diff options
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/irods.scm | 167 |
2 files changed, 168 insertions, 0 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index f1a6d69bf6..c59fa0f5be 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -297,6 +297,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/installers.scm \ %D%/packages/ipfs.scm \ %D%/packages/irc.scm \ + %D%/packages/irods.scm \ %D%/packages/iso-codes.scm \ %D%/packages/jami.scm \ %D%/packages/java.scm \ diff --git a/gnu/packages/irods.scm b/gnu/packages/irods.scm new file mode 100644 index 0000000000..ffd8ac4b5f --- /dev/null +++ b/gnu/packages/irods.scm @@ -0,0 +1,167 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages irods) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix build-system cmake) + #:use-module (guix utils) + #:use-module (gnu packages) + #:use-module (gnu packages backup) + #:use-module (gnu packages boost) + #:use-module (gnu packages check) + #:use-module (gnu packages compression) + #:use-module (gnu packages cpp) + #:use-module (gnu packages databases) + #:use-module (gnu packages gcc) + #:use-module (gnu packages kerberos) + #:use-module (gnu packages linux) + #:use-module (gnu packages llvm) + #:use-module (gnu packages logging) + #:use-module (gnu packages networking) + #:use-module (gnu packages pretty-print) + #:use-module (gnu packages python) + #:use-module (gnu packages serialization) + #:use-module (gnu packages tls) + #:use-module (srfi srfi-1)) + +(define-public irods + (package + (name "irods") + (version "4.2.8") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/irods/irods/releases/download/" + version "/irods-" version ".tar.gz")) + (sha256 + (base32 + "0ny54c3r0j692rvbr4iibg7xgd2i7g9x8yyrw04j889bywix14rc")))) + (build-system cmake-build-system) + (arguments + `(#:configure-flags + (list + "-DCMAKE_BUILD_TYPE=Release" + (string-append "-DCMAKE_MODULE_LINKER_FLAGS=-Wl,-rpath=" + (assoc-ref %outputs "out") "/lib") + (string-append "-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-rpath=" + (assoc-ref %outputs "out") "/lib") + (string-append "-DCMAKE_EXE_LINKER_FLAGS=-Wl,-rpath=" + (assoc-ref %outputs "out") "/lib") + + ;; Configuration aborts if no generator format is set + "-DCPACK_GENERATOR=TGZ" + + ;; Configuration attempts to guess the distribution with Python. + "-DIRODS_LINUX_DISTRIBUTION_NAME=guix" + "-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1" + + (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG=" + (assoc-ref %build-inputs "clang")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME=" + (assoc-ref %build-inputs "clang-runtime")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ=" + (assoc-ref %build-inputs "cppzmq")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE=" + (assoc-ref %build-inputs "libarchive")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO=" + (assoc-ref %build-inputs "avro-cpp")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST=" + (assoc-ref %build-inputs "boost")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ=" + (assoc-ref %build-inputs "zeromq")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_JSON=" + (assoc-ref %build-inputs "json")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_CATCH2=" + (assoc-ref %build-inputs "catch2")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_NANODBC=" + (assoc-ref %build-inputs "nanodbc")) + (string-append "-DIRODS_EXTERNALS_FULLPATH_FMT=" + (assoc-ref %build-inputs "fmt"))) + + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'unset-Werror + (lambda _ + ;; -Werror kills the build due to a comparison REQUIRE(errs.size() == err->len); + ;; in unit_tests/src/test_irods_lifetime_manager.cpp + (substitute* "CMakeLists.txt" + (("-Werror") "")))) + (add-after 'unpack 'remove-FHS-and-prefix-assumptions + (lambda* (#:key inputs #:allow-other-keys) + (substitute* '("CMakeLists.txt" + "cmake/server.cmake" + "cmake/development_library.cmake" + "cmake/runtime_library.cmake") + (("usr/") "")) + (substitute* "lib/core/src/irods_default_paths.cpp" + (("path.append\\(\"usr\"\\)") "path") + (("path.remove_filename\\(\\).remove_filename\\(\\).remove_filename\\(\\)") + "path.remove_filename().remove_filename()")) + (substitute* "scripts/irods/paths.py" + (("'usr', 'lib', 'irods'") "'lib', 'irods'")) + (substitute* "scripts/irods/pypyodbc.py" + (("\"/usr/lib/libodbc.so\"") + (string-append (assoc-ref inputs "unixodbc") "/lib/libodbc.so"))))) + (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH + (lambda* (#:key inputs #:allow-other-keys) + (let ((gcc (assoc-ref inputs "gcc"))) + (setenv "CPLUS_INCLUDE_PATH" + (string-join + (cons* (string-append (assoc-ref inputs "libcxx+libcxxabi") + "/include/c++/v1") + (string-append (assoc-ref inputs "catch2") + "/include/catch2") + (string-append (assoc-ref inputs "json") + "/include/nlohmann") + ;; Hide GCC's C++ headers so that they do not interfere with + ;; the Clang headers. + (delete (string-append gcc "/include/c++") + (string-split (getenv "CPLUS_INCLUDE_PATH") + #\:))) + ":")) + (format #true + "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%" + (getenv "CPLUS_INCLUDE_PATH")))))))) + (inputs + `(("avro-cpp" ,avro-cpp-1.9-for-irods) + ("boost" ,boost-for-irods) + ("cppzmq" ,cppzmq) + ("fmt" ,fmt-for-irods) + ("json" ,json-modern-cxx) + ("libarchive" ,libarchive) + ("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi + ("linux-pam" ,linux-pam) + ("mit-krb5" ,mit-krb5) + ("nanodbc" ,nanodbc-for-irods) + ("openssl" ,openssl) + ("python" ,python-wrapper) + ("unixodbc" ,unixodbc) + ("zeromq" ,zeromq))) + (native-inputs + `(("catch2" ,catch-framework2) + ("clang" ,clang-toolchain-6) + ("clang-runtime" ,clang-runtime-6) + ("libcxx+libcxxabi" ,libcxx+libcxxabi-6))) + (home-page "https://irods.org") + (synopsis "Data management software") + (description "The Integrated Rule-Oriented Data System (iRODS) is data +management software. iRODS virtualizes data storage resources, so users can +take control of their data, regardless of where and on what device the data is +stored.") + (license license:bsd-3))) |