb9306708si1n4dwk")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-fastcluster", r-fastcluster) + ("r-ggplot2" ,r-ggplot2) + ("r-gviz" ,r-gviz) + ("r-plyr" ,r-plyr) + ("r-reshape2" ,r-reshape2) + ("r-rsqlite" ,r-rsqlite) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/cummeRbund/") + (synopsis "Analyze Cufflinks high-throughput sequencing data") + (description "This package allows for persistent storage, access, +exploration, and manipulation of Cufflinks high-throughput sequencing +data. In addition, provides numerous plotting functions for commonly +used visualizations.") + (license license:artistic2.0))) + (define-public r-curatedtcgadata (package (name "r-curatedtcgadata") |