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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c80084f8ae..36b9087e4a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5268,6 +5268,42 @@ between experiments, StringTie's output can be processed either by the Cuffdiff or Ballgown programs.") (license license:artistic2.0))) +(define-public taxtastic + (package + (name "taxtastic") + (version "0.5.7") + ;; Versions after 0.5.4 do not appear to be distributed on PyPI so we + ;; download the package from GitHub. + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/fhcrc/taxtastic/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1s0h5y1lds1c40jhir5585ffm6yjyn8h5aqimpgv64rhqhfv56xx")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (zero? (system* "python" "-m" "unittest" "discover" "-v"))))))) + (propagated-inputs + `(("python-sqlalchemy" ,python2-sqlalchemy) + ("python-decorator" ,python2-decorator) + ("python-biopython" ,python2-biopython) + ("python-pandas" ,python2-pandas))) + (home-page "https://github.com/fhcrc/taxtastic") + (synopsis "Tools for taxonomic naming and annotation") + (description + "Taxtastic is software written in python used to build and maintain +reference packages i.e. collections of reference trees, reference alignments, +profiles, and associated taxonomic information.") + (license license:gpl3+))) + (define-public vcftools (package (name "vcftools") |