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| -rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a95fbbf3eb..c9d5755963 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2123,3 +2123,34 @@ distributions.") different normalization schemes for single-cell RNA-seq and other high-throughput analyses.") (license license:artistic2.0))) + +(define-public r-geoquery + (package + (name "r-geoquery") + (version "2.50.5") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GEOquery" version)) + (sha256 + (base32 + "074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6")))) + (properties `((upstream-name . "GEOquery"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-dplyr" ,r-dplyr) + ("r-httr" ,r-httr) + ("r-limma" ,r-limma) + ("r-magrittr" ,r-magrittr) + ("r-readr" ,r-readr) + ("r-tidyr" ,r-tidyr) + ("r-xml2" ,r-xml2))) + (home-page "https://github.com/seandavi/GEOquery/") + (synopsis "Get data from NCBI Gene Expression Omnibus (GEO)") + (description + "The NCBI Gene Expression Omnibus (GEO) is a public repository of +microarray data. Given the rich and varied nature of this resource, it is +only natural to want to apply BioConductor tools to these data. GEOquery is +the bridge between GEO and BioConductor.") + (license license:gpl2))) |