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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 81431562f2..df6c487198 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3380,6 +3380,46 @@ format. It runs quickly, in an unsupervised fashion, handles gaps, handles partial genes, and identifies translation initiation sites.") (license license:gpl3+))) +(define-public raxml + (package + (name "raxml") + (version "8.2.9") + (source + (origin + (method url-fetch) + (uri + (string-append + "https://github.com/stamatak/standard-RAxML/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1pv8p2fy67y21a9y4cm7xpvxqjwz2v4201flfjshdq1p8j52rqf7")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; There are no tests. + ;; Use 'standard' Makefile rather than SSE or AVX ones. + #:make-flags (list "-f" "Makefile.HYBRID.gcc") + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (executable "raxmlHPC-HYBRID")) + (install-file executable bin) + (symlink (string-append bin "/" executable) "raxml")) + #t))))) + (inputs + `(("openmpi" ,openmpi))) + (home-page "http://sco.h-its.org/exelixis/web/software/raxml/index.html") + (synopsis "Randomized Axelerated Maximum Likelihood phylogenetic trees") + (description + "RAxML is a tool for phylogenetic analysis and post-analysis of large +phylogenies.") + (license license:gpl2+))) + (define-public rsem (package (name "rsem") |