diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 58ffbff633..e5c3bd0c86 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9454,6 +9454,35 @@ microarrays or GRanges for sequencing data.") @dfn{Kyoto Encyclopedia of Genes and Genomes} (KEGG) REST server.") (license license:artistic2.0))) +(define-public r-gage + (package + (name "r-gage") + (version "2.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gage" version)) + (sha256 + (base32 + "1r14p88q3y736pkqm4pdimf1izy1xy3xgivmj3cr4dv65kjny1zk")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-graph" ,r-graph) + ("r-keggrest" ,r-keggrest))) + (home-page "http://www.biomedcentral.com/1471-2105/10/161") + (synopsis "Generally applicable gene-set enrichment for pathway analysis") + (description + "GAGE is a published method for gene set (enrichment or GSEA) or pathway +analysis. GAGE is generally applicable independent of microarray or RNA-Seq +data attributes including sample sizes, experimental designs, assay platforms, +and other types of heterogeneity. The gage package provides functions for +basic GAGE analysis, result processing and presentation. In addition, it +provides demo microarray data and commonly used gene set data based on KEGG +pathways and GO terms. These funtions and data are also useful for gene set +analysis using other methods.") + (license license:gpl2+))) + (define-public r-qvalue (package (name "r-qvalue") |