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| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b9ee81a560..2ca1679f8b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -900,6 +900,39 @@ examples' of Affymetrix data, unlike the artificial examples included in the package @code{affy}.") (license license:gpl2+))) +(define-public r-curatedtcgadata + (package + (name "r-curatedtcgadata") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "curatedTCGAData" version 'experiment)) + (sha256 + (base32 + "02y6cgihmsl9b4a9mmcdjjgjp06lpz04biyvxd3n5lk5gnqd9r3y")))) + (properties + `((upstream-name . "curatedTCGAData"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationhub" ,r-annotationhub) + ("r-experimenthub" ,r-experimenthub) + ("r-hdf5array" ,r-hdf5array) + ("r-multiassayexperiment" ,r-multiassayexperiment) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://bioconductor.org/packages/curatedTCGAData/") + (synopsis "Curated data from The Cancer Genome Atlas") + (description + "This package provides publicly available data from The Cancer Genome +Atlas (TCGA) as @code{MultiAssayExperiment} objects. +@code{MultiAssayExperiment} integrates multiple assays (e.g., RNA-seq, copy +number, mutation, microRNA, protein, and others) with clinical / pathological +data. It also links assay barcodes with patient identifiers, enabling +harmonized subsetting of rows (features) and columns (patients / samples) +across the entire multi-'omics experiment.") + (license license:artistic2.0))) + ;;; Packages |