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-rw-r--r--HACKING10
-rw-r--r--Makefile.am3
-rw-r--r--doc/guix.texi95
-rw-r--r--gnu/bootloader/grub.scm16
-rw-r--r--gnu/local.mk12
-rw-r--r--gnu/packages/admin.scm4
-rw-r--r--gnu/packages/algebra.scm4
-rw-r--r--gnu/packages/bioinformatics.scm195
-rw-r--r--gnu/packages/ci.scm28
-rw-r--r--gnu/packages/compression.scm13
-rw-r--r--gnu/packages/connman.scm4
-rw-r--r--gnu/packages/cran.scm782
-rw-r--r--gnu/packages/crypto.scm4
-rw-r--r--gnu/packages/databases.scm5
-rw-r--r--gnu/packages/debug.scm27
-rw-r--r--gnu/packages/ebook.scm82
-rw-r--r--gnu/packages/emacs.scm32
-rw-r--r--gnu/packages/fonts.scm27
-rw-r--r--gnu/packages/freeipmi.scm4
-rw-r--r--gnu/packages/game-development.scm85
-rw-r--r--gnu/packages/games.scm100
-rw-r--r--gnu/packages/gnome.scm96
-rw-r--r--gnu/packages/gnunet.scm4
-rw-r--r--gnu/packages/gobby.scm85
-rw-r--r--gnu/packages/graphics.scm71
-rw-r--r--gnu/packages/ham-radio.scm52
-rw-r--r--gnu/packages/haskell.scm304
-rw-r--r--gnu/packages/image.scm71
-rw-r--r--gnu/packages/imagemagick.scm6
-rw-r--r--gnu/packages/irc.scm4
-rw-r--r--gnu/packages/java.scm42
-rw-r--r--gnu/packages/kde-frameworks.scm311
-rw-r--r--gnu/packages/kde.scm6
-rw-r--r--gnu/packages/libreoffice.scm4
-rw-r--r--gnu/packages/linux.scm91
-rw-r--r--gnu/packages/maths.scm11
-rw-r--r--gnu/packages/mpi.scm2
-rw-r--r--gnu/packages/music.scm59
-rw-r--r--gnu/packages/networking.scm38
-rw-r--r--gnu/packages/package-management.scm8
-rw-r--r--gnu/packages/patches/bcftools-regidx-unsigned-char.patch16
-rw-r--r--gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch28
-rw-r--r--gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch16
-rw-r--r--gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch28
-rw-r--r--gnu/packages/patches/lz4-fix-test-failures.patch136
-rw-r--r--gnu/packages/patches/newsbeuter-CVE-2017-12904.patch34
-rw-r--r--gnu/packages/patches/python-cython-fix-tests-32bit.patch27
-rw-r--r--gnu/packages/patches/python-pygit2-disable-network-tests.patch79
-rw-r--r--gnu/packages/patches/rpm-CVE-2014-8118.patch25
-rw-r--r--gnu/packages/patches/vinagre-revert-1.patch56
-rw-r--r--gnu/packages/patches/vinagre-revert-2.patch448
-rw-r--r--gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch171
-rw-r--r--gnu/packages/python.scm23
-rw-r--r--gnu/packages/rdesktop.scm108
-rw-r--r--gnu/packages/ruby.scm4
-rw-r--r--gnu/packages/shells.scm2
-rw-r--r--gnu/packages/statistics.scm17
-rw-r--r--gnu/packages/syndication.scm2
-rw-r--r--gnu/packages/tls.scm8
-rw-r--r--gnu/packages/version-control.scm52
-rw-r--r--gnu/packages/video.scm4
-rw-r--r--gnu/packages/vim.scm40
-rw-r--r--gnu/packages/web.scm85
-rw-r--r--gnu/packages/wm.scm4
-rw-r--r--gnu/packages/xorg.scm3
-rw-r--r--gnu/services/databases.scm17
-rw-r--r--gnu/services/web.scm164
-rw-r--r--gnu/system/examples/bare-bones.tmpl4
-rw-r--r--gnu/system/examples/desktop.tmpl7
-rw-r--r--gnu/system/examples/lightweight-desktop.tmpl7
-rw-r--r--gnu/tests/databases.scm10
-rw-r--r--guix/scripts/download.scm5
-rw-r--r--guix/scripts/pack.scm18
-rw-r--r--nix/libstore/build.cc8
-rw-r--r--nix/libutil/util.cc15
-rw-r--r--nix/libutil/util.hh6
-rw-r--r--tests/guix-download.sh5
77 files changed, 3645 insertions, 834 deletions
diff --git a/HACKING b/HACKING
index 20cc9ea6ea..d1a26d2d64 100644
--- a/HACKING
+++ b/HACKING
@@ -5,6 +5,7 @@
Copyright © 2012, 2013, 2014, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
Copyright © 2015, 2017 Mathieu Lirzin <mthl@gnu.org>
Copyright © 2017 Leo Famulari <leo@famulari.name>
+Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
Copying and distribution of this file, with or without modification,
are permitted in any medium without royalty provided the copyright
@@ -61,3 +62,12 @@ after two weeks, and if you’re confident, it’s OK to commit.
That last part is subject to being adjusted, allowing individuals to commit
directly on non-controversial changes on parts they’re familiar with.
+
+* Using emacs-debbugs
+
+Bug reports and patches are tracked using debbugs. If you are on emacs, you
+can use emacs-debbugs.
+
+List all open bug reports on guix-patches with
+
+C-u M-x debbugs-gnu <RET> <RET> guix-patches <RET> n y
diff --git a/Makefile.am b/Makefile.am
index 91a9113d22..9ba4ccba78 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -577,7 +577,7 @@ GUIXSD_SUPPORTED_SYSTEMS ?= x86_64-linux i686-linux
GUIXSD_VM_SYSTEMS ?= x86_64-linux
# Prefix of the GuixSD installation image file name.
-GUIXSD_IMAGE_BASE = guixsd-usb-install-$(PACKAGE_VERSION)
+GUIXSD_IMAGE_BASE = guixsd-install-$(PACKAGE_VERSION)
# Prefix of the GuixSD VM image file name.
GUIXSD_VM_IMAGE_BASE = guixsd-vm-image-$(PACKAGE_VERSION)
@@ -628,6 +628,7 @@ release: dist
for system in $(GUIXSD_SUPPORTED_SYSTEMS) ; do \
image=`$(top_builddir)/pre-inst-env \
guix system disk-image \
+ --file-system-type=iso9660 \
--system=$$system \
gnu/system/install.scm` ; \
if [ ! -f "$$image" ] ; then \
diff --git a/doc/guix.texi b/doc/guix.texi
index 94277ba396..bff0788b2f 100644
--- a/doc/guix.texi
+++ b/doc/guix.texi
@@ -216,7 +216,7 @@ Services
* X Window:: Graphical display.
* Printing Services:: Local and remote printer support.
* Desktop Services:: D-Bus and desktop services.
-* Database Services:: SQL databases.
+* Database Services:: SQL databases, key-value stores, etc.
* Mail Services:: IMAP, POP3, SMTP, and all that.
* Messaging Services:: Messaging services.
* Monitoring Services:: Monitoring services.
@@ -2630,7 +2630,7 @@ configuration triplets,, autoconf, Autoconf}).
@item --compression=@var{tool}
@itemx -C @var{tool}
Compress the resulting tarball using @var{tool}---one of @code{gzip},
-@code{bzip2}, @code{xz}, or @code{lzip}.
+@code{bzip2}, @code{xz}, @code{lzip}, or @code{none} for no compression.
@item --symlink=@var{spec}
@itemx -S @var{spec}
@@ -7465,6 +7465,7 @@ available.
* Limitations:: What you can expect.
* Hardware Considerations:: Supported hardware.
* USB Stick Installation:: Preparing the installation medium.
+* DVD Installation:: Preparing the installation medium.
* Preparing for Installation:: Networking, partitioning, etc.
* Proceeding with the Installation:: The real thing.
* Installing GuixSD in a VM:: GuixSD playground.
@@ -7554,7 +7555,7 @@ about their support in GNU/Linux.
@subsection USB Stick Installation
An installation image for USB sticks can be downloaded from
-@indicateurl{ftp://alpha.gnu.org/gnu/guix/guixsd-usb-install-@value{VERSION}.@var{system}.xz},
+@indicateurl{ftp://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.xz},
where @var{system} is one of:
@table @code
@@ -7570,8 +7571,8 @@ Make sure to download the associated @file{.sig} file and to verify the
authenticity of the image against it, along these lines:
@example
-$ wget ftp://alpha.gnu.org/gnu/guix/guixsd-usb-install-@value{VERSION}.@var{system}.xz.sig
-$ gpg --verify guixsd-usb-install-@value{VERSION}.@var{system}.xz.sig
+$ wget ftp://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.xz.sig
+$ gpg --verify guixsd-install-@value{VERSION}.@var{system}.xz.sig
@end example
If that command fails because you do not have the required public key,
@@ -7585,9 +7586,8 @@ $ gpg --keyserver pgp.mit.edu --recv-keys @value{OPENPGP-SIGNING-KEY-ID}
and rerun the @code{gpg --verify} command.
@c end duplication
-This image contains a single partition with the tools necessary for an
-installation. It is meant to be copied @emph{as is} to a large-enough
-USB stick.
+This image contains the tools necessary for an installation.
+It is meant to be copied @emph{as is} to a large-enough USB stick or DVD.
To copy the image to a USB stick, follow these steps:
@@ -7596,7 +7596,7 @@ To copy the image to a USB stick, follow these steps:
Decompress the image using the @command{xz} command:
@example
-xz -d guixsd-usb-install-@value{VERSION}.@var{system}.xz
+xz -d guixsd-install-@value{VERSION}.@var{system}.xz
@end example
@item
@@ -7605,7 +7605,7 @@ its device name. Assuming that the USB stick is known as @file{/dev/sdX},
copy the image with:
@example
-dd if=guixsd-usb-install-@value{VERSION}.x86_64 of=/dev/sdX
+dd if=guixsd-install-@value{VERSION}.x86_64 of=/dev/sdX
sync
@end example
@@ -7619,12 +7619,79 @@ UEFI boot menu, where you can choose to boot from the USB stick.
@xref{Installing GuixSD in a VM}, if, instead, you would like to install
GuixSD in a virtual machine (VM).
+@node DVD Installation
+@subsection DVD Installation
+
+An installation image for DVDs can be downloaded from
+@indicateurl{ftp://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.xz},
+where @var{system} is one of:
+
+@table @code
+@item x86_64-linux
+for a GNU/Linux system on Intel/AMD-compatible 64-bit CPUs;
+
+@item i686-linux
+for a 32-bit GNU/Linux system on Intel-compatible CPUs.
+@end table
+
+@c start duplication of authentication part from ``Binary Installation''
+Make sure to download the associated @file{.sig} file and to verify the
+authenticity of the image against it, along these lines:
+
+@example
+$ wget ftp://alpha.gnu.org/gnu/guix/guixsd-install-@value{VERSION}.@var{system}.xz.sig
+$ gpg --verify guixsd-install-@value{VERSION}.@var{system}.xz.sig
+@end example
+
+If that command fails because you do not have the required public key,
+then run this command to import it:
+
+@example
+$ gpg --keyserver pgp.mit.edu --recv-keys @value{OPENPGP-SIGNING-KEY-ID}
+@end example
+
+@noindent
+and rerun the @code{gpg --verify} command.
+@c end duplication
+
+This image contains the tools necessary for an installation.
+It is meant to be copied @emph{as is} to a large-enough USB stick or DVD.
+
+To copy the image to a DVD, follow these steps:
+
+@enumerate
+@item
+Decompress the image using the @command{xz} command:
+
+@example
+xz -d guixsd-install-@value{VERSION}.@var{system}.xz
+@end example
+
+@item
+Insert a blank DVD into your machine, and determine
+its device name. Assuming that the DVD drive is known as @file{/dev/srX},
+copy the image with:
+
+@example
+growisofs -dvd-compat -Z /dev/srX=guixsd-install-@value{VERSION}.x86_64
+@end example
+
+Access to @file{/dev/srX} usually requires root privileges.
+@end enumerate
+
+Once this is done, you should be able to reboot the system and boot from
+the DVD. The latter usually requires you to get in the BIOS or
+UEFI boot menu, where you can choose to boot from the DVD.
+
+@xref{Installing GuixSD in a VM}, if, instead, you would like to install
+GuixSD in a virtual machine (VM).
+
@node Preparing for Installation
@subsection Preparing for Installation
-Once you have successfully booted the image on the USB stick, you should
-end up with a root prompt. Several console TTYs are configured and can
-be used to run commands as root. TTY2 shows this documentation,
+Once you have successfully booted your computer using the installation medium,
+you should end up with a root prompt. Several console TTYs are configured
+and can be used to run commands as root. TTY2 shows this documentation,
browsable using the Info reader commands (@pxref{Top,,, info-stnd,
Stand-alone GNU Info}). The installation system runs the GPM mouse
daemon, which allows you to select text with the left mouse button and
@@ -7979,7 +8046,7 @@ Boot the USB installation image in an VM:
@example
qemu-system-x86_64 -m 1024 -smp 1 \
-net user -net nic,model=virtio -boot menu=on \
- -drive file=guixsd-usb-install-@value{VERSION}.@var{system} \
+ -drive file=guixsd-install-@value{VERSION}.@var{system} \
-drive file=guixsd.img
@end example
diff --git a/gnu/bootloader/grub.scm b/gnu/bootloader/grub.scm
index ef62fe059b..a9f0875f36 100644
--- a/gnu/bootloader/grub.scm
+++ b/gnu/bootloader/grub.scm
@@ -389,7 +389,20 @@ submenu \"GNU system, old configurations...\" {~%")
(unless (zero? (system* grub "--no-floppy"
"--boot-directory" install-dir
device))
- (error "failed to install GRUB")))))
+ (error "failed to install GRUB (BIOS)")))))
+
+(define install-grub-efi
+ #~(lambda (bootloader efi-dir mount-point)
+ ;; Install GRUB onto the EFI partition mounted at EFI-DIR, for the
+ ;; system whose root is mounted at MOUNT-POINT.
+ (let ((grub-install (string-append bootloader "/sbin/grub-install"))
+ (install-dir (string-append mount-point "/boot")))
+ ;; Tell 'grub-install' that there might be a LUKS-encrypted /boot or
+ ;; root partition.
+ (setenv "GRUB_ENABLE_CRYPTODISK" "y")
+ (unless (zero? (system* grub-install "--boot-directory" install-dir
+ "--efi-directory" efi-dir))
+ (error "failed to install GRUB (EFI)")))))
@@ -408,6 +421,7 @@ submenu \"GNU system, old configurations...\" {~%")
(define* grub-efi-bootloader
(bootloader
(inherit grub-bootloader)
+ (installer install-grub-efi)
(name 'grub-efi)
(package grub-efi)))
diff --git a/gnu/local.mk b/gnu/local.mk
index 961c1d3274..0c625469cf 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -196,6 +196,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/gv.scm \
%D%/packages/gxmessage.scm \
%D%/packages/haskell.scm \
+ %D%/packages/ham-radio.scm \
%D%/packages/hexedit.scm \
%D%/packages/hugs.scm \
%D%/packages/hurd.scm \
@@ -527,6 +528,7 @@ dist_patch_DATA = \
%D%/packages/patches/awesome-reproducible-png.patch \
%D%/packages/patches/azr3.patch \
%D%/packages/patches/bash-completion-directories.patch \
+ %D%/packages/patches/bcftools-regidx-unsigned-char.patch \
%D%/packages/patches/binutils-ld-new-dtags.patch \
%D%/packages/patches/binutils-loongson-workaround.patch \
%D%/packages/patches/blast+-fix-makefile.patch \
@@ -670,6 +672,9 @@ dist_patch_DATA = \
%D%/packages/patches/gobject-introspection-absolute-shlib-path.patch \
%D%/packages/patches/gobject-introspection-cc.patch \
%D%/packages/patches/gobject-introspection-girepository.patch \
+ %D%/packages/patches/graphicsmagick-CVE-2017-12935.patch \
+ %D%/packages/patches/graphicsmagick-CVE-2017-12936.patch \
+ %D%/packages/patches/graphicsmagick-CVE-2017-12937.patch \
%D%/packages/patches/graphite2-ffloat-store.patch \
%D%/packages/patches/grep-gnulib-lock.patch \
%D%/packages/patches/grep-timing-sensitive-test.patch \
@@ -822,7 +827,6 @@ dist_patch_DATA = \
%D%/packages/patches/lvm2-static-link.patch \
%D%/packages/patches/lxsession-use-gapplication.patch \
%D%/packages/patches/lxterminal-CVE-2016-10369.patch \
- %D%/packages/patches/lz4-fix-test-failures.patch \
%D%/packages/patches/make-impure-dirs.patch \
%D%/packages/patches/mars-install.patch \
%D%/packages/patches/mars-sfml-2.3.patch \
@@ -859,6 +863,7 @@ dist_patch_DATA = \
%D%/packages/patches/netsurf-system-utf8proc.patch \
%D%/packages/patches/netsurf-y2038-tests.patch \
%D%/packages/patches/netsurf-longer-test-timeout.patch \
+ %D%/packages/patches/newsbeuter-CVE-2017-12904.patch \
%D%/packages/patches/ngircd-handle-zombies.patch \
%D%/packages/patches/ninja-zero-mtime.patch \
%D%/packages/patches/node-9077.patch \
@@ -953,7 +958,6 @@ dist_patch_DATA = \
%D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \
%D%/packages/patches/python-statsmodels-fix-tests.patch \
%D%/packages/patches/python-configobj-setuptools.patch \
- %D%/packages/patches/python-cython-fix-tests-32bit.patch \
%D%/packages/patches/python-faker-fix-build-32bit.patch \
%D%/packages/patches/python-pandas-skip-failing-tests.patch \
%D%/packages/patches/python-paste-remove-website-test.patch \
@@ -990,7 +994,6 @@ dist_patch_DATA = \
%D%/packages/patches/reptyr-fix-gcc-7.patch \
%D%/packages/patches/ripperx-missing-file.patch \
%D%/packages/patches/rpcbind-CVE-2017-8779.patch \
- %D%/packages/patches/rpm-CVE-2014-8118.patch \
%D%/packages/patches/rsem-makefile.patch \
%D%/packages/patches/ruby-concurrent-ignore-broken-test.patch \
%D%/packages/patches/ruby-concurrent-test-arm.patch \
@@ -1060,6 +1063,8 @@ dist_patch_DATA = \
%D%/packages/patches/util-linux-tests.patch \
%D%/packages/patches/upower-builddir.patch \
%D%/packages/patches/valgrind-enable-arm.patch \
+ %D%/packages/patches/vinagre-revert-1.patch \
+ %D%/packages/patches/vinagre-revert-2.patch \
%D%/packages/patches/virglrenderer-CVE-2017-6386.patch \
%D%/packages/patches/vorbis-tools-CVE-2014-9638+CVE-2014-9639.patch \
%D%/packages/patches/vorbis-tools-CVE-2014-9640.patch \
@@ -1091,6 +1096,7 @@ dist_patch_DATA = \
%D%/packages/patches/xf86-video-geode-glibc-2.20.patch \
%D%/packages/patches/xf86-video-i128-remove-mibstore.patch \
%D%/packages/patches/xf86-video-mach64-glibc-2.20.patch \
+ %D%/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch \
%D%/packages/patches/xf86-video-tga-remove-mibstore.patch \
%D%/packages/patches/xfce4-panel-plugins.patch \
%D%/packages/patches/xfce4-session-fix-xflock4.patch \
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index a7e79da3ff..fb7fcd6c4b 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -1793,14 +1793,14 @@ highly portable. Great for heterogeneous networks.")
(define-public cbatticon
(package
(name "cbatticon")
- (version "1.6.5")
+ (version "1.6.6")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/valr/"
name "/archive/" version ".tar.gz"))
(sha256
(base32
- "0xzz1faqgm57bwlkw6sjdfbckf5hck81879zbfk18p7xn9vhvixv"))
+ "1rxlrwd817f2zl4fsc5ha43wjzfidq3yyagq4lgyi150qg36svv3"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system gnu-build-system)
(arguments
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index c57c703700..74ef7dc285 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -207,7 +207,7 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.")
(define-public giac-xcas
(package
(name "giac-xcas")
- (version "1.2.3-51")
+ (version "1.2.3-57")
(source (origin
(method url-fetch)
;; "~parisse/giac" is not used because the maintainer regularly
@@ -219,7 +219,7 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.")
"source/giac_" version ".tar.gz"))
(sha256
(base32
- "1w7d4sdjbvqiibnfkhrqy9np3smsysilfba9pry3q1qn5g5y6nrp"))))
+ "0a7c1r2rgsin671qy98yvwgkg6a81d0pp0p4p7sydhrfi1k9xpr1"))))
(build-system gnu-build-system)
(arguments
`(#:phases
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 87cf164c1a..c5157046ab 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -311,6 +311,7 @@ BAM files.")
(sha256
(base32
"0093hkkvxmbwfaa7905s6185jymynvg42kq6sxv7fili11l5mxwz"))
+ (patches (search-patches "bcftools-regidx-unsigned-char.patch"))
(modules '((guix build utils)))
(snippet
;; Delete bundled htslib.
@@ -2114,7 +2115,7 @@ identify enrichments with functional annotations of the genome.")
(define-public diamond
(package
(name "diamond")
- (version "0.9.9")
+ (version "0.9.10")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2123,7 +2124,7 @@ identify enrichments with functional annotations of the genome.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "04i03046g3l2vk9722z47r1p7j415g97vvz6d76ywmbawyiihcb1"))))
+ "13qqzwg54n5dqh8pm5n3v8x6gqbczzakphwwjix63qv60hcd5bqd"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; no "check" target
@@ -8315,6 +8316,30 @@ package, and for letting R applications work on datasets that are larger than
the available RAM.")
(license license:artistic2.0)))
+(define-public r-annotationfilter
+ (package
+ (name "r-annotationfilter")
+ (version "1.0.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationFilter" version))
+ (sha256
+ (base32
+ "0pxvswjzwibdfmrkdragxmzcl844z73pmkn82z92wahwa6gjfyi7"))))
+ (properties
+ `((upstream-name . "AnnotationFilter")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-lazyeval" ,r-lazyeval)))
+ (home-page "https://github.com/Bioconductor/AnnotationFilter")
+ (synopsis "Facilities for filtering Bioconductor annotation resources")
+ (description
+ "This package provides classes and other infrastructure to implement
+filters for manipulating Bioconductor annotation resources. The filters are
+used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.")
+ (license license:artistic2.0)))
+
(define-public emboss
(package
(name "emboss")
@@ -8672,6 +8697,52 @@ CopywriteR constitutes a widely applicable alternative to available copy
number detection tools.")
(license license:gpl2)))
+(define-public r-methylkit
+ (package
+ (name "r-methylkit")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "methylKit" version))
+ (sha256
+ (base32
+ "02acdjf6jl0c1glymin84pdna4farn4vv0gb6107d9iqz3y3gkmm"))))
+ (properties `((upstream-name . "methylKit")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-emdbook" ,r-emdbook)
+ ("r-fastseg" ,r-fastseg)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-gtools" ,r-gtools)
+ ("r-iranges" ,r-iranges)
+ ("r-kernsmooth" ,r-kernsmooth)
+ ("r-limma" ,r-limma)
+ ("r-mclust" ,r-mclust)
+ ("r-qvalue" ,r-qvalue)
+ ("r-r-utils" ,r-r-utils)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhtslib" ,r-rhtslib)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "http://code.google.com/p/methylkit/")
+ (synopsis
+ "DNA methylation analysis from high-throughput bisulfite sequencing results")
+ (description
+ "MethylKit is an R package for DNA methylation analysis and annotation
+from high-throughput bisulfite sequencing. The package is designed to deal
+with sequencing data from @dfn{Reduced representation bisulfite
+sequencing} (RRBS) and its variants, but also target-capture methods and whole
+genome bisulfite sequencing. It also has functions to analyze base-pair
+resolution 5hmC data from experimental protocols such as oxBS-Seq and
+TAB-Seq.")
+ (license license:artistic2.0)))
+
(define-public r-sva
(package
(name "r-sva")
@@ -8816,7 +8887,8 @@ proteomics packages.")
(properties `((upstream-name . "mzR")))
(build-system r-build-system)
(inputs
- `(("netcdf" ,netcdf)))
+ `(("boost" ,boost)
+ ("netcdf" ,netcdf)))
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
@@ -9234,6 +9306,123 @@ distributional differences between lanes (e.g., sequencing depth):
global-scaling and full-quantile normalization.")
(license license:artistic2.0)))
+(define-public r-interactivedisplaybase
+ (package
+ (name "r-interactivedisplaybase")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "interactiveDisplayBase" version))
+ (sha256
+ (base32
+ "12f6ap4bl3h2iwwhg8i3r9a7yyd28d8i5lb3fj1vnfvjs762r7r7"))))
+ (properties
+ `((upstream-name . "interactiveDisplayBase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-shiny" ,r-shiny)))
+ (home-page "http://bioconductor.org/packages/interactiveDisplayBase")
+ (synopsis "Base package for web displays of Bioconductor objects")
+ (description
+ "This package contains the basic methods needed to generate interactive
+Shiny-based display methods for Bioconductor objects.")
+ (license license:artistic2.0)))
+
+(define-public r-annotationhub
+ (package
+ (name "r-annotationhub")
+ (version "2.8.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationHub" version))
+ (sha256
+ (base32
+ "1nh5si3j1nv37jcg4260582ayjg18851np47cskrm54prnvhwd9r"))))
+ (properties `((upstream-name . "AnnotationHub")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocinstaller" ,r-biocinstaller)
+ ("r-httr" ,r-httr)
+ ("r-interactivedisplaybase" ,r-interactivedisplaybase)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-yaml" ,r-yaml)))
+ (home-page "http://bioconductor.org/packages/AnnotationHub")
+ (synopsis "Client to access AnnotationHub resources")
+ (description
+ "This package provides a client for the Bioconductor AnnotationHub web
+resource. The AnnotationHub web resource provides a central location where
+genomic files (e.g. VCF, bed, wig) and other resources from standard
+locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
+metadata about each resource, e.g., a textual description, tags, and date of
+modification. The client creates and manages a local cache of files retrieved
+by the user, helping with quick and reproducible access.")
+ (license license:artistic2.0)))
+
+(define-public r-fastseg
+ (package
+ (name "r-fastseg")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fastseg" version))
+ (sha256
+ (base32
+ "083wiz03q9mynwchs9frlpp6c84dncri5ncibx6h82p228cpja6h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://www.bioinf.jku.at/software/fastseg/index.html")
+ (synopsis "Fast segmentation algorithm for genetic sequencing data")
+ (description
+ "Fastseg implements a very fast and efficient segmentation algorithm.
+It can segment data from DNA microarrays and data from next generation
+sequencing for example to detect copy number segments. Further it can segment
+data from RNA microarrays like tiling arrays to identify transcripts. Most
+generally, it can segment data given as a matrix or as a vector. Various data
+formats can be used as input to fastseg like expression set objects for
+microarrays or GRanges for sequencing data.")
+ (license license:lgpl2.0+)))
+
+(define-public r-qvalue
+ (package
+ (name "r-qvalue")
+ (version "2.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "qvalue" version))
+ (sha256
+ (base32
+ "1dxdwa767a9r8n61r272ypi09qblcdfpzzwkmri74y5mbp1r3y4i"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-reshape2" ,r-reshape2)))
+ (home-page "http://github.com/jdstorey/qvalue")
+ (synopsis "Q-value estimation for false discovery rate control")
+ (description
+ "This package takes a list of p-values resulting from the simultaneous
+testing of many hypotheses and estimates their q-values and local @dfn{false
+discovery rate} (FDR) values. The q-value of a test measures the proportion
+of false positives incurred when that particular test is called significant.
+The local FDR measures the posterior probability the null hypothesis is true
+given the test's p-value. Various plots are automatically generated, allowing
+one to make sensible significance cut-offs. The software can be applied to
+problems in genomics, brain imaging, astrophysics, and data mining.")
+ ;; Any version of the LGPL.
+ (license license:lgpl3+)))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm
index e2cb712bf1..d936c8fa10 100644
--- a/gnu/packages/ci.scm
+++ b/gnu/packages/ci.scm
@@ -3,6 +3,7 @@
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2016, 2017 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -186,8 +187,8 @@ their dependencies.")
(license l:gpl3+))))
(define-public cuirass
- (let ((commit "870e8d6ad3415ac61c52e57095fcc6164023a0fc")
- (revision "6"))
+ (let ((commit "6f85bc04f31ae5853ceaa0bb3e1dedfe8412a189")
+ (revision "7"))
(package
(name "cuirass")
(version (string-append "0.0.1-" revision "." (string-take commit 7)))
@@ -199,7 +200,7 @@ their dependencies.")
(file-name (string-append name "-" version))
(sha256
(base32
- "0lp5a5p42k7lml15lbmmd7az9i0gw5kips3sh3awd2z79h0w2knw"))))
+ "1dglsa23z21m1s70420ar73qmg39fvdvwlz9xjz6lfp5s9mgzx15"))))
(build-system gnu-build-system)
(arguments
'(#:modules ((guix build utils)
@@ -223,7 +224,8 @@ their dependencies.")
(let* ((out (assoc-ref outputs "out"))
(json (assoc-ref inputs "guile-json"))
(sqlite (assoc-ref inputs "guile-sqlite3"))
- (git (assoc-ref inputs "git"))
+ (git (assoc-ref inputs "guile-git"))
+ (bytes (assoc-ref inputs "guile-bytestructures"))
(guix (assoc-ref inputs "guix"))
(guile (assoc-ref %build-inputs "guile"))
(effective (read-line
@@ -232,15 +234,18 @@ their dependencies.")
"-c" "(display (effective-version))")))
(mods (string-append json "/share/guile/site/"
effective ":"
+ git "/share/guile/site/"
+ effective ":"
+ bytes "/share/guile/site/"
+ effective ":"
sqlite "/share/guile/site/"
effective ":"
guix "/share/guile/site/"
effective)))
- ;; Make sure 'cuirass' can find the 'git' and 'evaluate'
- ;; commands, as well as the relevant Guile modules.
+ ;; Make sure 'cuirass' can find the 'evaluate' command, as
+ ;; well as the relevant Guile modules.
(wrap-program (string-append out "/bin/cuirass")
- `("PATH" ":" prefix (,(string-append out "/bin")
- ,(string-append git "/bin")))
+ `("PATH" ":" prefix (,(string-append out "/bin")))
`("GUILE_LOAD_PATH" ":" prefix (,mods))
`("GUILE_LOAD_COMPILED_PATH" ":" prefix (,mods)))
#t))))))
@@ -248,8 +253,11 @@ their dependencies.")
`(("guile" ,guile-2.2)
("guile-json" ,guile-json)
("guile-sqlite3" ,guile-sqlite3)
- ("guix" ,guix)
- ("git" ,git)))
+ ("guile-git" ,guile-git)
+ ;; FIXME: this is propagated by "guile-git", but it needs to be among
+ ;; the inputs to add it to GUILE_LOAD_PATH.
+ ("guile-bytestructures" ,guile-bytestructures)
+ ("guix" ,guix)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index f2989d9c15..ebb4e407f1 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -606,14 +606,14 @@ sfArk file format to the uncompressed sf2 format.")
(define-public libmspack
(package
(name "libmspack")
- (version "0.5")
+ (version "0.6")
(source
(origin
(method url-fetch)
(uri (string-append "http://www.cabextract.org.uk/libmspack/libmspack-"
version "alpha.tar.gz"))
(sha256
- (base32 "04413hynb7zizxnkgy9riik3612dwirkpr6fcjrnfl2za9sz4rw9"))))
+ (base32 "08gr2pcinas6bdqz3k0286g5cnksmcx813skmdwyca6bmj1fxnqy"))))
(build-system gnu-build-system)
(home-page "http://www.cabextract.org.uk/libmspack/")
(synopsis "Compression tools for some formats used by Microsoft")
@@ -702,16 +702,15 @@ writing of compressed data created with the zlib and bzip2 libraries.")
(define-public lz4
(package
(name "lz4")
- (version "1.7.5")
+ (version "1.8.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/lz4/lz4/archive/"
"v" version ".tar.gz"))
- (patches (search-patches "lz4-fix-test-failures.patch"))
(sha256
(base32
- "0zkykqqjfa1q3ji0qmb1ml3l9063qqfh99agyj3cnb02cg6wm401"))
+ "1xnckwwah74gl98gylf1b00vk4km1d8sgd8865h07ccvgbm8591c"))
(file-name (string-append name "-" version ".tar.gz"))))
(build-system gnu-build-system)
(native-inputs `(("valgrind" ,valgrind))) ; for tests
@@ -722,14 +721,14 @@ writing of compressed data created with the zlib and bzip2 libraries.")
(string-append "PREFIX=" (assoc-ref %outputs "out")))
#:phases (modify-phases %standard-phases
(delete 'configure)))) ; no configure script
- (home-page "https://github.com/lz4/lz4")
+ (home-page "http://www.lz4.org")
(synopsis "Compression algorithm focused on speed")
(description "LZ4 is a lossless compression algorithm, providing
compression speed at 400 MB/s per core (0.16 Bytes/cycle). It also features an
extremely fast decoder, with speed in multiple GB/s per core (0.71 Bytes/cycle).
A high compression derivative, called LZ4_HC, is also provided. It trades CPU
time for compression ratio.")
- ;; The libraries (lz4, lz4hc, and xxhash are BSD licenced. The command
+ ;; The libraries (lz4, lz4hc, and xxhash) are BSD licenced. The command
;; line interface programs (lz4, fullbench, fuzzer, datagen) are GPL2+.
(license (list license:bsd-2 license:gpl2+))))
diff --git a/gnu/packages/connman.scm b/gnu/packages/connman.scm
index 8f567fa61b..a2a5556fb8 100644
--- a/gnu/packages/connman.scm
+++ b/gnu/packages/connman.scm
@@ -42,7 +42,7 @@
(define-public connman
(package
(name "connman")
- (version "1.34")
+ (version "1.35")
(source
(origin
(method url-fetch)
@@ -50,7 +50,7 @@
name "-" version ".tar.xz"))
(sha256
(base32
- "07n71wcy1c4cc01ca4dl9k1jpdqr5nsyr33dqf7k87wwfa681859"))))
+ "1apj5j25kj7v1bsfv3nh54aiq873nfrsjfbj85p5qm3ihfwxxmv6"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index feae801116..bb7576352f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -21,7 +21,12 @@
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
- #:use-module (guix build-system r))
+ #:use-module (guix build-system r)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages statistics)
+ #:use-module (gnu packages web))
(define-public r-colorspace
(package
@@ -148,3 +153,778 @@ where the bound function accepts additional arguments.")
"This package provides an easy way to fill an environment with active
bindings that call a C++ function.")
(license license:expat)))
+
+(define-public r-auc
+ (package
+ (name "r-auc")
+ (version "0.3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "AUC" version))
+ (sha256
+ (base32
+ "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"))))
+ (properties `((upstream-name . "AUC")))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/AUC")
+ (synopsis "Compute the area under the curve of selected measures")
+ (description
+ "This package includes functions to compute the area under the curve of
+selected measures: the area under the sensitivity curve (AUSEC), the area
+under the specificity curve (AUSPC), the area under the accuracy
+curve (AUACC), and the area under the receiver operating characteristic
+curve (AUROC). The curves can also be visualized. Support for partial areas
+is provided.")
+ (license license:gpl2+)))
+
+(define-public r-calibrate
+ (package
+ (name "r-calibrate")
+ (version "1.7.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "calibrate" version))
+ (sha256
+ (base32
+ "010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)))
+ (home-page "http://cran.r-project.org/web/packages/calibrate")
+ (synopsis "Calibration of scatterplot and biplot axes")
+ (description
+ "This is a package for drawing calibrated scales with tick marks
+on (non-orthogonal) variable vectors in scatterplots and biplots.")
+ (license license:gpl2)))
+
+(define-public r-shape
+ (package
+ (name "r-shape")
+ (version "1.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "shape" version))
+ (sha256
+ (base32
+ "0yk3cmsa57svcvbnm21pyr0s0qbhnllka8nmsg4yb41frjlqph66"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/shape")
+ (synopsis "Functions for plotting graphical shapes")
+ (description
+ "This package provides functions for plotting graphical shapes such as
+ellipses, circles, cylinders, arrows, ...")
+ (license license:gpl3+)))
+
+(define-public r-globaloptions
+ (package
+ (name "r-globaloptions")
+ (version "0.0.12")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "GlobalOptions" version))
+ (sha256
+ (base32
+ "1abpc03cfvazbwj2sx6qgngs5pgpzysvxkana20hyvb4n7ws77f0"))))
+ (properties `((upstream-name . "GlobalOptions")))
+ (build-system r-build-system)
+ (home-page "https://github.com/jokergoo/GlobalOptions")
+ (synopsis "Generate functions to get or set global options")
+ (description
+ "This package provides more controls on the option values such as
+validation and filtering on the values, making options invisible or private.")
+ (license license:gpl2+)))
+
+(define-public r-circlize
+ (package
+ (name "r-circlize")
+ (version "0.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "circlize" version))
+ (sha256
+ (base32
+ "0p1zx1aawkblz48kzzfn5w1k3lbwv9wrk1k5gcfjrr2b4sz1pp5b"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-colorspace" ,r-colorspace)
+ ("r-globaloptions" ,r-globaloptions)
+ ("r-shape" ,r-shape)))
+ (home-page "https://github.com/jokergoo/circlize")
+ (synopsis "Circular visualization")
+ (description
+ "Circular layout is an efficient way for the visualization of huge
+amounts of information. This package provides an implementation of circular
+layout generation in R as well as an enhancement of available software. The
+flexibility of the package is based on the usage of low-level graphics
+functions such that self-defined high-level graphics can be easily implemented
+by users for specific purposes. Together with the seamless connection between
+the powerful computational and visual environment in R, it gives users more
+convenience and freedom to design figures for better understanding complex
+patterns behind multiple dimensional data.")
+ (license license:gpl2+)))
+
+(define-public r-powerlaw
+ (package
+ (name "r-powerlaw")
+ (version "0.70.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "poweRlaw" version))
+ (sha256
+ (base32
+ "1p2la3hslxq2xa8jkwvci6zcpn47cvyr9xqd5agp1riwwp2xw5gh"))))
+ (properties `((upstream-name . "poweRlaw")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-vgam" ,r-vgam)))
+ (home-page "https://github.com/csgillespie/poweRlaw")
+ (synopsis "Tools for the analysis of heavy tailed distributions")
+ (description
+ "This package provides an implementation of maximum likelihood estimators
+for a variety of heavy tailed distributions, including both the discrete and
+continuous power law distributions. Additionally, a goodness-of-fit based
+approach is used to estimate the lower cut-off for the scaling region.")
+ ;; Any of these GPL versions.
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-compare
+ (package
+ (name "r-compare")
+ (version "0.2-6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "compare" version))
+ (sha256
+ (base32
+ "0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/compare")
+ (synopsis "Comparing objects for differences")
+ (description
+ "This package provides functions to compare a model object to a
+comparison object. If the objects are not identical, the functions can be
+instructed to explore various modifications of the objects (e.g., sorting
+rows, dropping names) to see if the modified versions are identical.")
+ (license license:gpl2+)))
+
+(define-public r-dendextend
+ (package
+ (name "r-dendextend")
+ (version "1.5.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "dendextend" version))
+ (sha256
+ (base32
+ "04jz58apibfrkjcrdmw2hmsav6qpb5cs6qdai81k1v1iznfcya42"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-fpc" ,r-fpc)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-magrittr" ,r-magrittr)
+ ("r-viridis" ,r-viridis)
+ ("r-whisker" ,r-whisker)))
+ (home-page "https://cran.r-project.org/web/packages/dendextend")
+ (synopsis "Extending 'dendrogram' functionality in R")
+ (description
+ "This package offers a set of functions for extending @code{dendrogram}
+objects in R, letting you visualize and compare trees of hierarchical
+clusterings. You can adjust a tree's graphical parameters (the color, size,
+type, etc of its branches, nodes and labels) and visually and statistically
+compare different dendrograms to one another.")
+ ;; Any of these versions
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-getoptlong
+ (package
+ (name "r-getoptlong")
+ (version "0.1.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "GetoptLong" version))
+ (sha256
+ (base32
+ "1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"))))
+ (properties `((upstream-name . "GetoptLong")))
+ (build-system r-build-system)
+ (inputs
+ `(("perl" ,perl)))
+ (propagated-inputs
+ `(("r-globaloptions" ,r-globaloptions)
+ ("r-rjson" ,r-rjson)))
+ (home-page "https://github.com/jokergoo/GetoptLong")
+ (synopsis "Parsing command-line arguments and variable interpolation")
+ (description
+ "This is yet another command-line argument parser which wraps the
+powerful Perl module @code{Getopt::Long} and with some adaptation for easier
+use in R. It also provides a simple way for variable interpolation in R.")
+ (license license:gpl2+)))
+
+(define-public r-fastmatch
+ (package
+ (name "r-fastmatch")
+ (version "1.1-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "fastmatch" version))
+ (sha256
+ (base32
+ "0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"))))
+ (build-system r-build-system)
+ (home-page "http://www.rforge.net/fastmatch")
+ (synopsis "Fast match function")
+ (description
+ "This package provides a fast @code{match} replacement for cases that
+require repeated look-ups. It is slightly faster that R's built-in
+@code{match} function on first match against a table, but extremely fast on
+any subsequent lookup as it keeps the hash table in memory.")
+ (license license:gpl2)))
+
+(define-public r-ff
+ (package
+ (name "r-ff")
+ (version "2.2-13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ff" version))
+ (sha256
+ (base32
+ "1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-bit" ,r-bit)))
+ (home-page "http://ff.r-forge.r-project.org/")
+ (synopsis "Memory-efficient storage of large data on disk and access functions")
+ (description
+ "This package provides data structures that are stored on disk but
+behave (almost) as if they were in RAM by transparently mapping only a section
+in main memory.")
+ (license license:gpl2)))
+
+(define-public r-ffbase
+ (package
+ (name "r-ffbase")
+ (version "0.12.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ffbase" version))
+ (sha256
+ (base32
+ "1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bit" ,r-bit)
+ ("r-fastmatch" ,r-fastmatch)
+ ("r-ff" ,r-ff)))
+ (home-page "http://github.com/edwindj/ffbase")
+ (synopsis "Basic statistical functions for package 'ff'")
+ (description
+ "This package extends the out of memory vectors of @code{ff} with
+statistical functions and other utilities to ease their usage.")
+ (license license:gpl3)))
+
+(define-public r-prettyunits
+ (package
+ (name "r-prettyunits")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "prettyunits" version))
+ (sha256
+ (base32
+ "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-assertthat" ,r-assertthat)
+ ("r-magrittr" ,r-magrittr)))
+ (home-page "https://github.com/gaborcsardi/prettyunits")
+ (synopsis "Pretty, human readable formatting of quantities")
+ (description
+ "This package provides tools for pretty, human readable formatting of
+quantities.")
+ (license license:expat)))
+
+(define-public r-reshape
+ (package
+ (name "r-reshape")
+ (version "0.8.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "reshape" version))
+ (sha256
+ (base32
+ "1f1ngalc22knhdm9djv1m6abnjqpv1frdzxfkpakhph2l67bk7fq"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-plyr" ,r-plyr)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "http://had.co.nz/reshape")
+ (synopsis "Flexibly reshape data")
+ (description
+ "Flexibly restructure and aggregate data using just two functions:
+@code{melt} and @code{cast}. This package provides them.")
+ (license license:expat)))
+
+(define-public r-progress
+ (package
+ (name "r-progress")
+ (version "1.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "progress" version))
+ (sha256
+ (base32
+ "1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-prettyunits" ,r-prettyunits)
+ ("r-r6" ,r-r6)))
+ (home-page "https://github.com/gaborcsardi/progress")
+ (synopsis "Terminal progress bars")
+ (description
+ "This package provides configurable progress bars. They may include
+percentage, elapsed time, and/or the estimated completion time. They work in
+terminals, in Emacs ESS, RStudio, Windows Rgui, and the macOS R.app. The
+package also provides a C++ API, that works with or without Rcpp.")
+ (license license:expat)))
+
+(define-public r-ggally
+ (package
+ (name "r-ggally")
+ (version "1.3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "GGally" version))
+ (sha256
+ (base32
+ "12ddab0nd0f9c7bb6cx3c22mliyvc8xsxv26aqz3cvfbla8crp3b"))))
+ (properties `((upstream-name . "GGally")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-gtable" ,r-gtable)
+ ("r-plyr" ,r-plyr)
+ ("r-progress" ,r-progress)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-reshape" ,r-reshape)))
+ (home-page "https://ggobi.github.io/ggally")
+ (synopsis "Extension to ggplot2")
+ (description
+ "The R package ggplot2 is a plotting system based on the grammar of
+graphics. GGally extends ggplot2 by adding several functions to reduce the
+complexity of combining geometric objects with transformed data. Some of
+these functions include a pairwise plot matrix, a two group pairwise plot
+matrix, a parallel coordinates plot, a survival plot, and several functions to
+plot networks.")
+ (license license:gpl2+)))
+
+(define-public r-proxy
+ (package
+ (name "r-proxy")
+ (version "0.4-17")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "proxy" version))
+ (sha256
+ (base32
+ "0bg1fn96qrj8whmnl7c3gv244ksm2ykxxsd0zrmw4lb6465pizl2"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/proxy")
+ (synopsis "Distance and similarity measures")
+ (description
+ "This package provides an extensible framework for the efficient
+calculation of auto- and cross-proximities, along with implementations of the
+most popular ones.")
+ (license license:gpl2)))
+
+(define-public r-sp
+ (package
+ (name "r-sp")
+ (version "1.2-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "sp" version))
+ (sha256
+ (base32
+ "0crba3j00mb2xv2yk60rpa57gn97xq4ql3a6p9cjzqjxzv2cknk2"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lattice" ,r-lattice)))
+ (home-page "http://cran.r-project.org/web/packages/sp")
+ (synopsis "Classes and methods for spatial data")
+ (description
+ "This package provides classes and methods for spatial data; the classes
+document where the spatial location information resides, for 2D or 3D data.
+Utility functions are provided, e.g. for plotting data as maps, spatial
+selection, as well as methods for retrieving coordinates, for subsetting,
+print, summary, etc.")
+ (license license:gpl2+)))
+
+(define-public r-rmtstat
+ (package
+ (name "r-rmtstat")
+ (version "0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RMTstat" version))
+ (sha256
+ (base32
+ "1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"))))
+ (properties `((upstream-name . "RMTstat")))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/RMTstat")
+ (synopsis "Distributions, statistics and tests derived from random matrix theory")
+ (description
+ "This package provides functions for working with the Tracy-Widom laws
+and other distributions related to the eigenvalues of large Wishart
+matrices.")
+ (license license:bsd-3)))
+
+(define-public r-lmoments
+ (package
+ (name "r-lmoments")
+ (version "1.2-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Lmoments" version))
+ (sha256
+ (base32
+ "13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"))))
+ (properties `((upstream-name . "Lmoments")))
+ (build-system r-build-system)
+ (home-page "http://www.tilastotiede.fi/juha_karvanen.html")
+ (synopsis "L-moments and quantile mixtures")
+ (description
+ "This package contains functions to estimate L-moments and trimmed
+L-moments from the data. It also contains functions to estimate the
+parameters of the normal polynomial quantile mixture and the Cauchy polynomial
+quantile mixture from L-moments and trimmed L-moments.")
+ (license license:gpl2)))
+
+(define-public r-distillery
+ (package
+ (name "r-distillery")
+ (version "1.0-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "distillery" version))
+ (sha256
+ (base32
+ "12m4cacvc18fd3aayc8iih5q6bwsmvf29b55fwp7vs8wp1h8nd8c"))))
+ (build-system r-build-system)
+ (home-page "http://www.ral.ucar.edu/staff/ericg")
+ (synopsis "Functions for confidence intervals and object information")
+ (description
+ "This package provides some very simple method functions for confidence
+interval calculation and to distill pertinent information from a potentially
+complex object; primarily used in common with the packages extRemes and
+SpatialVx.")
+ (license license:gpl2+)))
+
+(define-public r-extremes
+ (package
+ (name "r-extremes")
+ (version "2.0-8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "extRemes" version))
+ (sha256
+ (base32
+ "0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"))))
+ (properties `((upstream-name . "extRemes")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-car" ,r-car)
+ ("r-distillery" ,r-distillery)
+ ("r-lmoments" ,r-lmoments)))
+ (home-page "http://www.assessment.ucar.edu/toolkit/")
+ (synopsis "Extreme value analysis")
+ (description
+ "ExtRemes is a suite of functions for carrying out analyses on the
+extreme values of a process of interest; be they block maxima over long blocks
+or excesses over a high threshold.")
+ (license license:gpl2+)))
+
+(define-public r-lmtest
+ (package
+ (name "r-lmtest")
+ (version "0.9-35")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "lmtest" version))
+ (sha256
+ (base32
+ "107br1l7p52wxvazs031f4h5ryply97qywg9dzrkw4ydnvqq4j9g"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-zoo" ,r-zoo)))
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "http://cran.r-project.org/web/packages/lmtest")
+ (synopsis "Testing linear regression models")
+ (description
+ "This package provides a collection of tests, data sets, and examples for
+diagnostic checking in linear regression models. Furthermore, some generic
+tools for inference in parametric models are provided.")
+ ;; Either version is okay
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-inline
+ (package
+ (name "r-inline")
+ (version "0.3.14")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "inline" version))
+ (sha256
+ (base32
+ "0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"))))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/inline")
+ (synopsis "Functions to inline C, C++, Fortran function calls from R")
+ (description
+ "This package provides functionality to dynamically define R functions
+and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and
+@code{.Call} calling conventions.")
+ ;; Any version of the LGPL.
+ (license license:lgpl3+)))
+
+(define-public r-bbmle
+ (package
+ (name "r-bbmle")
+ (version "1.0.19")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bbmle" version))
+ (sha256
+ (base32
+ "014h6mw16gv4acs2p78dy7lla7s428n633aybsb1mbi6250dg0p8"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lattice" ,r-lattice)
+ ("r-mass" ,r-mass)
+ ("r-numderiv" ,r-numderiv)))
+ (home-page "http://cran.r-project.org/web/packages/bbmle")
+ (synopsis "Tools for General Maximum Likelihood Estimation")
+ (description
+ "Methods and functions for fitting maximum likelihood models in R. This
+package modifies and extends the @code{mle} classes in the @code{stats4}
+package.")
+ ;; Any version of the GPL
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-emdbook
+ (package
+ (name "r-emdbook")
+ (version "1.3.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "emdbook" version))
+ (sha256
+ (base32
+ "09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bbmle" ,r-bbmle)
+ ("r-coda" ,r-coda)
+ ("r-lattice" ,r-lattice)
+ ("r-mass" ,r-mass)
+ ("r-plyr" ,r-plyr)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "http://www.math.mcmaster.ca/bolker/emdbook")
+ (synopsis "Support functions and data for \"Ecological Models and Data\"")
+ (description
+ "This package provides auxiliary functions and data sets for \"Ecological
+Models and Data\", a book presenting maximum likelihood estimation and related
+topics for ecologists (ISBN 978-0-691-12522-0).")
+ ;; Any GPL version
+ (license (list license:gpl2 license:gpl3))))
+
+(define-public r-lpsolve
+ (package
+ (name "r-lpsolve")
+ (version "5.6.13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "lpSolve" version))
+ (sha256
+ (base32
+ "13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"))))
+ (properties `((upstream-name . "lpSolve")))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/lpSolve")
+ (synopsis "R interface to Lp_solve to solve linear/integer programs")
+ (description
+ "Lp_solve is software for solving linear, integer and mixed integer
+programs. This implementation supplies a \"wrapper\" function in C and some R
+functions that solve general linear/integer problems, assignment problems, and
+transportation problems.")
+ (license license:lgpl2.0)))
+
+(define-public r-limsolve
+ (package
+ (name "r-limsolve")
+ (version "1.5.5.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "limSolve" version))
+ (sha256
+ (base32
+ "1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"))))
+ (properties `((upstream-name . "limSolve")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lpsolve" ,r-lpsolve)
+ ("r-mass" ,r-mass)
+ ("r-quadprog" ,r-quadprog)))
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "http://cran.r-project.org/web/packages/limSolve")
+ (synopsis "Solving linear inverse models")
+ (description
+ "This package provides functions that:
+
+@enumerate
+@item find the minimum/maximum of a linear or quadratic function,
+@item sample an underdetermined or overdetermined system,
+@item solve a linear system Ax=B for the unknown x.
+@end enumerate
+
+It includes banded and tridiagonal linear systems. The package calls Fortran
+functions from LINPACK.")
+ ;; Any GPL version.
+ (license (list license:gpl2+ license:gpl3+))))
+
+(define-public r-fitdistrplus
+ (package
+ (name "r-fitdistrplus")
+ (version "1.0-9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "fitdistrplus" version))
+ (sha256
+ (base32
+ "18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-survival" ,r-survival)))
+ (home-page "http://riskassessment.r-forge.r-project.org")
+ (synopsis "Fitting a parametric distribution from data")
+ (description
+ "This package extends the @code{fitdistr} function of the MASS package
+with several functions to help the fit of a parametric distribution to
+non-censored or censored data. Censored data may contain left-censored,
+right-censored and interval-censored values, with several lower and upper
+bounds. In addition to @dfn{maximum likelihood estimation} (MLE), the package
+provides moment matching (MME), quantile matching (QME) and maximum
+goodness-of-fit estimation (MGE) methods (available only for non-censored
+data). Weighted versions of MLE, MME and QME are available.")
+ (license license:gpl2+)))
+
+(define-public r-energy
+ (package
+ (name "r-energy")
+ (version "1.7-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "energy" version))
+ (sha256
+ (base32
+ "1g4hqi6mgsnd1w4q7dd2m40ljh2jdmvad91ksbq9fscnrqpvji1x"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-boot" ,r-boot)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "http://cran.r-project.org/web/packages/energy")
+ (synopsis "Multivariate inference via the energy of data")
+ (description
+ "This package provides e-statistics (energy) tests and statistics for
+multivariate and univariate inference, including distance correlation,
+one-sample, two-sample, and multi-sample tests for comparing multivariate
+distributions, are implemented. Measuring and testing multivariate
+independence based on distance correlation, partial distance correlation,
+multivariate goodness-of-fit tests, clustering based on energy distance,
+testing for multivariate normality, distance components (disco) for
+non-parametric analysis of structured data, and other energy
+statistics/methods are implemented.")
+ (license license:gpl2+)))
+
+(define-public r-suppdists
+ (package
+ (name "r-suppdists")
+ (version "1.1-9.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "SuppDists" version))
+ (sha256
+ (base32
+ "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"))))
+ (properties `((upstream-name . "SuppDists")))
+ (build-system r-build-system)
+ (home-page "http://cran.r-project.org/web/packages/SuppDists")
+ (synopsis "Supplementary distributions")
+ (description
+ "This package provides ten distributions supplementing those built into
+R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared,
+Spearman's rho, maximum F ratio, the Pearson product moment correlation
+coefficient, Johnson distributions, normal scores and generalized
+hypergeometric distributions. In addition two random number generators of
+George Marsaglia are included.")
+ (license license:gpl2+)))
+
+(define-public r-ksamples
+ (package
+ (name "r-ksamples")
+ (version "1.2-6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "kSamples" version))
+ (sha256
+ (base32
+ "1pbam0zqq44slpxdgl2s2fsfdgl7i0pgm8bzlvnm0fy0na24bgdj"))))
+ (properties `((upstream-name . "kSamples")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-suppdists" ,r-suppdists)))
+ (home-page "http://cran.r-project.org/web/packages/kSamples")
+ (synopsis "K-Sample rank tests and their combinations")
+ (description
+ "This package provides tools to compares k samples using the
+Anderson-Darling test, Kruskal-Wallis type tests with different rank score
+criteria, Steel's multiple comparison test, and the Jonckheere-Terpstra (JT)
+test. It computes asymptotic, simulated or (limited) exact P-values, all
+valid under randomization, with or without ties, or conditionally under random
+sampling from populations, given the observed tie pattern. Except for Steel's
+test and the JT test it also combines these tests across several blocks of
+samples.")
+ (license license:gpl2+)))
diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index 62fe5fe081..0a05a10698 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -81,7 +81,7 @@ communication, encryption, decryption, signatures, etc.")
(define-public signify
(package
(name "signify")
- (version "21")
+ (version "22")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/aperezdc/signify/"
@@ -89,7 +89,7 @@ communication, encryption, decryption, signatures, etc.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0jd26kxwmmar3bylpx9x5dpqxzs17ky5dvwx8pdgcg95n4lyk223"))))
+ "0iv5bjaas70ymqchxasapin4c32c41kqzkfhc3kcjzd7rxy78msy"))))
(build-system gnu-build-system)
;; TODO Build with libwaive (described in README.md), to implement something
;; like OpenBSD's pledge().
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index a025317ff5..6b8695ff04 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -17,6 +17,7 @@
;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -396,7 +397,7 @@ Language.")
(define-public mariadb
(package
(name "mariadb")
- (version "10.1.25")
+ (version "10.1.26")
(source (origin
(method url-fetch)
(uri (string-append "https://downloads.mariadb.org/f/"
@@ -404,7 +405,7 @@ Language.")
name "-" version ".tar.gz"))
(sha256
(base32
- "1mm0n8sl6grajk5rbrx55333laz5dg2abyl8mlsn7h8vdymfq1bj"))))
+ "0ggpdcal0if9y6h9hp1yv2q65cbkjfl4p8rqk68a5pk7k75v325s"))))
(build-system cmake-build-system)
(arguments
'(#:configure-flags
diff --git a/gnu/packages/debug.scm b/gnu/packages/debug.scm
index bde06f35b9..0fc1f513ba 100644
--- a/gnu/packages/debug.scm
+++ b/gnu/packages/debug.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -166,12 +167,15 @@ tools that process C/C++ code.")
(%current-system))
("x86_64-linux" "x86_64")
("i686-linux" "i386")
+ ("aarch64-linux" "aarch64")
+ ("armhf-linux" "arm")
+ ("mips64el-linux" "mips64el")
;; Prevent errors when querying this package on unsupported
;; platforms, e.g. when running "guix package --search="
(_ "UNSUPPORTED"))))
(package
(name "american-fuzzy-lop")
- (version "2.15b") ;It seems all releases have the 'b' suffix
+ (version "2.49b") ;It seems all releases have the 'b' suffix
(source
(origin
(method url-fetch)
@@ -179,7 +183,7 @@ tools that process C/C++ code.")
"afl-" version ".tgz"))
(sha256
(base32
- "04n2jfkchpz6a07w694b0im1vcmc3220ryqcaasa7vix7784wzs2"))))
+ "1lc8mpwlbyb1iil9961yfysp8l2l4nw0s07781m1haiz4jq2rigp"))))
(build-system gnu-build-system)
(inputs
`(("custom-qemu"
@@ -234,6 +238,20 @@ tools that process C/C++ code.")
"CC=gcc")
#:phases (modify-phases %standard-phases
(delete 'configure)
+ ,@(if (string=? (%current-system) (or "x86_64-linux"
+ "i686-linux"))
+ '()
+ '((add-before 'build 'set-afl-flag
+ (lambda _ (setenv "AFL_NO_X86" "1") #t))
+ (add-after 'install 'remove-x86-programs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin/")))
+ (delete-file (string-append bin "afl-gcc"))
+ (delete-file (string-append bin "afl-g++"))
+ (delete-file (string-append bin "afl-clang"))
+ (delete-file (string-append bin "afl-clang++")))
+ #t))))
(add-after
;; TODO: Build and install the afl-llvm tool.
'install 'install-qemu
@@ -243,10 +261,7 @@ tools that process C/C++ code.")
(symlink (string-append qemu "/bin/qemu-" ,machine)
(string-append out "/bin/afl-qemu-trace"))
#t)))
- (delete 'check))))
- (supported-systems (fold delete
- %supported-systems
- '("armhf-linux" "mips64el-linux")))
+ (delete 'check)))) ; Tests are run during 'install phase.
(home-page "http://lcamtuf.coredump.cx/afl")
(synopsis "Security-oriented fuzzer")
(description
diff --git a/gnu/packages/ebook.scm b/gnu/packages/ebook.scm
index 32f4f3b2d1..38abf47c87 100644
--- a/gnu/packages/ebook.scm
+++ b/gnu/packages/ebook.scm
@@ -28,10 +28,14 @@
#:use-module (gnu packages)
#:use-module (guix build-system python)
#:use-module (gnu packages)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
#:use-module (gnu packages databases)
#:use-module (gnu packages fonts)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages freedesktop)
+ #:use-module (gnu packages fribidi)
+ #:use-module (gnu packages gtk)
#:use-module (gnu packages gnome)
#:use-module (gnu packages glib)
#:use-module (gnu packages icu4c)
@@ -44,6 +48,7 @@
#:use-module (gnu packages serialization)
#:use-module (gnu packages tls)
#:use-module (gnu packages web)
+ #:use-module (gnu packages xml)
#:use-module (gnu packages xorg))
(define-public chmlib
@@ -195,3 +200,80 @@ ebooks for convenient reading.")
license:public-domain
license:silofl1.1
license:cc-by-sa3.0))))
+
+(define-public liblinebreak
+ (package
+ (name "liblinebreak")
+ (version "2.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/vimgadgets"
+ "/liblinebreak/" version
+ "/liblinebreak-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1f36dbq7nc77lln1by2n1yl050g9dc63viawhs3gc3169mavm36x"))))
+ (build-system gnu-build-system)
+ (home-page "http://vimgadgets.sourceforge.net/liblinebreak/")
+ (synopsis "Library for detecting where linebreaks are allowed in text")
+ (description "@code{liblinebreak} is an implementation of the line
+breaking algorithm as described in Unicode 6.0.0 Standard Annex 14,
+Revision 26. It breaks lines that contain Unicode characters. It is
+designed to be used in a generic text renderer.")
+ (license license:zlib)))
+
+(define-public fbreader
+ (package
+ (name "fbreader")
+ (version "0.99.6")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/geometer/FBReader/"
+ "archive/" version "-freebsdport.tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0gf1nl562fqkwlzcn6rgkp1j8jcixzmfsnwxbc0sm49zh8n3zqib"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("curl" ,curl)
+ ("expat" ,expat)
+ ("fribidi" ,fribidi)
+ ("glib" ,glib)
+ ("gtk+-2" ,gtk+-2)
+ ("libjpeg" ,libjpeg)
+ ("liblinebreak" ,liblinebreak)
+ ("libxft" ,libxft)
+ ("sqlite" ,sqlite)
+ ("zlib" ,zlib)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (arguments
+ `(#:tests? #f ; No tests exist.
+ #:make-flags `("CC=gcc" "TARGET_ARCH=desktop" "UI_TYPE=gtk"
+ "TARGET_STATUS=release"
+ ,(string-append "INSTALLDIR="
+ (assoc-ref %outputs "out"))
+ ,(string-append "LDFLAGS=-Wl,-rpath="
+ (assoc-ref %outputs "out") "/lib"))
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure))))
+ (home-page "https://fbreader.org/")
+ (synopsis "E-Book reader")
+ (description "@code{fbreader} is an E-Book reader. It supports the
+following formats:
+
+@enumerate
+@item CHM
+@item Docbook
+@item FB2
+@item HTML
+@item OEB
+@item PDB
+@item RTF
+@item TCR
+@item TXT
+@item XHTML
+@end enumerate")
+ (license license:gpl2+)))
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index 5a69990c67..1728b5b92d 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -2632,6 +2632,38 @@ features found in other packages it also brings many improvements as
well as completely new features.")
(license license:gpl3+)))
+(define-public emacs-highlight-symbol
+ (package
+ (name "emacs-highlight-symbol")
+ (version "1.3")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/nschum/highlight-symbol.el/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1n7k1qns0fn0jsyc0hrjac5nzk21xw48yc30vyrhwvc51h0b9g90"))))
+ (build-system emacs-build-system)
+ (home-page "https://nschum.de/src/emacs/highlight-symbol")
+ (synopsis "Automatic and manual symbol highlighting for Emacs")
+ (description
+ "Use @code{highlight-symbol} to toggle highlighting of the symbol at
+point throughout the current buffer. Use @code{highlight-symbol-mode} to keep
+the symbol at point highlighted.
+
+The functions @code{highlight-symbol-next}, @code{highlight-symbol-prev},
+@code{highlight-symbol-next-in-defun} and
+@code{highlight-symbol-prev-in-defun} allow for cycling through the locations
+of any symbol at point. Use @code{highlight-symbol-nav-mode} to enable key
+bindings @code{M-p} and @code{M-p} for navigation. When
+@code{highlight-symbol-on-navigation-p} is set, highlighting is triggered
+regardless of @code{highlight-symbol-idle-delay}.
+
+@code{highlight-symbol-query-replace} can be used to replace the symbol. ")
+ (license license:gpl2+)))
+
(define-public emacs-hl-todo
(package
(name "emacs-hl-todo")
diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm
index b01d39c7e2..a83be8522c 100644
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@ -622,35 +622,14 @@ utilities to ease adding new glyphs to the font.")
(name "font-google-noto")
(version "20170403")
(source (origin
- (method url-fetch)
+ (method url-fetch/zipbomb)
(uri (string-append "https://noto-website.storage.googleapis.com/"
"pkgs/Noto-hinted.zip"))
+ (file-name (string-append name "-" version ".zip"))
(sha256
(base32
"1p92a6dvs7wqwjfpp1ahr9z1wz35am0l8r78521383spd77bmrfm"))))
- (build-system trivial-build-system)
- (arguments
- `(#:modules ((guix build utils))
- #:builder (begin
- (use-modules (guix build utils)
- (srfi srfi-26))
-
- (let ((PATH (string-append (assoc-ref %build-inputs
- "unzip")
- "/bin"))
- (font-dir (string-append %output
- "/share/fonts/truetype")))
- (setenv "PATH" PATH)
- (system* "unzip" (assoc-ref %build-inputs "source"))
-
- (mkdir-p font-dir)
- (for-each (lambda (ttf)
- (install-file ttf font-dir))
- (find-files "." "\\.ttf$"))
- (for-each (lambda (otf)
- (install-file otf font-dir))
- (find-files "." "\\.otf$"))))))
- (native-inputs `(("unzip" ,unzip)))
+ (build-system font-build-system)
(home-page "https://www.google.com/get/noto/")
(synopsis "Fonts to cover all languages")
(description "Google Noto Fonts is a family of fonts designed to support
diff --git a/gnu/packages/freeipmi.scm b/gnu/packages/freeipmi.scm
index 1ad7d6393a..6708092693 100644
--- a/gnu/packages/freeipmi.scm
+++ b/gnu/packages/freeipmi.scm
@@ -27,14 +27,14 @@
(define-public freeipmi
(package
(name "freeipmi")
- (version "1.5.6")
+ (version "1.5.7")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/freeipmi/freeipmi-"
version ".tar.gz"))
(sha256
(base32
- "0p3cl32wwxhyc5vkd9spmmckb78797snkmplgh0ybc7zap2bs6ib"))))
+ "1rdxs33klk6956rg8mn2dxwkk43y5yilvgvbcka8g6v4x0r98v5l"))))
(build-system gnu-build-system)
(inputs
`(("libgcrypt" ,libgcrypt)))
diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm
index c98c15e462..95f8697b42 100644
--- a/gnu/packages/game-development.scm
+++ b/gnu/packages/game-development.scm
@@ -9,6 +9,7 @@
;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 Julian Graham <joolean@gmail.com>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -40,11 +41,14 @@
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
#:use-module (gnu packages documentation)
+ #:use-module (gnu packages fonts)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages fribidi)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnunet)
+ #:use-module (gnu packages graphics)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages guile)
#:use-module (gnu packages m4)
#:use-module (gnu packages multiprecision)
@@ -934,3 +938,84 @@ Joysticks, etc) and feedback devices (e.g. force feedback). Meant to be very
robust and compatible with many systems and operating systems.")
(home-page "https://github.com/wgois/OIS")
(license license:zlib)))
+
+(define-public mygui
+ (package
+ (name "mygui")
+ (version "3.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/MyGUI/" name
+ "/archive/MyGUI" version ".tar.gz"))
+ (sha256
+ (base32
+ "13x7cydmj7gjmsg702sqjbfi53z265iv6j7binv3r6a7ibndfa0a"))))
+ (build-system cmake-build-system)
+ (arguments
+ '(#:tests? #f ; No test target
+ #:configure-flags
+ (list "-DMYGUI_INSTALL_DOCS=TRUE"
+ (string-append "-DOGRE_INCLUDE_DIR="
+ (assoc-ref %build-inputs "ogre")
+ "/include/OGRE"))))
+ (native-inputs
+ `(("boost" ,boost)
+ ("doxygen" ,doxygen)
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("font-dejavu" ,font-dejavu)
+ ("freetype" ,freetype)
+ ("graphviz" ,graphviz)
+ ("libx11" ,libx11)
+ ("ogre" ,ogre)
+ ("ois" ,ois)))
+ (synopsis "Fast, flexible and simple GUI")
+ (description
+ "MyGUI is a library for creating Graphical User Interfaces (GUIs) for games
+and 3D applications. The main goals of mygui are: speed, flexibility and ease
+of use.")
+ (home-page "http://mygui.info/")
+ (license license:expat)))
+
+(define-public openmw
+ (package
+ (name "openmw")
+ (version "0.42.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/OpenMW/openmw/archive/"
+ name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1pla8016lpbg8cgm9kia318a860f26dmiayc72p3zl35mqrc7g7w"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:tests? #f ; No test target
+ #:configure-flags
+ (list "-DDESIRED_QT_VERSION=5")))
+ (native-inputs
+ `(("boost" ,boost)
+ ("doxygen" ,doxygen)
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("bullet" ,bullet)
+ ("ffmpeg" ,ffmpeg)
+ ("libxt" ,libxt)
+ ("mygui" ,mygui)
+ ("openal" ,openal)
+ ("openscenegraph" ,openscenegraph)
+ ("qtbase" ,qtbase)
+ ("sdl" ,sdl2)
+ ("unshield" ,unshield)))
+ (synopsis "Free software re-implementation of the RPG Morrowind engine")
+ (description
+ "OpenMW is a free, open source and modern engine which reimplements and
+extends the one that runs the 2002 open-world RPG Morrowind. The engine comes
+with its own editor, called OpenMW-CS which allows the user to edit or create
+their own original games.")
+ (home-page "https://openmw.org")
+ (license license:gpl3)))
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 436a885d6e..7932e841c4 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -83,6 +83,7 @@
#:use-module (gnu packages guile)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages libcanberra)
+ #:use-module (gnu packages libedit)
#:use-module (gnu packages libunwind)
#:use-module (gnu packages haskell)
#:use-module (gnu packages mp3)
@@ -433,6 +434,47 @@ scriptable with Guile.")
Chess). It is similar to standard chess but this variant is far more complicated.")
(license license:gpl3+)))
+(define-public ltris
+ (package
+ (name "ltris")
+ (version "1.0.19")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://prdownloads.sourceforge.net/lgames/"
+ name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1895wv1fqklrj4apkz47rnkcfhfav7zjknskw6p0886j35vrwslg"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(;; The code in LTris uses traditional GNU semantics for inline functions
+ #:configure-flags '("CFLAGS=-fgnu89-inline")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'set-paths 'set-sdl-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "CPATH"
+ (string-append (assoc-ref inputs "sdl-union")
+ "/include/SDL"))
+ #t)))))
+ (inputs
+ `(("sdl-union" ,(sdl-union (list sdl sdl-mixer)))))
+ (home-page "http://lgames.sourceforge.net/LTris/")
+ (synopsis "Tetris clone based on the SDL library")
+ (description
+ "LTris is a tetris clone: differently shaped blocks are falling down the
+rectangular playing field and can be moved sideways or rotated by 90 degree
+units with the aim of building lines without gaps which then disappear (causing
+any block above the deleted line to fall down). LTris has three game modes: In
+Classic you play until the stack of blocks reaches the top of the playing field
+and no new blocks can enter. In Figures the playing field is reset to a new
+figure each level and later on tiles and lines suddenly appear. In Multiplayer
+up to three players (either human or CPU) compete with each other sending
+removed lines to all opponents. There is also a Demo mode in which you can
+watch your CPU playing while enjoying a cup of tea!")
+ (license license:gpl2+)))
+
(define-public prboom-plus
(package
(name "prboom-plus")
@@ -2920,6 +2962,64 @@ Super Game Boy, BS-X Satellaview, and Sufami Turbo.")
;; - higan/emulator/emulator.hpp
(license license:gpl3)))
+(define-public mgba
+ (package
+ (name "mgba")
+ (version "0.6.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/mgba-emu/mgba/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "01zy2w5pihlkrmbm51icgyff6iqyqa5ha6qrm4aj8ibzznz03kyq"))
+ (modules '((guix build utils)))
+ (snippet
+ ;; Make sure we don't use the bundled software.
+ '(for-each
+ (lambda (subdir)
+ (let ((lib-subdir (string-append "src/third-party/" subdir)))
+ (delete-file-recursively lib-subdir)))
+ '("libpng" "lzma" "sqlite3" "zlib")))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:tests? #f ;no "test" target
+ #:configure-flags
+ (list "-DUSE_LZMA=OFF" ;do not use bundled LZMA
+ "-DUSE_LIBZIP=OFF" ;use "zlib" instead
+ ;; Validate RUNPATH phase fails ("error: depends on
+ ;; 'libmgba.so.0.6', which cannot be found in RUNPATH") without
+ ;; the following S-exp.
+ (string-append "-DCMAKE_INSTALL_LIBDIR="
+ (assoc-ref %outputs "out")
+ "/lib"))))
+ (native-inputs `(("pkg-config" ,pkg-config)))
+ (inputs `(("ffmpeg" ,ffmpeg)
+ ("imagemagick" ,imagemagick)
+ ("libedit" ,libedit)
+ ("libepoxy" ,libepoxy)
+ ("libpng" ,libpng)
+ ("mesa" ,mesa)
+ ("minizip" ,minizip)
+ ("ncurses" ,ncurses)
+ ("qtbase" ,qtbase)
+ ("qtmultimedia" ,qtmultimedia)
+ ("qttools" ,qttools)
+ ("sdl2" ,sdl2)
+ ("sqlite" ,sqlite)
+ ("zlib" ,zlib)))
+ (home-page "https://mgba.io")
+ (synopsis "Game Boy Advance emulator")
+ (description
+ "mGBA is an emulator for running Game Boy Advance games. It aims to be
+faster and more accurate than many existing Game Boy Advance emulators, as
+well as adding features that other emulators lack. It also supports Game Boy
+and Game Boy Color games.")
+ ;; Code is mainly MPL 2.0. "blip_buf.c" is LGPL 2.1+ and "inih.c" is
+ ;; BSD-3.
+ (license (list license:mpl2.0 license:lgpl2.1+ license:bsd-3))))
+
(define-public grue-hunter
(package
(name "grue-hunter")
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 87070e77fd..8f7d0a3dad 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2015, 2016 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Mathieu Lirzin <mthl@openmailbox.org>
-;;; Copyright © 2015 Andy Wingo <wingo@igalia.com>
+;;; Copyright © 2015, 2017 Andy Wingo <wingo@igalia.com>
;;; Copyright © 2015 David Hashe <david.hashe@dhashe.com>
;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Mark H Weaver <mhw@netris.org>
@@ -627,7 +627,7 @@ GNOME Desktop.")
(define-public gnome-keyring
(package
(name "gnome-keyring")
- (version "3.20.0")
+ (version "3.20.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -635,7 +635,7 @@ GNOME Desktop.")
name "-" version ".tar.xz"))
(sha256
(base32
- "16gcwwcg91ipxjmiyi4c4njvnxixmv1i278p0bilc3lafk6ww5xw"))))
+ "134ci3mn6jjap59z3lrvyiip7zf2nlw5xvanr44yajs57xr4x5lp"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;48 of 603 tests fail because /var/lib/dbus/machine-id does
@@ -2134,6 +2134,9 @@ selection and URL hints.")))
(uri (string-append "mirror://gnome/sources/" name "/"
(version-major+minor version) "/"
name "-" version ".tar.xz"))
+ (patches ; We have to revert 2 commits to build against freerdp 1.1.
+ (search-patches "vinagre-revert-1.patch"
+ "vinagre-revert-2.patch"))
(sha256
(base32
"10jya3jyrm18nbw3v410gbkc7677bqamax44pzgd3j15randn76d"))))
@@ -3039,7 +3042,7 @@ settings, themes, mouse settings, and startup of other daemons.")
(define-public totem-pl-parser
(package
(name "totem-pl-parser")
- (version "3.10.7")
+ (version "3.10.8")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/totem-pl-parser/"
@@ -3047,7 +3050,7 @@ settings, themes, mouse settings, and startup of other daemons.")
"totem-pl-parser-" version ".tar.xz"))
(sha256
(base32
- "17089sqyh6w6zr8ci865ihmvqshnslcsk9fbsl4s7yii66y8b0lw"))))
+ "0ayxg0gfs5h5jhr811ja5hxlhryklzp6jlal2ach9wym2c3hmigz"))))
(build-system gnu-build-system)
(arguments
;; FIXME: Tests require gvfs.
@@ -3391,10 +3394,10 @@ write applications that need to store structured data as well as make complex
queries upon that data.")
(license license:lgpl2.1+)))
-(define-public libgames-support
+(define-public libgnome-games-support
(package
- (name "libgames-support")
- (version "1.0.2")
+ (name "libgnome-games-support")
+ (version "1.2.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -3402,14 +3405,14 @@ queries upon that data.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0rms2ksiv7j9944km7r87q22nh05si1fisn5xm3z4zy5vpcfi5mh"))))
+ "04qbgcgmc01sinhbqdljiny8q868l01nkdawj8wrnqnd1i8czvsg"))))
(build-system gnu-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
(add-before 'check 'pre-check
(lambda _
- ;; tests require a writable HOME.
+ ;; Tests require a writable HOME.
(setenv "HOME" (getcwd))
#t)))))
(native-inputs
@@ -3417,30 +3420,16 @@ queries upon that data.")
("pkg-config" ,pkg-config)
("vala" ,vala)))
(propagated-inputs
- ;; Required by libgames-support-1.0.pc
+ ;; Required by libgnome-games-support-1.0.pc
`(("gtk+" ,gtk+)
("libgee" ,libgee)))
(home-page "https://www.gnome.org/")
(synopsis "Useful functionality shared among GNOME games")
(description
- "libgames-support is a small library intended for internal use by
+ "libgnome-games-support is a small library intended for internal use by
GNOME Games, but it may be used by others.")
(license license:lgpl3+)))
-(define-public libgnome-games-support
- (package
- (inherit libgames-support)
- (name "libgnome-games-support")
- (version "1.2.1")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://gnome/sources/" name "/"
- (version-major+minor version) "/"
- name "-" version ".tar.xz"))
- (sha256
- (base32
- "1rsyf5hbjim7zpk1yar3gv65g1nmw6zbbc0smrmxsfk0f9n3j9m6"))))))
-
(define-public gnome-klotski
(package
(name "gnome-klotski")
@@ -4357,7 +4346,7 @@ metadata in photo and video files of various formats.")
(define-public shotwell
(package
(name "shotwell")
- (version "0.26.2")
+ (version "0.26.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -4365,7 +4354,7 @@ metadata in photo and video files of various formats.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0frjqa6nmh025clwnb74z2rzbdq65wjcp2lf9csgcbkpahyjhrag"))))
+ "1r8fd63r7c5n99hwrkzv9jlrk84z4sa15q3h70pydzfjnfqf90zv"))))
(build-system glib-or-gtk-build-system)
(propagated-inputs
`(("dconf" ,dconf)))
@@ -4525,7 +4514,7 @@ configuration program to choose applications starting on login.")
(define-public gjs
(package
(name "gjs")
- (version "1.48.3")
+ (version "1.48.6")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -4533,7 +4522,7 @@ configuration program to choose applications starting on login.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0cqgv460wfhwkw6j1h46v6bg29bycg6dfl7c5rv0lfcqmmw7v6v6"))))
+ "04nkig077r7xq55dxg9v46w8i7p8zkkdyja92yv81grq9fx6apz8"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -5274,7 +5263,7 @@ devices using the GNOME desktop.")
(define-public gnome-control-center
(package
(name "gnome-control-center")
- (version "3.24.2")
+ (version "3.24.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -5282,7 +5271,7 @@ devices using the GNOME desktop.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0awga40jh6gvn335mn6kyl6yg79frap1znrsz3sw2m27yldlnaiq"))))
+ "18ncjqjj93a39sla2zjr9i6pw59yh87p4jla899lmvi2qajd5923"))))
(build-system glib-or-gtk-build-system)
(arguments
'(#:phases
@@ -5345,7 +5334,7 @@ properties, screen resolution, and other GNOME parameters.")
(define-public gnome-shell
(package
(name "gnome-shell")
- (version "3.24.2")
+ (version "3.24.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -5353,7 +5342,7 @@ properties, screen resolution, and other GNOME parameters.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1xp2ccmdrvzlczsrcplykwqwx2v4lbmkr0rxyylb06danlw9mivh"))))
+ "1f20x36ymkp1j667hb7s7byly2gqc4m0anldy3qwp38vm8437caq"))))
(build-system glib-or-gtk-build-system)
(arguments
'(#:phases
@@ -5733,6 +5722,37 @@ configuration system for GNOME. It allows users to configure desktop
software that do not provide their own configuration interface.")
(license license:lgpl2.1+)))
+(define-public gnome-default-applications
+ (package
+ (name "gnome-default-applications")
+ (version "0")
+ (build-system trivial-build-system)
+ (source #f)
+ (propagated-inputs
+ `(("nautilus" ,nautilus)))
+ (arguments
+ `(#:modules ((guix build utils))
+ #:builder
+ (begin
+ (use-modules (guix build utils))
+ (let* ((out (assoc-ref %outputs "out"))
+ (apps (string-append out "/share/applications")))
+ (mkdir-p apps)
+ (call-with-output-file (string-append apps "/defaults.list")
+ (lambda (port)
+ (format port "[Default Applications]\n")
+ (format port "inode/directory=org.gnome.Nautilus.desktop\n")))
+ #t))))
+ (synopsis "Default MIME type associations for the GNOME desktop")
+ (description
+ "Given many installed packages which might handle a given MIME type, a
+user running the GNOME desktop probably has some preferences: for example,
+that folders be opened by default by the Nautilus file manager, not the Baobab
+disk usage analyzer. This package establishes that set of default MIME type
+associations for GNOME.")
+ (license license:gpl3+)
+ (home-page #f)))
+
(define-public gnome
(package
(name "gnome")
@@ -5746,6 +5766,7 @@ software that do not provide their own configuration interface.")
`(("adwaita-icon-theme" ,adwaita-icon-theme)
("baobab" ,baobab)
("font-cantarell" ,font-cantarell)
+ ("font-dejavu" ,font-dejavu)
("at-spi2-core" ,at-spi2-core)
("dbus" ,dbus)
("dconf" ,dconf)
@@ -5757,13 +5778,20 @@ software that do not provide their own configuration interface.")
("gedit" ,gedit)
("glib-networking" ,glib-networking)
("gnome-backgrounds" ,gnome-backgrounds)
+ ("gnome-bluetooth" ,gnome-bluetooth)
+ ("gnome-calculator" ,gnome-calculator)
("gnome-control-center" ,gnome-control-center)
+ ("gnome-disk-utility" ,gnome-disk-utility)
+ ("gnome-default-applications" ,gnome-default-applications)
("gnome-keyring" ,gnome-keyring)
+ ("gnome-online-accounts" ,gnome-online-accounts)
("gnome-session" ,gnome-session)
("gnome-settings-daemon" ,gnome-settings-daemon)
("gnome-shell" ,gnome-shell)
+ ("gnome-system-monitor" ,gnome-system-monitor)
("gnome-terminal" ,gnome-terminal)
("gnome-themes-standard" ,gnome-themes-standard)
+ ("gucharmap" ,gucharmap)
("gvfs" ,gvfs)
("hicolor-icon-theme" ,hicolor-icon-theme)
("nautilus" ,nautilus)
diff --git a/gnu/packages/gnunet.scm b/gnu/packages/gnunet.scm
index 497afaf668..7ff1a3f6f8 100644
--- a/gnu/packages/gnunet.scm
+++ b/gnu/packages/gnunet.scm
@@ -186,14 +186,14 @@ and support for SSL3 and TLS.")
(define-public gnurl
(package
(name "gnurl")
- (version "7.55.0")
+ (version "7.55.1")
(source (origin
(method url-fetch)
(uri (string-append "https://gnunet.org/sites/default/files/"
name "-" version ".tar.bz2"))
(sha256
(base32
- "0i9bik76rbyag3mbxbk8j383iaxs5v7lmjkn4v36ascl6bdks6vn"))))
+ "118vb2mc5ivsbrkqzg40w56raf5jdnx00cfmkh735w0mjfy6wccv"))))
(build-system gnu-build-system)
(outputs '("out"
"doc")) ; 1.5 MiB of man3 pages
diff --git a/gnu/packages/gobby.scm b/gnu/packages/gobby.scm
index 961028d00a..45ebed7c43 100644
--- a/gnu/packages/gobby.scm
+++ b/gnu/packages/gobby.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Andy Wingo <wingo@igalia.com>
+;;; Copyright © 2016, 2017 Andy Wingo <wingo@igalia.com>
+;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -25,6 +26,7 @@
#:use-module (gnu packages)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
+ #:use-module (gnu packages gsasl)
#:use-module (gnu packages gtk)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages tls)
@@ -96,7 +98,10 @@
documents in one session. Obby is used by the Gobby collaborative editor.")
(license license:gpl2+)))
-(define-public gobby
+;; Although there is a newer version of Gobby defined below, the protocols are
+;; incompatible; you need Gobby 0.4 if you want to connect to servers running
+;; the 0.4 protocol.
+(define-public gobby-0.4
(package
(name "gobby")
(version "0.4.13")
@@ -127,5 +132,81 @@ documents in one session. Obby is used by the Gobby collaborative editor.")
(description
"Collaborative editor that supports multiple documents in one session and
a multi-user chat. Gobby allows multiple users to edit the same document
+together over the internet in real-time.
+
+This is the older 0.4 version of Gobby. Use this version only if you need to
+connect to a server running the old 0.4 protocol.")
+ (license license:gpl2+)))
+
+(define-public gobby
+ (package
+ (name "gobby")
+ (version "0.5.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://releases.0x539.de/gobby/gobby-"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "165x0r668ma5blziisvbr8qig3jw9hf7i6w8r7wwvz3wsac3bswc"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("intltool" ,intltool)))
+ (inputs
+ `(("gnutls" ,gnutls)
+ ("gsasl" ,gsasl)
+ ("gtkmm-2" ,gtkmm-2)
+ ("gtksourceview-2" ,gtksourceview-2)
+ ("libinfinity" ,libinfinity)
+ ("libxml++-2" ,libxml++-2)))
+ (arguments
+ ;; Required by libsigc++.
+ `(#:configure-flags '("CXXFLAGS=-std=c++11")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'move-executable
+ (lambda* (#:key outputs #:allow-other-keys)
+ (with-directory-excursion (assoc-ref outputs "out")
+ (rename-file "bin/gobby-0.5" "bin/gobby"))
+ #t)))))
+ (home-page "https://gobby.github.io/")
+ (synopsis "Collaborative editor")
+ (description
+ "Collaborative editor that supports multiple documents in one session and
+a multi-user chat. Gobby allows multiple users to edit the same document
together over the internet in real-time.")
(license license:gpl2+)))
+
+(define-public libinfinity
+ (package
+ (name "libinfinity")
+ (version "0.6.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://releases.0x539.de/libinfinity/libinfinity-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0nylsb6qz9pjw3agjp27c4za205i6zg6i5g1vgs5vbdnbh77wkhc"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("glib" ,glib)
+ ("gsasl" ,gsasl)
+ ("gtk+" ,gtk+-2)
+ ("libxml2" ,libxml2)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (arguments
+ `(#:configure-flags (list "--with-inftextgtk"
+ "--with-infgtk")))
+ (home-page "https://gobby.github.io/")
+ (synopsis "Infininote protocol implementation")
+ (description "libinfinity is a library to build collaborative text
+editors. Changes to the text buffers are synced to all other clients over a
+central server. Even though a central server is involved, the local user sees
+his changes applied instantly and the merging is done on the individual
+clients.")
+ (license license:lgpl2.1+)))
diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index d0e50106fa..f84cc27836 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -36,11 +36,13 @@
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
+ #:use-module (gnu packages check)
#:use-module (gnu packages documentation)
#:use-module (gnu packages haskell)
#:use-module (gnu packages image)
#:use-module (gnu packages python)
#:use-module (gnu packages flex)
+ #:use-module (gnu packages fonts)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pulseaudio) ;libsndfile, libsamplerate
@@ -60,6 +62,7 @@
#:use-module (gnu packages qt)
#:use-module (gnu packages readline)
#:use-module (gnu packages sdl)
+ #:use-module (gnu packages swig)
#:use-module (gnu packages video)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg))
@@ -228,6 +231,74 @@ quaternions and other useful 2D and 3D math functions. Iex is an
exception-handling library.")
(license license:bsd-3)))
+(define-public ogre
+ (package
+ (name "ogre")
+ (version "1.10.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/OGRECave/" name
+ "/archive/v" version ".tar.gz"))
+ (sha256
+ (base32
+ "1ab354bmwwryxr4zgxchfkm6h4z38mjgif8yn89x640rsrgw5ipj"))
+ (file-name (string-append name "-" version ".tar.gz"))))
+ (build-system cmake-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-before 'configure 'pre-configure
+ (lambda _
+ ;; It expects googletest source to be downloaded and
+ ;; be in a specific place.
+ (substitute* "Tests/CMakeLists.txt"
+ (("URL(.*)$" _ suffix)
+ (string-append "URL " suffix
+ "\t\tURL_HASH "
+ "MD5=16877098823401d1bf2ed7891d7dce36\n")))
+ #t))
+ (add-before 'build 'pre-build
+ (lambda* (#:key inputs #:allow-other-keys)
+ (copy-file (assoc-ref inputs "googletest-source")
+ (string-append (getcwd)
+ "/Tests/googletest-prefix/src/"
+ "release-1.8.0.tar.gz"))
+ #t)))
+ #:configure-flags
+ (list "-DOGRE_BUILD_TESTS=TRUE"
+ (string-append "-DCMAKE_INSTALL_RPATH="
+ (assoc-ref %outputs "out") "/lib:"
+ (assoc-ref %outputs "out") "/lib/OGRE:"
+ (assoc-ref %build-inputs "googletest") "/lib")
+ "-DOGRE_INSTALL_DOCS=TRUE"
+ "-DOGRE_INSTALL_SAMPLES=TRUE"
+ "-DOGRE_INSTALL_SAMPLES_SOURCE=TRUE")))
+ (native-inputs
+ `(("boost" ,boost)
+ ("doxygen" ,doxygen)
+ ("googletest-source" ,(package-source googletest))
+ ("pkg-config" ,pkg-config)))
+ (inputs
+ `(("font-dejavu" ,font-dejavu)
+ ("freeimage" ,freeimage)
+ ("freetype" ,freetype)
+ ("glu" ,glu)
+ ("googletest" ,googletest)
+ ("sdl2" ,sdl2)
+ ("libxaw" ,libxaw)
+ ("libxrandr" ,libxrandr)
+ ("tinyxml" ,tinyxml)
+ ("zziplib" ,zziplib)))
+ (synopsis "Scene-oriented, flexible 3D engine written in C++")
+ (description
+ "OGRE (Object-Oriented Graphics Rendering Engine) is a scene-oriented,
+flexible 3D engine written in C++ designed to make it easier and more intuitive
+for developers to produce applications utilising hardware-accelerated 3D
+graphics.")
+ (home-page "http://www.ogre3d.org/")
+ (license license:expat)))
+
(define-public openexr
(package
(name "openexr")
diff --git a/gnu/packages/ham-radio.scm b/gnu/packages/ham-radio.scm
new file mode 100644
index 0000000000..0f96553c65
--- /dev/null
+++ b/gnu/packages/ham-radio.scm
@@ -0,0 +1,52 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages ham-radio)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (gnu packages libusb)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (guix build-system cmake))
+
+(define-public rtl-sdr
+ (package
+ (name "rtl-sdr")
+ (version "0.5.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://cgit.osmocom.org/rtl-sdr/snapshot/rtl-sdr-"
+ version ".tar.xz"))
+ (sha256
+ (base32
+ "08awca3v28sa4lxym4r81pzf0la0j86wbmpyhv3xd53an9gkpjy9"))))
+ (build-system cmake-build-system)
+ (inputs
+ `(("libusb" ,libusb)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (arguments
+ `(#:configure-flags '("-DDETACH_KERNEL_DRIVER=ON")
+ #:tests? #f)) ; No tests
+ (home-page "https://osmocom.org/projects/sdr/wiki/rtl-sdr")
+ (synopsis "Software defined radio driver for Realtek RTL2832U")
+ (description "DVB-T dongles based on the Realtek RTL2832U can be used as a
+cheap software defined radio, since the chip allows transferring the raw I/Q
+samples to the host. @code{rtl-sdr} provides drivers for this purpose.")
+ (license license:gpl2+)))
diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index a672092342..4f9e90e552 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -10,6 +10,7 @@
;;; Copyright © 2016, 2017 David Craven <david@craven.ch>
;;; Copyright © 2017 Danny Milosavljevic <dannym@scratchpost.org>
;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com>
+;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -1324,7 +1325,7 @@ various Haskell streaming data libraries, such as @code{conduit} and
(define-public cpphs
(package
(name "cpphs")
- (version "1.19.3")
+ (version "1.20.8")
(source
(origin
(method url-fetch)
@@ -1333,7 +1334,7 @@ various Haskell streaming data libraries, such as @code{conduit} and
name "-" version ".tar.gz"))
(sha256
(base32
- "1njpmxgpah5pcqppcl1cxb5xicf6xlqrd162qm12khp9hainlm72"))))
+ "1bh524asqhk9v1s0wvipl0hgn7l63iy3js867yv0z3h5v2kn8vg5"))))
(build-system haskell-build-system)
(inputs
`(("ghc-polyparse" ,ghc-polyparse)
@@ -1807,6 +1808,26 @@ capabilities that are optimized for performance critical use, both
in terms of large data quantities and high speed.")
(license license:bsd-3)))
+(define-public ghc-strict
+ (package
+ (name "ghc-strict")
+ (version "0.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/strict/strict-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "08cjajqz9h47fkq98mlf3rc8n5ghbmnmgn8pfsl3bdldjdkmmlrc"))))
+ (build-system haskell-build-system)
+ (home-page "https://hackage.haskell.org/package/strict")
+ (synopsis "Strict data types and String IO")
+ (description
+ "This package provides strict versions of some standard Haskell data
+types, such as pairs, @code{Maybe} and @code{Either}. It also contains strict
+IO operations.")
+ (license license:bsd-3)))
+
(define-public ghc-hashable
(package
(name "ghc-hashable")
@@ -1837,6 +1858,51 @@ data structures. The package provides instances for basic types and a way to
combine hash values.")
(license license:bsd-3)))
+(define-public ghc-data-hash
+ (package
+ (name "ghc-data-hash")
+ (version "0.2.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/data-hash"
+ "/data-hash-" version ".tar.gz"))
+ (sha256
+ (base32 "1ghbqvc48gf9p8wiy71hdpaj7by3b9cw6wgwi3qqz8iw054xs5wi"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
+ (home-page "https://hackage.haskell.org/package/data-hash")
+ (synopsis "Combinators for building fast hashing functions")
+ (description
+ "This package provides combinators for building fast hashing functions.
+It includes hashing functions for all basic Haskell98 types.")
+ (license license:bsd-3)))
+
+(define-public ghc-murmur-hash
+ (package
+ (name "ghc-murmur-hash")
+ (version "0.1.0.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/murmur-hash"
+ "/murmur-hash-" version ".tar.gz"))
+ (sha256
+ (base32 "1bb58kfnzvx3mpc0rc0dhqc1fk36nm8prd6gvf20gk6lxaadpfc9"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/nominolo/murmur-hash")
+ (synopsis "MurmurHash2 implementation for Haskell")
+ (description
+ "This package provides an implementation of MurmurHash2, a good, fast,
+general-purpose, non-cryptographic hashing function. See
+@url{https://sites.google.com/site/murmurhash/} for details. This
+implementation is pure Haskell, so it might be a bit slower than a C FFI
+binding.")
+ (license license:bsd-3)))
+
(define-public ghc-hunit
(package
(name "ghc-hunit")
@@ -3806,6 +3872,55 @@ different keys; hence the name. Also provided is a @code{locker} type,
representing a store for a single element.")
(license license:bsd-3)))
+(define-public ghc-edisonapi
+ (package
+ (name "ghc-edisonapi")
+ (version "1.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/EdisonAPI"
+ "/EdisonAPI-" version ".tar.gz"))
+ (sha256
+ (base32 "0vmmlsj8ggbpwx6fkf5fvb6jp0zpx6iba6b28m80lllr2p8bi8wm"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-mtl" ,ghc-mtl)))
+ (home-page "http://rwd.rdockins.name/edison/home/")
+ (synopsis "Library of efficient, purely-functional data structures (API)")
+ (description
+ "Edison is a library of purely functional data structures written by
+Chris Okasaki. It is named after Thomas Alva Edison and for the mnemonic
+value EDiSon (Efficient Data Structures). Edison provides several families of
+abstractions, each with multiple implementations. The main abstractions
+provided by Edison are: Sequences such as stacks, queues, and dequeues;
+Collections such as sets, bags and heaps; and Associative Collections such as
+finite maps and priority queues where the priority and element are distinct.")
+ (license license:expat)))
+
+(define-public ghc-edisoncore
+ (package
+ (name "ghc-edisoncore")
+ (version "1.3.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/EdisonCore"
+ "/EdisonCore-" version ".tar.gz"))
+ (sha256
+ (base32 "06shxmcqxcahcn6zgl64vlqix4fnq53d97drcgsh94qp7gp201ry"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-mtl" ,ghc-mtl)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-edisonapi" ,ghc-edisonapi)))
+ (home-page "http://rwd.rdockins.name/edison/home/")
+ (synopsis "Library of efficent, purely-functional data structures")
+ (description
+ "This package provides the core Edison data structure implementations,
+including multiple sequence, set, bag, and finite map concrete implementations
+with various performance characteristics.")
+ (license license:expat)))
+
(define-public ghc-mmorph
(package
(name "ghc-mmorph")
@@ -3855,6 +3970,50 @@ a subset of @code{MonadBase} into which generic control operations such as
@code{catch} can be lifted from @code{IO} or any other base monad.")
(license license:bsd-3)))
+(define-public ghc-fail
+ (package
+ (name "ghc-fail")
+ (version "4.9.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/fail/fail-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "18nlj6xvnggy61gwbyrpmvbdkq928wv0wx2zcsljb52kbhddnp3d"))))
+ (build-system haskell-build-system)
+ (home-page "https://prime.haskell.org/wiki/Libraries/Proposals/MonadFail")
+ (synopsis "Forward-compatible MonadFail class")
+ (description
+ "This package contains the @code{Control.Monad.Fail} module providing the
+@uref{https://prime.haskell.org/wiki/Libraries/Proposals/MonadFail, MonadFail}
+class that became available in
+@uref{https://hackage.haskell.org/package/base-4.9.0.0, base-4.9.0.0} for
+older @code{base} package versions. This package turns into an empty package
+when used with GHC versions which already provide the
+@code{Control.Monad.Fail} module.")
+ (license license:bsd-3)))
+
+(define-public ghc-monadplus
+ (package
+ (name "ghc-monadplus")
+ (version "1.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/monadplus"
+ "/monadplus-" version ".tar.gz"))
+ (sha256
+ (base32 "15b5320wdpmdp5slpphnc1x4rhjch3igw245dp2jxbqyvchdavin"))))
+ (build-system haskell-build-system)
+ (home-page "https://hackage.haskell.org/package/monadplus")
+ (synopsis "Filtering and folding over arbitrary MonadPlus instances")
+ (description
+ "This package generalizes many common stream operations such as
+@code{filter}, @code{catMaybes} etc, enabling filtering and folding over
+arbitrary @code{MonadPlus} instances.")
+ (license license:bsd-3)))
+
(define-public ghc-byteorder
(package
(name "ghc-byteorder")
@@ -4694,6 +4853,35 @@ definition of @code{Monad}.")
for Haskell.")
(license license:bsd-3)))
+(define-public ghc-equivalence
+ (package
+ (name "ghc-equivalence")
+ (version "0.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/equivalence"
+ "/equivalence-" version ".tar.gz"))
+ (sha256
+ (base32 "0a85bdyyvjqs5z4kfhhf758210k9gi9dv42ik66a3jl0z7aix8kx"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-mtl" ,ghc-mtl)
+ ("ghc-stmonadtrans" ,ghc-stmonadtrans)
+ ("ghc-transformers-compat" ,ghc-transformers-compat)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
+ (home-page "https://github.com/pa-ba/equivalence")
+ (synopsis "Maintaining an equivalence relation implemented as union-find")
+ (description
+ "This is an implementation of Tarjan's Union-Find algorithm (Robert E.@:
+Tarjan. \"Efficiency of a Good But Not Linear Set Union Algorithm\",JACM
+22(2), 1975) in order to maintain an equivalence relation. This
+implementation is a port of the @code{union-find} package using the @code{ST}
+monad transformer (instead of the IO monad).")
+ (license license:bsd-3)))
+
(define-public ghc-fast-logger
(package
(name "ghc-fast-logger")
@@ -5081,6 +5269,28 @@ prettified JSON to stdout. It also offers a complementary \"compact\"-mode,
essentially the opposite of pretty-printing.")
(license license:bsd-3)))
+(define-public ghc-boxes
+ (package
+ (name "ghc-boxes")
+ (version "0.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/boxes/boxes-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "1n7xiplzd3s1a39nizwjcgsh3wi2348mp21c3fk19v98ialfjgjf"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-split" ,ghc-split)
+ ("ghc-quickcheck" ,ghc-quickcheck)))
+ (home-page "https://hackage.haskell.org/package/boxes")
+ (synopsis "2D text pretty-printing library")
+ (description
+ "Boxes is a pretty-printing library for laying out text in two dimensions,
+using a simple box model.")
+ (license license:bsd-3)))
+
(define-public ghc-wai
(package
(name "ghc-wai")
@@ -5565,6 +5775,50 @@ and @code{Eq} instances. These instances used to live in the haskell-src-meta
package, and that's where the version number started.")
(license license:bsd-3)))
+(define-public ghc-geniplate-mirror
+ (package
+ (name "ghc-geniplate-mirror")
+ (version "0.7.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package"
+ "/geniplate-mirror"
+ "/geniplate-mirror-" version ".tar.gz"))
+ (sha256
+ (base32 "17vjps2118s5z3k39ij00lkmkxv3mqf8h59wv6qdamlgmhyr36si"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-mtl" ,ghc-mtl)))
+ (home-page "https://github.com/danr/geniplate")
+ (synopsis "Use Template Haskell to generate Uniplate-like functions")
+ (description
+ "Use Template Haskell to generate Uniplate-like functions. This is a
+maintained mirror of the @uref{https://hackage.haskell.org/package/geniplate,
+geniplate} package, written by Lennart Augustsson.")
+ (license license:bsd-3)))
+
+(define-public ghc-gitrev
+ (package
+ (name "ghc-gitrev")
+ (version "1.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/gitrev/gitrev-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0cl3lfm6k1h8fxp2vxa6ihfp4v8igkz9h35iwyq2frzm4kdn96d8"))))
+ (build-system haskell-build-system)
+ (inputs `(("ghc-base-compat" ,ghc-base-compat)))
+ (home-page "https://github.com/acfoltzer/gitrev")
+ (synopsis "Compile git revision info into Haskell projects")
+ (description
+ "This package provides some handy Template Haskell splices for including
+the current git hash and branch in the code of your project. This is useful
+for including in panic messages, @command{--version} output, or diagnostic
+info for more informative bug reports.")
+ (license license:bsd-3)))
+
(define-public ghc-haskell-src-meta
(package
(name "ghc-haskell-src-meta")
@@ -6078,6 +6332,31 @@ supports for high level forms of ASN1 (BER, and DER).")
when ASN1 pattern matching is not convenient.")
(license license:bsd-3)))
+(define-public ghc-edit-distance
+ (package
+ (name "ghc-edit-distance")
+ (version "0.2.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/edit-distance"
+ "/edit-distance-" version ".tar.gz"))
+ (sha256
+ (base32 "0jkca97zyv23yyilp3jydcrzxqhyk27swhzh82llvban5zp8b21y"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-random" ,ghc-random)
+ ("ghc-test-framework" ,ghc-test-framework)
+ ("ghc-quickcheck" ,ghc-quickcheck)
+ ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
+ (home-page "https://github.com/phadej/edit-distance")
+ (synopsis "Levenshtein and restricted Damerau-Levenshtein edit distances")
+ (description
+ "This package provides optimized functions to determine the edit
+distances for fuzzy matching, including Levenshtein and restricted
+Damerau-Levenshtein algorithms.")
+ (license license:bsd-3)))
+
(define-public ghc-tasty-kat
(package
(name "ghc-tasty-kat")
@@ -7056,6 +7335,27 @@ other transformers.")
(base32
"0a364zfcm17mhpy0c4ms2j88sys4yvgd6071qsgk93la2wjm8mkr"))))))
+(define-public ghc-stmonadtrans
+ (package
+ (name "ghc-stmonadtrans")
+ (version "0.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://hackage.haskell.org/package/STMonadTrans"
+ "/STMonadTrans-" version ".tar.gz"))
+ (sha256
+ (base32 "1nr26fnmi5fdjc6d00w13kjhmfyvb5b837d0006w4dj0yxndaksp"))))
+ (build-system haskell-build-system)
+ (inputs
+ `(("ghc-mtl" ,ghc-mtl)))
+ (home-page "https://hackage.haskell.org/package/STMonadTrans")
+ (synopsis "Monad transformer version of the ST monad")
+ (description
+ "This package provides a monad transformer version of the @code{ST} monad
+for strict state threads.")
+ (license license:bsd-3)))
+
(define-public ghc-findbin
(package
(name "ghc-findbin")
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 292c4e2eee..7be1b195f1 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -16,6 +16,7 @@
;;; Copyright © 2016, 2017 Kei Kebreau <kei@openmailbox.org>
;;; Copyright © 2017 ng0 <ng0@infotropique.org>
;;; Copyright © 2017 Hartmut Goebel <h.goebel@crazy-compilers.com>
+;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -48,6 +49,8 @@
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
#:use-module (gnu packages graphics)
+ #:use-module (gnu packages gtk)
+ #:use-module (gnu packages lua)
#:use-module (gnu packages maths)
#:use-module (gnu packages mcrypt)
#:use-module (gnu packages perl)
@@ -61,6 +64,8 @@
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
+ #:use-module (guix build-system python)
+ #:use-module (guix build-system r)
#:use-module (srfi srfi-1))
(define-public libpng
@@ -177,6 +182,29 @@ APNG patch provides APNG support to libpng.")
(sha256
(base32 "1n2lrzjkm5jhfg2bs10q398lkwbbx742fi27zgdgx0x23zhj0ihg"))))))
+(define-public r-png
+ (package
+ (name "r-png")
+ (version "0.1-7")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "png" version))
+ (sha256
+ (base32
+ "0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"))))
+ (build-system r-build-system)
+ (inputs
+ `(("libpng" ,libpng)
+ ("zlib" ,zlib)))
+ (home-page "http://www.rforge.net/png/")
+ (synopsis "Read and write PNG images")
+ (description
+ "This package provides an easy and simple way to read, write and display
+bitmap images stored in the PNG format. It can read and write both files and
+in-memory raw vectors.")
+ ;; Any of these GPL versions.
+ (license (list license:gpl2 license:gpl3))))
+
(define-public pngcrunch
(package
(name "pngcrunch")
@@ -1157,3 +1185,46 @@ medical image data, e.g. magnetic resonance image (MRI) and functional MRI
(fMRI) brain images.")
(home-page "http://niftilib.sourceforge.net")
(license license:public-domain)))
+
+(define-public gpick
+ (package
+ (name "gpick")
+ (version "0.2.5")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/thezbyg/gpick/archive/"
+ name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0mxvxk15xhk2i5vfavjhnkk4j3bnii0gpf8di14rlbpq070hd5rs"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("boost" ,boost)
+ ("gettext" ,gnu-gettext)
+ ("pkg-config" ,pkg-config)
+ ("scons" ,scons)))
+ (inputs
+ `(("expat" ,expat)
+ ("gtk2" ,gtk+-2)
+ ("lua" ,lua-5.2)))
+ (arguments
+ `(#:tests? #f
+ #:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'fix-lua-reference
+ (lambda _
+ (substitute* "SConscript"
+ (("lua5.2") "lua-5.2"))
+ #t))
+ (replace 'build
+ (lambda _
+ (zero? (system* "scons"))))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((dest (assoc-ref outputs "out")))
+ (zero? (system* "scons" "install"
+ (string-append "DESTDIR=" dest)))))))))
+ (home-page "http://www.gpick.org/")
+ (synopsis "Color picker")
+ (description "Gpick is an advanced color picker and palette editing tool.")
+ (license license:bsd-3)))
diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm
index 8e17307543..3bd705fa2f 100644
--- a/gnu/packages/imagemagick.scm
+++ b/gnu/packages/imagemagick.scm
@@ -175,7 +175,11 @@ script.")
"/GraphicsMagick-" version ".tar.xz")))
(sha256
(base32
- "122zgs96dqrys62mnh8x5yvfff6km4d3yrnvaxzg3mg5sprib87v"))))
+ "122zgs96dqrys62mnh8x5yvfff6km4d3yrnvaxzg3mg5sprib87v"))
+ (patches
+ (search-patches "graphicsmagick-CVE-2017-12935.patch"
+ "graphicsmagick-CVE-2017-12936.patch"
+ "graphicsmagick-CVE-2017-12937.patch"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
diff --git a/gnu/packages/irc.scm b/gnu/packages/irc.scm
index 1d6ac82e5f..0f68cc532a 100644
--- a/gnu/packages/irc.scm
+++ b/gnu/packages/irc.scm
@@ -301,14 +301,14 @@ using a mouse. It is customizable and extensible with plugins and scripts.")
(define-public limnoria
(package
(name "limnoria")
- (version "2017.03.30")
+ (version "2017.08.18")
(source
(origin
(method url-fetch)
(uri (pypi-uri "limnoria" version))
(sha256
(base32
- "1q0y6iglg1cbhimgjz3afws51as3shy6rd61dck7jfm25y8pi6g8"))))
+ "1hij444l45mjli8i67iyd3syf263ijj1l0cm3irqjjxv5r3f9zjj"))))
(build-system python-build-system)
(inputs
`(("python-pytz" ,python-pytz)
diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index 47dd4f256b..da68487b01 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -1064,7 +1064,7 @@ bootstrapping purposes.")
(license license:gpl2+)))
(define-public icedtea-7
- (let* ((version "2.6.10")
+ (let* ((version "2.6.11")
(drop (lambda (name hash)
(origin
(method url-fetch)
@@ -1082,7 +1082,7 @@ bootstrapping purposes.")
version ".tar.xz"))
(sha256
(base32
- "0am945k2zqrka2xn7lb5grmkad4lwncnhnwk8iq6f269birzsj8w"))
+ "1ibp6ybqnf8g7mbs45bkbv44dwz4h2w9gr4rh15yvr1m8lqkq1i0"))
(modules '((guix build utils)))
(snippet
'(substitute* "Makefile.in"
@@ -1475,25 +1475,25 @@ bootstrapping purposes.")
(native-inputs
`(("openjdk-src"
,(drop "openjdk"
- "02klsxp9hlf5sial6mxpiq53hmrhlrg6x774j7bjjfhb7hpdvadh"))
+ "1zhr4l9kxnbzghcsgjk3vmih9qpg1wrr9qry7fx04l97svp1ylhd"))
("corba-drop"
,(drop "corba"
- "1vbly6khri241xda05gnwkpf2fk41d96ls96ximi084mx0a3w5rd"))
+ "108v15ncb2rnsyzgzncjlm1f57d1sv60zd9qbpas8kqmvpp8r0gz"))
("jaxp-drop"
,(drop "jaxp"
- "0s8zln64vdwdxwlw1vpfzm8xbpyhgsv3nqjmnv7y36qpsszg27a5"))
+ "0zcpcmm3g1s7m31glrbw3ys7azi97ixcvbyxd40y9xzdja3jyr52"))
("jaxws-drop"
,(drop "jaxws"
- "0myd66bv8ib8krzgqv754bc564rd8xwpwabvf7my1apyb86vap3n"))
+ "1gkqm0p3sr8d0xpki3fhf7cvmgqxx8ambgl5f3jx2plfnhsg96d2"))
("jdk-drop"
,(drop "jdk"
- "10b4lfv10vba07zblw0wii7mhrfhf32pf7410x5nz2q0smgszl2h"))
+ "1d9fjnzdx4m6gwkvmj2n097ag0mvkhm3lldaxjki8x8c6a5clknf"))
("langtools-drop"
,(drop "langtools"
- "0lvncxb5qzrlqkflrnd0l8vwy155cwj1jb07rkq10z2vx0bq7lq2"))
+ "0zscdp9arcq7gr8j7jq4m75gq0w1i3ryxpdnrc8fl0msh4w2s2k5"))
("hotspot-drop"
,(drop "hotspot"
- "0q6mdgbbd3681y3n0z1v783irdjhhi73z6sn5csczpyhjm318axb"))
+ "1y6vnssn5y50x27g4ypdb5wwpmi7zf7jdi8gqbymkwf6n8p5y1d6"))
("ant" ,ant-bootstrap)
("attr" ,attr)
("coreutils" ,coreutils)
@@ -1543,7 +1543,7 @@ IcedTea build harness.")
(license license:gpl2+))))
(define-public icedtea-8
- (let* ((version "3.5.0")
+ (let* ((version "3.5.1")
(drop (lambda (name hash)
(origin
(method url-fetch)
@@ -1552,7 +1552,7 @@ IcedTea build harness.")
"/icedtea8/" version "/" name ".tar.xz"))
(sha256 (base32 hash))))))
(package (inherit icedtea-7)
- (version "3.5.0")
+ (version "3.5.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1560,7 +1560,7 @@ IcedTea build harness.")
version ".tar.xz"))
(sha256
(base32
- "1dfa7ing61i73m6wfx2kx59q44npqdiy7cd66xmslyy0xh09xa4s"))
+ "1j8iv0cdk9fkh3yb5is7z29m9k3s89w6y9090538j6aa7p4nmalf"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1632,34 +1632,34 @@ IcedTea build harness.")
`(("jdk" ,icedtea-7 "jdk")
("openjdk-src"
,(drop "openjdk"
- "0di7gmyis1p6rpksmff1q21ck85i51sqcl9awqyvg7xiwggq0wsm"))
+ "0a6yrq8y1zkzc7hm2l28rm3vzy5izfxhmmhhhvc91lhfclnqcd2q"))
("aarch32-drop"
,(drop "aarch32"
"0cway5a5hcfyh4pzl9zz5xr7lil4gsliy6r5iqbaasd2d9alvqiq"))
("corba-drop"
,(drop "corba"
- "1xk64bsdxfc66g61d8k6xrhqj8rc56vzrlxx6s23gkr45604bl8x"))
+ "031sc6byd8lqvz3cd07phm13pqrxalxk9f3a2q8pim5n4sbsy0qb"))
("jaxp-drop"
,(drop "jaxp"
- "1iw9xa4s5kxijdqpf0ih4x6g0lw142yy11vrzfmz6n1y4b0ic7iw"))
+ "1815jaj0k0w1s0g0jr1ahkajp1jx2qlb08i6l9ha4wyqqyp49a4n"))
("jaxws-drop"
,(drop "jaxws"
- "14p2l4j985wh5cdd4hfmm18gb5wmry73yiysdx9pg3aqpkw9qms7"))
+ "0vh4f85cxhqvabzg86ycpz02519cdzgsn5dr75k22rkmbbxnbbl6"))
("jdk-drop"
,(drop "jdk"
- "1qwmb80vicn7jd801f3j23lyil7327ks54d3s87czwv8h108m40r"))
+ "196ycqz4d9kknc6b219q4ib83l1kkl6w6l1cznw9bzaafyynqa35"))
("langtools-drop"
,(drop "langtools"
- "175pi2privhcvn9sbam5mhhgcvicfqbgldiw25fi5g80fqkkrza9"))
+ "0ssnadlr5cxhmj06nmni34kdynix1sjhcvjzahm5yzfd7dfllmgy"))
("hotspot-drop"
,(drop "hotspot"
- "1qdyn02p4ssl3p7z9aadhzl9qdam2q7pvwddz2jkyvajcrxb0mpi"))
+ "0f7fxf0s9kadvs80hm5ga72pyp9r0fvl8zm1wmd1wrks8kl79sd6"))
("nashorn-drop"
,(drop "nashorn"
- "0kzmpf5b9kwhrvnwn7m20q3dzz8s82jjvbac84606x3ff97xk5gr"))
+ "0m95qgnd4z6p0xp9m06ihss7skx2yrm7xw69jsjsrxpriy1shiwy"))
("shenandoah-drop"
,(drop "shenandoah"
- "0kjc5m5jj2bzyy1vj1s59khv5xjfnkxy18z0g4bdb1kb3g21c5wi"))
+ "0yjlcgp6mldp30hmkfl68mdwlbg3gb0m6xd5y7srczni7cln5f3i"))
,@(fold alist-delete (package-native-inputs icedtea-7)
'("jdk" "openjdk-src" "corba-drop" "jaxp-drop" "jaxws-drop"
"jdk-drop" "langtools-drop" "hotspot-drop")))))))
diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm
index a25de39ed8..292b537a12 100644
--- a/gnu/packages/kde-frameworks.scm
+++ b/gnu/packages/kde-frameworks.scm
@@ -44,6 +44,7 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gnupg)
+ #:use-module (gnu packages gperf)
#:use-module (gnu packages graphics)
#:use-module (gnu packages gstreamer)
#:use-module (gnu packages image)
@@ -70,7 +71,7 @@
(define-public extra-cmake-modules
(package
(name "extra-cmake-modules")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -79,7 +80,7 @@
name "-" version ".tar.xz"))
(sha256
(base32
- "1r3dyvrv77xrpjlzpa6yazwkknirvx1ccvdyj9x0mlk4vfi05nh5"))))
+ "1jr7nmhh4kyz1g454qkldfhimfjvvylqa19zna5iak08bkq8q696"))))
(build-system cmake-build-system)
(native-inputs
`(("qtbase" ,qtbase))) ; For tests (needs qmake)
@@ -254,7 +255,7 @@ Phonon-GStreamer is a backend based on the GStreamer multimedia library.")
(define-public attica
(package
(name "attica")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -263,7 +264,7 @@ Phonon-GStreamer is a backend based on the GStreamer multimedia library.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0l8gmsmpwzg6nzwwlnsdl6r6qkhnhirpmrkag9xpd2sbmy734x53"))))
+ "13jqk4w9crh8pca6n9334l1gb8bmwf86pa36k0mfh5j19dq72g2p"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -286,7 +287,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/")
(define-public bluez-qt
(package
(name "bluez-qt")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -295,7 +296,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/")
name "-" version ".tar.xz"))
(sha256
(base32
- "040gs2a1fx996gqdx2pwxh00szb1vb85055z946nqvqfn01921df"))))
+ "1x6nj7vsn0sp9rckzkcbl6fwm7qzj5w98w2qys1fndb1spl7av8s"))))
(build-system cmake-build-system)
(native-inputs
`(("dbus" ,dbus)
@@ -306,12 +307,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/")
(arguments
`(#:configure-flags
'("-DINSTALL_UDEV_RULE:BOOL=OFF")
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (setenv "DBUS_FATAL_WARNINGS" "0")
- (zero? (system* "dbus-launch" "ctest" ".")))))))
+ #:tests? #f)) ; DBUS_FATAL_WARNINGS=0 still yields 7/8 tests failing
(home-page "https://community.kde.org/Frameworks")
(synopsis "QML wrapper for BlueZ")
(description "bluez-qt is a Qt-style library for accessing the bluez
@@ -321,7 +317,7 @@ Bluetooth stack. It is used by the KDE Bluetooth stack, BlueDevil.")
(define-public breeze-icons
(package
(name "breeze-icons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -330,7 +326,7 @@ Bluetooth stack. It is used by the KDE Bluetooth stack, BlueDevil.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1znzlggb6yrkw5rr2n75g7cfv9x5p9d55hss09c4i79lxrh1bk4a"))))
+ "17nr2phd0nxyx49igvl170ksikapgc4365z26pw0dmmw41llcbxw"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -350,7 +346,7 @@ It is the default icon theme for the KDE Plasma 5 desktop.")
(define-public kapidox
(package
(name "kapidox")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -359,7 +355,7 @@ It is the default icon theme for the KDE Plasma 5 desktop.")
name "-" version ".tar.xz"))
(sha256
(base32
- "190d5z6i71jrvfna6vnlim2p9rgc33s1fxl0zarn276683i1rwvg"))))
+ "1xwkaamifxjghv158rwslndfd9z70rm9ixnp1mmkgw8radwsqg5v"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f)) ; has no test target
@@ -392,7 +388,7 @@ documentation.")
(define-public karchive
(package
(name "karchive")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -401,7 +397,7 @@ documentation.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0g8jskdar2znviwh9bs3kia093wgfnhl04x4jcg2rvh78ylkpvxw"))))
+ "1599lql0kcx705313bfvbazr7rayr6vsiwrpiq6iwljzc7lli1im"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -426,7 +422,7 @@ GZip format, via a subclass of QIODevice.")
(define-public kcodecs
(package
(name "kcodecs")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -435,10 +431,11 @@ GZip format, via a subclass of QIODevice.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0k51s4qlf0kq6i8f3wrsz5lrkzjqb1j26hrmlmg57vn91r58iash"))))
+ "0kmk97b5vbnyb3xjxwmg3l47aka8mkf50g4p7wvr096qwplffbva"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
+ ("gperf" ,gperf)
("qttools" ,qttools)))
(inputs
`(("qtbase" ,qtbase)))
@@ -461,7 +458,7 @@ Internet).")
(define-public kconfig
(package
(name "kconfig")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -470,7 +467,7 @@ Internet).")
name "-" version ".tar.xz"))
(sha256
(base32
- "0blbx6b3fk6p8cv2iywk2avn9w1411bb0g5wwv456a9ggi01988x"))))
+ "1f0y2gmwy05b17clr7vg1zp18l1z0fd757v02ha7cwd64yznyr5d"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -528,7 +525,7 @@ propagate their changes to their respective configuration files.")
(define-public kcoreaddons
(package
(name "kcoreaddons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -537,7 +534,7 @@ propagate their changes to their respective configuration files.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1ybr4bv8rhp4cxpf8mfsc4dk0klzrfh1z8g2cw6zasmksxmmwi90"))))
+ "0a45sz11d7b2d8sbr9z57mv337nbhd94fiqk3issw470n0y46g3y"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -566,7 +563,7 @@ many more.")
(define-public kdbusaddons
(package
(name "kdbusaddons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -575,7 +572,7 @@ many more.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1skblxfnjhbyiwavsfhksc2ybc2sikw3xr0js6mlfbpmvqzghn6h"))
+ "0745arkp4wnpwyhjq02h7lfac049cmlg5qwhf96i7ss0w54vch4i"))
(patches (search-patches "kdbusaddons-kinit-file-name.patch"))))
(build-system cmake-build-system)
(native-inputs
@@ -611,7 +608,7 @@ as well as an API to create KDED modules.")
(define-public kdnssd
(package
(name "kdnssd")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -620,7 +617,7 @@ as well as an API to create KDED modules.")
name "-" version ".tar.xz"))
(sha256
(base32
- "082mdim9wykdap4fmjfayk443rbarsk1p8cn3mspx2nw047yja80"))))
+ "03rd6znn2qwndn4m3bb03slwyic06ry535rawgyh06lfps0fcc5z"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -638,7 +635,7 @@ infrastructure.")
(define-public kguiaddons
(package
(name "kguiaddons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -647,7 +644,7 @@ infrastructure.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1nmlwvy2jdmh0m6bmahvk68vl2rs9s28c10dkncpi6gvhsdkigqx"))))
+ "13g6nlw8fk135i6z3f8ichy8whxd6v4rycg80dlvm25h66rg6vn5"))))
(build-system cmake-build-system)
;; TODO: Build packages for the Python bindings. Ideally this will be
;; done for all versions of python guix supports. Requires python,
@@ -676,7 +673,7 @@ interfaces in the areas of colors, fonts, text, images, keyboard input.")
(define-public ki18n
(package
(name "ki18n")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -685,7 +682,7 @@ interfaces in the areas of colors, fonts, text, images, keyboard input.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0glvmmy01mp6hnix79aichgwjq842kgf5q5zynkg6mch85y4ary7"))))
+ "1c1sy4pbhlwsajs2972brdmma5val72gkil6k0a0f58nfvvg952d"))))
(build-system cmake-build-system)
(propagated-inputs
`(("gettext" ,gettext-minimal)
@@ -719,7 +716,7 @@ translation scripting.")
(define-public kidletime
(package
(name "kidletime")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -728,7 +725,7 @@ translation scripting.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0z8x6iz52y2m8llsp2q4qayxswkzay7ksimzy47crfag442bw24g"))))
+ "01m4q3l2yq83f2dpbv6jry7cjkj6bqdgfpy5b8byaf1gf9w2firs"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -746,7 +743,7 @@ or user activity.")
(define-public kitemmodels
(package
(name "kitemmodels")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -755,7 +752,7 @@ or user activity.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1liq1ppa7xb1dcncv25c2a0xy3l9bvb2a56cff90c0b0vwr239q5"))))
+ "1nlpzzp4m0ghfz1p2hrwn4lbhjhxc8b8q8kbzqbh9hmwmimbzzrr"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -805,7 +802,7 @@ model to observers
(define-public kitemviews
(package
(name "kitemviews")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -814,7 +811,7 @@ model to observers
name "-" version ".tar.xz"))
(sha256
(base32
- "054accbis471zj1gbfxbc99062r2hvpb04i6w3r8fa4ml8s6brqk"))))
+ "17r7vnlyiiifhrz4gb4fifshn1jb4c67lhadczi8d301rzk7wwsm"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -840,7 +837,7 @@ to flat and hierarchical lists.")
(define-public kplotting
(package
(name "kplotting")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -849,7 +846,7 @@ to flat and hierarchical lists.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1ffy9b08128ym024wlfgnzk52vpy0mbaa91dhndpr40qcz0i67sh"))))
+ "0k4s0qvhjm9h1bmg16l32g4bsdrp2jrcila4dgzvrb56447px0zw"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -875,7 +872,7 @@ pixel units.")
(define-public ksyntaxhighlighting
(package
(name "ksyntaxhighlighting")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -884,7 +881,7 @@ pixel units.")
"syntax-highlighting-" version ".tar.xz"))
(sha256
(base32
- "0ryfwblvzj9rd5jj7l8scmbb49ygzk77ng05hrznsipczin2cjw8"))))
+ "1l56pb84z7sy0qq8xkd5w5v5418bm9n4qds0vd39ch655d47bl72"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -918,12 +915,13 @@ highlighting engine. It's meant as a building block for text editors as well
as for simple highlighted text rendering (e.g. as HTML), supporting both
integration with a custom editor as well as a ready-to-use
@code{QSyntaxHighlighter} sub-class.")
+ (properties `((upstream-name . "syntax-highlighting")))
(license license:lgpl2.1+)))
(define-public kwayland
(package
(name "kwayland")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -932,7 +930,7 @@ integration with a custom editor as well as a ready-to-use
name "-" version ".tar.xz"))
(sha256
(base32
- "1zxb9ram47vbiik8h0czyvacrdiijhnslkpcm61l4r1rb0ybb0ib"))))
+ "0d4c8l8k38pgj73kzlf1hsq52w31wy9wgpwph1bv0cq5yn2rjiyr"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -962,7 +960,7 @@ represented by a QPoint or a QSize.")
(define-public kwidgetsaddons
(package
(name "kwidgetsaddons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -971,7 +969,7 @@ represented by a QPoint or a QSize.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0hw87iig75mfgl5p3ph6zkwap31h357bm7rlyv5d9nnp10bq0hfg"))))
+ "1jmk377r1h4is2il7chh6bq8wbj21psf4b1yiw84iivg38vlpid4"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1009,7 +1007,7 @@ configuration pages, message boxes, and password requests.")
(define-public kwindowsystem
(package
(name "kwindowsystem")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1018,7 +1016,7 @@ configuration pages, message boxes, and password requests.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1sp2x7afhw19vmhdp2qyrmljz8h0875xjk95n8c5gzypk7sr0l83"))))
+ "0pd2n0j5pdv1x7wf4mwcpimnah73g6l0xidhqbpg37p829jix2k2"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1074,7 +1072,7 @@ lower level classes for interaction with the X Windowing System.")
(define-public modemmanager-qt
(package
(name "modemmanager-qt")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1083,7 +1081,7 @@ lower level classes for interaction with the X Windowing System.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1cf5nsc8h7djvr19fm5dphzplh1wm3asvn0a7r71spg0i7lzi89h"))))
+ "1fqf43kvj1v1mcdlbfxbh6sh3ycvg35aml2ywh2a684iz4qzq1aq"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1112,7 +1110,7 @@ messages.")
(define-public networkmanager-qt
(package
(name "networkmanager-qt")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1121,7 +1119,7 @@ messages.")
name "-" version ".tar.xz"))
(sha256
(base32
- "05s0irvkg0g57acriablyha2wb9c7w3xhq223vdddjqpcdx0pnkl"))))
+ "01px9n97gyvyyfg3dp1k7dik9fprgx9i28hg8wjr2rb5dlr99jd1"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1151,7 +1149,7 @@ which are used in DBus communication.")
(define-public oxygen-icons
(package
(name "oxygen-icons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1160,7 +1158,7 @@ which are used in DBus communication.")
name "5" "-" version ".tar.xz"))
(sha256
(base32
- "0cmxxssir5zbp5nlxq81h2xfd6wrxbbkydyw93dby7r56isl7ga5"))))
+ "1rns7n93f83qp5q11a7r5y87y0hvc0q95ar57cqy0fxsqrg4614h"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1176,7 +1174,7 @@ which are used in DBus communication.")
(define-public solid
(package
(name "solid")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1185,7 +1183,7 @@ which are used in DBus communication.")
name "-" version ".tar.xz"))
(sha256
(base32
- "02kz21p3p1s1rg7gf34fr6ynhji6x97yvsfdpvbfxbhijabbh4ib"))))
+ "1gb9gnp1a11q5abl97b7sq1if2rqcrcs0f33sakpxf1z9y0ppg8l"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -1214,7 +1212,7 @@ system.")
(define-public sonnet
(package
(name "sonnet")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1223,7 +1221,7 @@ system.")
name "-" version ".tar.xz"))
(sha256
(base32
- "06gxrh8rb75ydkqxk5dhlmwndnczp264jx588ryfwlf3vlnk99vs"))))
+ "0sb6i464riadgb2q73nj0vy6xavr2m1sszrvghr20nj7i64f3kk0"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1242,7 +1240,7 @@ ASpell and HUNSPELL.")
(define-public threadweaver
(package
(name "threadweaver")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1251,7 +1249,7 @@ ASpell and HUNSPELL.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1gylpl283qf1jcfyib4q5xwnpdq13hnd2cp2i7xjazdw2jp40zhr"))))
+ "1hb3721r1zbbyj211886sfkcxk18k0rsdhcg9ssagx10f29rpxx4"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1272,7 +1270,7 @@ uses a job-based interface to queue tasks and execute them in an efficient way."
(define-public kauth
(package
(name "kauth")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1281,7 +1279,7 @@ uses a job-based interface to queue tasks and execute them in an efficient way."
name "-" version ".tar.xz"))
(sha256
(base32
- "06cw1bsp7inh5wglajm8aahy17p35ixgnijb7d74gjqzbj4cv93d"))))
+ "0ciz28bvbvxlv0iz0cgs31x2m1czkki21ypzqj8rg2ix8jw2p65w"))))
(build-system cmake-build-system)
(native-inputs
`(("dbus" ,dbus)
@@ -1319,7 +1317,7 @@ utilities.")
(define-public kcompletion
(package
(name "kcompletion")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1328,7 +1326,7 @@ utilities.")
name "-" version ".tar.xz"))
(sha256
(base32
- "18hvdk5b1nkh6b3vx0jajri57rl266b0qjsiwirh5wmjc81xbpcw"))))
+ "0qhjkqmd1jjy50hlzsdxwgnjwpfdrz3njl5n88h3nzp83yjv1ljz"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1355,7 +1353,7 @@ integrated it into your application's other widgets.")
(define-public kcrash
(package
(name "kcrash")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1364,7 +1362,7 @@ integrated it into your application's other widgets.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1cshay7dhbqgh62nq85vd9sm20gq9s9f70mdnzjjh1q7cajybkp3"))))
+ "16k2pwf3s3adgayd9vq7kk8c5gnq9g6wra4psrvs3a3c5k5am5y0"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1390,7 +1388,7 @@ application crashes.")
(define-public kdoctools
(package
(name "kdoctools")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1399,7 +1397,7 @@ application crashes.")
name "-" version ".tar.xz"))
(sha256
(base32
- "145jjhsd0whmcj91zbjz2b1jyj4wasw60hbwyd4xvqds8cp0l02h"))))
+ "0gbc5qqim6262hvkl9pf6rynnblxb3hsw3c4ars03ip7n761y0zl"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1438,7 +1436,7 @@ from DocBook files.")
(define-public kfilemetadata
(package
(name "kfilemetadata")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1447,7 +1445,7 @@ from DocBook files.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1rvlg6by8daiq5ff3qlxcw9k2iq4qicsj0c8a00xfy3w4h9ip9h5"))))
+ "17mbm6pdi6ac61kj2qzxf7y3rbxhxg9rwqr7qy766gh3img2vq8p"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -1490,7 +1488,7 @@ by applications to write metadata.")
(define-public kimageformats
(package
(name "kimageformats")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1499,7 +1497,7 @@ by applications to write metadata.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0q9ng4clqk2dqw43nk1pmq1d61rahc3qr4dmg4y3kjvz3ahnnijw"))))
+ "1knha6wjzjs0vnkljwpfinzg3hg2jyh9c07ifqvd47cprl96ickg"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1511,6 +1509,11 @@ by applications to write metadata.")
(arguments
`(#:phases
(modify-phases %standard-phases
+ ;; This test fails regularly, delete offending portion
+ (add-after 'unpack 'neuter-read-xcf-test
+ (lambda _
+ (delete-file "autotests/read/xcf/simple-rgba-gimp-2.8.10.png")
+ (delete-file "autotests/read/xcf/simple-rgba-gimp-2.8.10.xcf")))
(add-before 'check 'check-setup
(lambda _
;; make Qt render "offscreen", required for tests
@@ -1534,7 +1537,7 @@ formats.")
(define-public kjobwidgets
(package
(name "kjobwidgets")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1543,7 +1546,7 @@ formats.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0lrx761vf947mb2q1l2jgi0wgwj8cz2nn1xg0j38bh99sgddmzpf"))))
+ "1162dxhpspd7p1735npp0amrxr5b0j467f5651k2rv6mvqfmqr4b"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1562,7 +1565,7 @@ asynchronous jobs.")
(define-public knotifications
(package
(name "knotifications")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1571,7 +1574,7 @@ asynchronous jobs.")
name "-" version ".tar.xz"))
(sha256
(base32
- "12z5hza0n5zr6mv3gkwhzb8zkrmk6dvgq8hrzwm8rzkgphjr6pi9"))))
+ "0gvv6jal7n4m3y30ragjlyhghq3y2782d422im9klxqzlgdgvkb6"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1608,7 +1611,7 @@ covers feedback and persistent events.")
(define-public kpackage
(package
(name "kpackage")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1617,7 +1620,7 @@ covers feedback and persistent events.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0wdymhcrjggxb7andz36cfk9f240vvbq5yahlxyhfp9z69lriw5q"))))
+ "1ikf55q2pk8vm70pqm7rmakja309zjh9z1lg0xqslq1pqd6xki7s"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1646,7 +1649,7 @@ were traditional plugins.")
(define-public kpty
(package
(name "kpty")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1655,7 +1658,7 @@ were traditional plugins.")
name "-" version ".tar.xz"))
(sha256
(base32
- "00k5hhz7nf3nf47xb003ni1chi03imyrfajap6ay4zp90l8fr950"))))
+ "0wb873r1ycgi11s0qx3lhvz54703yz5sax6fb6wdmri5c05gzd5a"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1683,7 +1686,7 @@ and communicating with them using a pty.")
(define-public kunitconversion
(package
(name "kunitconversion")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1692,7 +1695,7 @@ and communicating with them using a pty.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0v4x0flbfavrzfiqh71mdkqgp1fzk4f52msvq6w60i2s3sz7hcsm"))))
+ "1qvq61sbv9naj5ndi5xjwx7ami0xa6bqiajr912kbbbp2257cjsi"))))
(build-system cmake-build-system)
(arguments
`(#:phases
@@ -1726,7 +1729,7 @@ gallons).")
(define-public baloo
(package
(name "baloo")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1735,7 +1738,7 @@ gallons).")
name "-" version ".tar.xz"))
(sha256
(base32
- "0z53lnniq9xdk09d73z0p1xs1qmaf71m4znm4hmq956yg4yqa1ya"))))
+ "19sl07lhjrri40vfi8wl6azgmg08lgfb98xx110j6spjbbbnww79"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kcoreaddons" ,kcoreaddons)
@@ -1770,6 +1773,12 @@ gallons).")
;; make Qt render "offscreen", required for tests
(setenv "QT_QPA_PLATFORM" "offscreen")
#t))
+ (add-after 'unpack 'remove-failing-test
+ ;; This test fails on i686 and aarch64
+ (lambda _
+ (substitute* "autotests/unit/file/CMakeLists.txt"
+ (("metadatamovertest") ""))
+ #t))
(replace 'check
(lambda _
(setenv "DBUS_FATAL_WARNINGS" "0")
@@ -1784,7 +1793,7 @@ maintaining an index of the contents of your files.")
(define-public kactivities
(package
(name "kactivities")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1793,7 +1802,7 @@ maintaining an index of the contents of your files.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0dg6bkdxf4sicij4szmi55npn6chp0sfmw27qi1s582ymqzjgf5m"))))
+ "005xvzp10kvwcsl2w6ghcqgqnr2rdvv9w61i4y44y25vcb85g26v"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1831,7 +1840,7 @@ with other frameworks.")
(define-public kactivities-stats
(package
(name "kactivities-stats")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1840,7 +1849,7 @@ with other frameworks.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1dfaq4hsd9wm1ka45dkxbl9wwr7s5ixbnnghqwxhl7a60imc680r"))))
+ "09zsdzf77palmww7x3dzinl0hxrm4z0q0yc2fmf0d7z6cfl695y2"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1861,7 +1870,7 @@ by which applications, and what documents have been linked to which activity.")
(define-public kbookmarks
(package
(name "kbookmarks")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1870,7 +1879,7 @@ by which applications, and what documents have been linked to which activity.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0ggn4rz8ch82ph64q6yik9fb1mp6kmsd7n33p769zl1lw7fldn0v"))))
+ "0l6rkj0b7hk2wg6dypj1dkl8pcd1vx89gaiixbhkd3vf7jp46n41"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kwidgetsaddons" ,kwidgetsaddons)))
@@ -1904,7 +1913,7 @@ using the XBEL format.")
(define-public kcmutils
(package
(name "kcmutils")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1913,7 +1922,7 @@ using the XBEL format.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1b52lwn7qjqrn06va7j1jswlzs6bx0drs90myf3607k52ffbf4hy"))))
+ "1ik1505f16swsmvrv62dacis33f1ccnmkw3zbhb84vbrbqyskvzx"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kconfigwidgets" ,kconfigwidgets)
@@ -1943,7 +1952,7 @@ KCModules can be created with the KConfigWidgets framework.")
(define-public kconfigwidgets
(package
(name "kconfigwidgets")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1952,7 +1961,7 @@ KCModules can be created with the KConfigWidgets framework.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0h4kappsffrp2qgg8wza1ybgah2dlcgpz591llfvaz31ldsml9hk"))))
+ "001d1nj8q6xpl71rwm15rnvy5ajyxpvknvf4ic7p5pbik3021bs6"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kauth" ,kauth)
@@ -1985,7 +1994,7 @@ their settings.")
(define-public kdeclarative
(package
(name "kdeclarative")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -1994,7 +2003,7 @@ their settings.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1mfj32p631zvwz9ldk8536ifb4n825zxbhx69bfllhw2vn1am7z2"))))
+ "1ish46m2dpnpqjnf8g660clcg7ky65w11cbk2m79pwyhqvhxgggj"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kconfig" ,kconfig)
@@ -2046,7 +2055,7 @@ that offer bindings to some of the Frameworks.")
(define-public kded
(package
(name "kded")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2055,7 +2064,7 @@ that offer bindings to some of the Frameworks.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0qy4w7bcg60gyf6y6c11kqcshnld55a8w4fzglpwgqfbliyi5yzq"))))
+ "162s5qx2qb0bi889f8jjvd3ci31azd8iwp25i04vwi0lzglwb8gy"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2079,7 +2088,7 @@ started on demand.")
(define-public kdesignerplugin
(package
(name "kdesignerplugin")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2088,7 +2097,7 @@ started on demand.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1jnarg7wrhdjfq73q4wplazxsz927mpf0l6m0i4akq4dlp1b7aah"))))
+ "1197003bqcdpsyn6faasr2nhaadh7ryg92vjpqim78af3vwinsdw"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2117,7 +2126,7 @@ ini-style description files.")
(define-public kdesu
(package
(name "kdesu")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2126,7 +2135,7 @@ ini-style description files.")
name "-" version ".tar.xz"))
(sha256
(base32
- "04mx0d6kf8slgkkgbna3cyv4c491jvlwcwqxc7zikz0i03l341id"))))
+ "1qfhkzk6l9rfdyiad8y6k30zlhziz3q2dxvxkmnghxmkg98yhdza"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kpty" ,kpty)))
@@ -2148,7 +2157,7 @@ with su and ssh respectively.")
(define-public kemoticons
(package
(name "kemoticons")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2157,7 +2166,7 @@ with su and ssh respectively.")
name "-" version ".tar.xz"))
(sha256
(base32
- "02h12qy0w6mcgkczi3md1znnvp7r47l8h416nd080ljpsydalgx8"))))
+ "1cx978s1dm3v1jh4aymncxs44iizdqp174dqg9m5mf043fcvvinq"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kservice" ,kservice)))
@@ -2189,7 +2198,7 @@ emoticons coming from different providers.")
(define-public kglobalaccel
(package
(name "kglobalaccel")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2198,7 +2207,7 @@ emoticons coming from different providers.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1i32dq70qxjbfvlw0wqxvqvl6ysydmpg3zbiflff4z1qrmvmpw6a"))))
+ "1d84q3r6q5n2lclym9a9m1brfqnq3p3dykfpzvhcba3bjxh3cdsb"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2232,7 +2241,7 @@ window does not need focus for them to be activated.")
(define-public kiconthemes
(package
(name "kiconthemes")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2241,7 +2250,7 @@ window does not need focus for them to be activated.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0hbl82r6qc8dh9v9n9xjkx966czkq5yjxx2rx7sbilj2p9v3saii"))))
+ "1j7mgfsvxa24nf1d9xyn2jv9y9j523vghsvsm73x8d3ijibchfxq"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2279,7 +2288,7 @@ in applications using the KDE Frameworks.")
(define-public kinit
(package
(name "kinit")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2288,7 +2297,7 @@ in applications using the KDE Frameworks.")
name "-" version ".tar.xz"))
(sha256
(base32
- "08429kjihpaip73wszr3rsii8sdlwgm3kxx7g0hpjhkj9d2jq3m1"))))
+ "0b7dyy4hqyf6wk7gg2l23ldnji2zl8vzyj5wd5qh4yi7rdl6js5r"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2326,7 +2335,7 @@ makes starting KDE applications faster and reduces memory consumption.")
(define-public kio
(package
(name "kio")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2335,7 +2344,7 @@ makes starting KDE applications faster and reduces memory consumption.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1i23ld5b9gafh2x3lv79jbggbd92xyhk7rg3n765w3bsfpg2ijva"))))
+ "0nxchbhs8p2d4243dyp7qa65g1p6r3ic2h6dz7w0aa0qzsy8wi29"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kbookmarks" ,kbookmarks)
@@ -2401,7 +2410,7 @@ KIO enabled infrastructure.")
(define-public knewstuff
(package
(name "knewstuff")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2410,7 +2419,7 @@ KIO enabled infrastructure.")
name "-" version ".tar.xz"))
(sha256
(base32
- "19d53ylwr92dzl9agk4j765zvb897rcm55z7pr6841aj58jk9b82"))))
+ "1scnxhxx4g8j4wml6x8i5v00rpaxyzzcm7vqbra2axbql5d8g8ny"))))
(build-system cmake-build-system)
(propagated-inputs
`(("attica" ,attica)
@@ -2458,7 +2467,7 @@ specification.")
(define-public knotifyconfig
(package
(name "knotifyconfig")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2467,7 +2476,7 @@ specification.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0lwl22vq770jyp45j32s0ss8yiqdwbink6cdhkbapg3pzbiwklyk"))))
+ "14kjckynszv8015p17j578l3knmkmw25d8r8ks4wavgj3db9bik5"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2500,7 +2509,7 @@ notifications which can be embedded in your application.")
(define-public kparts
(package
(name "kparts")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2509,7 +2518,7 @@ notifications which can be embedded in your application.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1a5n0f7ljdc2bm6vggzwbvpblyxjqn9m9pam70iab964pqqalgp7"))))
+ "0jrd8idkz8nhkda2rwgf8rysqngiv4r5ajmrzp2kfz1pr91a6l5h"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kio" ,kio)
@@ -2551,7 +2560,7 @@ widgets with a user-interface defined in terms of actions.")
(define-public kpeople
(package
(name "kpeople")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2560,7 +2569,7 @@ widgets with a user-interface defined in terms of actions.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0krm74dl80s48nhiygga4dvkvqqimxdx4nczbk4qvj7j1g9p2rsh"))))
+ "1qgp4wqp985ac1m9wakpsvk3c2driwkwrjkc3aic7dyr1p456qsf"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2594,7 +2603,7 @@ to easily extend the contacts collection.")
(define-public krunner
(package
(name "krunner")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2603,7 +2612,7 @@ to easily extend the contacts collection.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0n527p708k719zgmvvbmp20xmg72f85cll05q05p4h317g7wz6i5"))))
+ "171qbhr1yszl2gcffm47p5wiwj71w9yhvk6srhvfpiwfyh61a4ld"))))
(build-system cmake-build-system)
(propagated-inputs
`(("plasma-framework" ,plasma-framework)))
@@ -2624,6 +2633,7 @@ to easily extend the contacts collection.")
("kpackage" ,kpackage)
("kservice" ,kservice)
("kwidgetsaddons" ,kwidgetsaddons)
+ ("kwindowsystem" ,kwindowsystem)
("kxmlgui" ,kxmlgui)
("qtbase" ,qtbase)
("qtdeclarative" ,qtdeclarative)
@@ -2649,7 +2659,7 @@ typed.")
(define-public kservice
(package
(name "kservice")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2658,7 +2668,7 @@ typed.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0sikwn49s2iq1nj518q55m2p0hvdvwm98cpf0dkjb1z1v6fgjc37"))))
+ "1zxs5yzd3rmy33vsip4c4igk9g38kzaggw8c29sxmgr8vgdrnvhr"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kconfig" ,kconfig)
@@ -2694,7 +2704,7 @@ types or handled by application specific code.")
(define-public ktexteditor
(package
(name "ktexteditor")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2703,7 +2713,7 @@ types or handled by application specific code.")
name "-" version ".tar.xz"))
(sha256
(base32
- "182a0swfgdqr0faq3ksk6hlfvdi1afd0hpys5vayjjf263m19xxw"))))
+ "0y04s1nwkf0np6iymjxf0jssin28qw2901kpb3iw8gd52ni5rrks"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kparts" ,kparts)))
@@ -2764,7 +2774,7 @@ library.")
(define-public ktextwidgets
(package
(name "ktextwidgets")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2773,7 +2783,7 @@ library.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1hri34b373bww5gv14qli2nm77k05pk170nbb2vv2zvzv93g25gw"))))
+ "1p8ns75sbnapm6ds16hx36q9vlnz9phgy28rx0gm1ckxqvm4yzr5"))))
(build-system cmake-build-system)
(propagated-inputs
`(("ki18n" ,ki18n)
@@ -2811,7 +2821,7 @@ It supports rich text as well as plain text.")
(define-public kwallet
(package
(name "kwallet")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2820,7 +2830,7 @@ It supports rich text as well as plain text.")
name "-" version ".tar.xz"))
(sha256
(base32
- "08z3ddsam5n5qn2svscp4hgksf6qd1h8lqw1v382p01nnmhxadz5"))))
+ "1l7jl3y0rzx2whnbp6w5p6kg71vwyccp2nwxxgcxr6541m0nihsz"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2852,7 +2862,7 @@ the passwords on KDE work spaces.")
(define-public kxmlgui
(package
(name "kxmlgui")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2861,7 +2871,7 @@ the passwords on KDE work spaces.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1v8m6qzjqg3ic14a5ki37bf13kifzcbhly68zcxgs5b92hr953iy"))))
+ "0jrvjlxkg9knj61b2gj2w6l96jlmww9kn4ij808ir35365x3cdg2"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kconfig" ,kconfig)
@@ -2904,7 +2914,7 @@ descriptions for integrating actions from plugins.")
(define-public kxmlrpcclient
(package
(name "kxmlrpcclient")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2913,7 +2923,7 @@ descriptions for integrating actions from plugins.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0kp3ab50m5jl2jgw883ip67s6gs0l3saprzrqa9r3hydn2c4s3md"))))
+ "1jn9v86dpfx43qcdcsp6lpnga9q6aa5vxjkkg4wg0wbxmw4w9gvq"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kio" ,kio)))
@@ -2947,7 +2957,7 @@ setUrl, setUserAgent and call.")
(define-public plasma-framework
(package
(name "plasma-framework")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -2956,7 +2966,7 @@ setUrl, setUserAgent and call.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0waicqskfwc8xpmrym165hwlfv6nzbwc783sac5vrhbyk4bwk8x9"))))
+ "0kamvxfzrbx3msn0cp3k20clqchz9jg5wlazz3h6p6zmrk5v16bh"))))
(build-system cmake-build-system)
(propagated-inputs
`(("kpackage" ,kpackage)
@@ -3042,7 +3052,7 @@ script engines.")
(define-public kde-frameworkintegration
(package
(name "kde-frameworkintegration")
- (version "5.34.0")
+ (version "5.37.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -3051,7 +3061,7 @@ script engines.")
"frameworkintegration-" version ".tar.xz"))
(sha256
(base32
- "0hq1r2znjzy0wzm3nsclqmih1aia5300bsf87a2l4919q0ildb20"))))
+ "0pcy3hjqbahbx65yxz5bl0h2ah4y3fb7mq3pj1rrp2cpp92s135a"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3099,7 +3109,7 @@ workspace.")
(define-public kdelibs4support
(package
(name "kdelibs4support")
- (version "5.34.0")
+ (version "5.37.0")
(source
(origin
(method url-fetch)
@@ -3108,7 +3118,7 @@ workspace.")
(version-major+minor version) "/portingAids/"
name "-" version ".tar.xz"))
(sha256
- (base32 "0q9jjsjcvc43va4yvfay2xi40vb95lnqhgzavpqcndzjihixwmi0"))))
+ (base32 "1zz100m1sqfmg3ni7023b99qn79jhdd2ryw6534axl5zgn0sglh9"))))
(build-system cmake-build-system)
(native-inputs
`(("dbus" ,dbus)
@@ -3210,7 +3220,7 @@ http://community.kde.org/Frameworks/Porting_Notes should help with this.")
(define-public khtml
(package
(name "khtml")
- (version "5.34.0")
+ (version "5.37.0")
(source
(origin
(method url-fetch)
@@ -3219,13 +3229,14 @@ http://community.kde.org/Frameworks/Porting_Notes should help with this.")
(version-major+minor version) "/portingAids/"
name "-" version ".tar.xz"))
(sha256
- (base32 "0j490jfnz8pbfl1i11wj514nw0skpnxr2fvi9pqpfql9lfhsanxv"))))
+ (base32 "1n0mx2xy9n5ffhvh58z3kn61aa7dhppsrwgxk697pybqy1h45ah2"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
("perl", perl)))
(inputs
`(("giflib" ,giflib)
+ ("gperf" ,gperf)
("karchive" ,karchive)
("kcodecs" ,kcodecs)
("kglobalaccel" ,kglobalaccel)
@@ -3268,7 +3279,7 @@ technology and using KJS for JavaScript support.")
(define-public kjs
(package
(name "kjs")
- (version "5.34.0")
+ (version "5.37.0")
(source
(origin
(method url-fetch)
@@ -3277,7 +3288,7 @@ technology and using KJS for JavaScript support.")
(version-major+minor version) "/portingAids/"
name "-" version ".tar.xz"))
(sha256
- (base32 "18b7k1hi73iqn06c1ryy9lcmvscr9d08q7n1wwkrn0l2xmy05xsq"))))
+ (base32 "046hy8ji4i6p2xp5gnqa8dk82sv6sbh4xg67y79i82bbi97dvq9b"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3301,7 +3312,7 @@ support.")
(define-public kjsembed
(package
(name "kjsembed")
- (version "5.34.0")
+ (version "5.37.0")
(source
(origin
(method url-fetch)
@@ -3310,7 +3321,7 @@ support.")
(version-major+minor version) "/portingAids/"
name "-" version ".tar.xz"))
(sha256
- (base32 "17w8i370pqks1fj3pcziz7j014chnc6yi7md7w2p4xprw54pbmbk"))))
+ (base32 "0w2wk5azf1b45db58qj0cdc1l056x9s1xcd09ibavx5xmdvq6br0"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3330,7 +3341,7 @@ QObjects, so you can script your applications.")
(define-public kmediaplayer
(package
(name "kmediaplayer")
- (version "5.34.0")
+ (version "5.37.0")
(source
(origin
(method url-fetch)
@@ -3339,7 +3350,7 @@ QObjects, so you can script your applications.")
(version-major+minor version) "/portingAids/"
name "-" version ".tar.xz"))
(sha256
- (base32 "1mq87qf86sdvwhas4w7rspd221qp4x9kds4nd0lpldiay4483k86"))))
+ (base32 "0fqxrkcwwzg11zsax9q169lisnfp9jsqg4ccd6xvv8kpkz3g04jp"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3376,7 +3387,7 @@ KParts instead.")
(define-public kross
(package
(name "kross")
- (version "5.34.0")
+ (version "5.37.0")
(source
(origin
(method url-fetch)
@@ -3385,7 +3396,7 @@ KParts instead.")
(version-major+minor version) "/portingAids/"
name "-" version ".tar.xz"))
(sha256
- (base32 "092qz8vyiialv9fvk4wvn8mrfhz5i5hnbq0xnz6nvi1pk3db6bxq"))))
+ (base32 "06pk6f6v82pd7x9rsmkhkp5r9sgcbrc503lqckl8d7argbb7j4k1"))))
(build-system cmake-build-system)
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm
index 0a416148cb..a65a61f96b 100644
--- a/gnu/packages/kde.scm
+++ b/gnu/packages/kde.scm
@@ -258,7 +258,7 @@ used in KDE development tools Kompare and KDevelop.")
(define-public libksysguard
(package
(name "libksysguard")
- (version "5.8.2")
+ (version "5.10.4")
(source
(origin
(method url-fetch)
@@ -266,7 +266,7 @@ used in KDE development tools Kompare and KDevelop.")
"/libksysguard-" version ".tar.xz"))
(sha256
(base32
- "158n30wbpsgbw3axhhsc58hnwhwdd02j3zc9hhcybmnbkfl5c96l"))))
+ "01w0laywva0p0ar2lvr1k5000bhjikjfxsb4f6p30qswrchrmrh3"))))
(native-inputs
`(("extra-cmake-modules" ,extra-cmake-modules)
("pkg-config" ,pkg-config)))
@@ -303,7 +303,7 @@ used in KDE development tools Kompare and KDevelop.")
(replace 'check
(lambda _ ;other tests require a display and therefore fail
(zero? (system* "ctest" "-R" "chronotest")))))))
- (home-page "https://www.kde.org/info/plasma-5.8.2.php")
+ (home-page "https://www.kde.org/info/plasma-5.10.4.php")
(synopsis "Network enabled task and system monitoring")
(description "KSysGuard can obtain information on system load and
manage running processes. It obtains this information by interacting
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index c27ddf042a..16a8d257d0 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -789,7 +789,7 @@ and to return information on pronunciations, meanings and synonyms.")
(define-public libreoffice
(package
(name "libreoffice")
- (version "5.3.2.2")
+ (version "5.3.5.2")
(source
(origin
(method url-fetch)
@@ -798,7 +798,7 @@ and to return information on pronunciations, meanings and synonyms.")
"http://download.documentfoundation.org/libreoffice/src/"
(version-prefix version 3) "/libreoffice-" version ".tar.xz"))
(sha256 (base32
- "1bcy1wx2cixawpd6cpivakwcwv8ryyy25kdw0fbci319p5gaj4c8"))))
+ "1sknmb9bhm8mxyfycqbwng1jqs4avyp1ffcla7dhlpwqs1aqxvx5"))))
(build-system gnu-build-system)
(native-inputs
`(;; autoreconf is run by the LibreOffice build system, since after
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 8ae74cbcb7..e271ef6b11 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -101,6 +101,7 @@
#:use-module (gnu packages xorg)
#:use-module (gnu packages groff)
#:use-module (gnu packages selinux)
+ #:use-module (gnu packages swig)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
@@ -366,8 +367,8 @@ It has been modified to remove all non-free binary blobs.")
(define %intel-compatible-systems '("x86_64-linux" "i686-linux"))
-(define %linux-libre-version "4.12.7")
-(define %linux-libre-hash "1sjkxkcikdgl2w5h7c5pfyqwi29g69dxp4s2z2yavw7aicc91xfq")
+(define %linux-libre-version "4.12.8")
+(define %linux-libre-hash "1p4ah15qs94id2yj6lhp6abdycvgp7lvn3ccsfs7f6n34hdij0cm")
(define-public linux-libre
(make-linux-libre %linux-libre-version
@@ -376,14 +377,14 @@ It has been modified to remove all non-free binary blobs.")
#:configuration-file kernel-config))
(define-public linux-libre-4.9
- (make-linux-libre "4.9.43"
- "0fxid4xmnrcq966vz2wsb6spw3i02pvqp2hv8xfrx7dr3hfs9nrr"
+ (make-linux-libre "4.9.44"
+ "0a92bsb5d0pyhyn5ypc8ashwxixhivdadvikcpv31376j842fmj2"
%intel-compatible-systems
#:configuration-file kernel-config))
(define-public linux-libre-4.4
- (make-linux-libre "4.4.82"
- "01bn0vn6i22hhwiqfh29m1cir1jrvz643lz13war8k9l6h0dmmwy"
+ (make-linux-libre "4.4.83"
+ "1fv3j0w0v82aa9s9n4a4qyrxc5bpq2ag9riawlabx57a380x1n62"
%intel-compatible-systems
#:configuration-file kernel-config))
@@ -1466,7 +1467,52 @@ transparently through a bridge.")
(base32
"1r3lw3hjvqxi5zqyq2w1qadm3gisd9nlf71dkl4yplacmssnhm3h"))))
(build-system gnu-build-system)
- (native-inputs `(("flex" ,flex) ("bison" ,bison)))
+ (native-inputs
+ `(("bison" ,bison)
+ ("flex" ,flex)
+ ("pkg-config" ,pkg-config)
+ ("swig" ,swig)
+ ("libnl3-doc"
+ ,(origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/thom311/libnl/releases/download/libnl"
+ (string-join (string-split version #\.) "_")
+ "/libnl-doc-" version ".tar.gz"))
+ (sha256
+ (base32 "0srab805yj8wb13l64qjyp3mdbqapxg5vk46v3zlhhzpmxqw8j7r"))))))
+ (inputs
+ `(("python-2" ,python-2)
+ ("python-3" ,python-3)))
+ (outputs '("out" "doc" "python2" "python3"))
+ (arguments
+ `(#:modules ((guix build gnu-build-system)
+ (guix build utils)
+ (srfi srfi-1))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'install-python
+ (lambda* (#:key outputs #:allow-other-keys)
+ (define (python-inst python)
+ (let ((ldflags (format #f "LDFLAGS=-Wl,-rpath=~a/lib"
+ (assoc-ref %outputs "out")))
+ (pyout (assoc-ref %outputs python)))
+ (and
+ (zero? (system (format #f "~a ~a setup.py build"
+ ldflags python pyout)))
+ (zero?
+ (system (format #f "~a ~a setup.py install --prefix=~a"
+ ldflags python pyout)))
+ (zero? (system* python "setup.py" "clean")))))
+ (with-directory-excursion "./python"
+ (every python-inst '("python2" "python3")))))
+ (add-after 'install 'install-doc
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((dest (string-append (assoc-ref outputs "doc")
+ "/share/doc/libnl")))
+ (mkdir-p dest)
+ (zero? (system* "tar" "xf" (assoc-ref inputs "libnl3-doc")
+ "--strip-components=1" "-C" dest))))))))
(home-page "http://www.infradead.org/~tgr/libnl/")
(synopsis "NetLink protocol library suite")
(description
@@ -4263,3 +4309,34 @@ tool, to understand the type of environment a process runs in, and for
comparing system environments.")
(home-page "http://github.com/jamesodhunt/procenv/")
(license license:gpl3+)))
+
+(define-public libfabric
+ (package
+ (name "libfabric")
+ (version "1.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
+ version "/libfabric-" version ".tar.bz2"))
+ (sha256
+ (base32 "19l2m1frna1l765z4j7wl8hp4rb9wrh0hy5496685hd183hmy5pv"))))
+ (build-system gnu-build-system)
+ (inputs `(("rdma-core" ,rdma-core)
+ ;; TODO: add psm, psm(2).
+ ("libnl" ,libnl)))
+ (home-page "https://ofiwg.github.io/libfabric/")
+ (synopsis "Open Fabric Interfaces")
+ (description
+ "OpenFabrics Interfaces (OFI) is a framework focused on exporting fabric
+communication services to applications. OFI is best described as a collection
+of libraries and applications used to export fabric services. The key
+components of OFI are: application interfaces, provider libraries, kernel
+services, daemons, and test applications.
+
+Libfabric is a core component of OFI. It is the library that defines and
+exports the user-space API of OFI, and is typically the only software that
+applications deal with directly. It works in conjunction with provider
+libraries, which are often integrated directly into libfabric.")
+ (license (list license:bsd-2 license:gpl2)))) ;dual
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index a81f6156ab..537157fca6 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -585,6 +585,14 @@ computations.")
#:configure-flags '("--enable-shared")
#:phases
(modify-phases %standard-phases
+ ;; This is inspired by two of Debian's patches.
+ (add-before 'configure 'add-more-aarch64-support
+ (lambda _
+ (substitute* '("mfhdf/ncgen/ncgen.l"
+ "mfhdf/ncgen/ncgenyy.c"
+ "mfhdf/libsrc/netcdf.h.in")
+ (("AIX5L64") "__aarch64__"))
+ #t))
(add-before 'configure 'patchbuild
(lambda _
(substitute*
@@ -596,7 +604,8 @@ computations.")
-R\\$\\(abs_top_builddir\\)/mfhdf/xdr/\\.libs") "")
(("@HDF_BUILD_SHARED_TRUE@AM_LDFLAGS = \
-R\\$\\(abs_top_builddir\\)/mfhdf/libsrc/\\.libs \
--R\\$\\(abs_top_builddir\\)/hdf/src/\\.libs \\$\\(XDR_ADD\\)") "")))))))
+-R\\$\\(abs_top_builddir\\)/hdf/src/\\.libs \\$\\(XDR_ADD\\)") ""))
+ #t)))))
(home-page "https://www.hdfgroup.org/products/hdf4/")
(synopsis
"Library and multi-object file format for storing and managing data")
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 54fdd35ad5..d6423aa6fc 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -126,6 +126,8 @@ bind processes, and much more.")
(inputs
`(("hwloc" ,hwloc "lib")
("gfortran" ,gfortran)
+ ("libfabric" ,libfabric)
+ ("rdma-core" ,rdma-core)
("valgrind" ,valgrind)))
(native-inputs
`(("pkg-config" ,pkg-config)
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index dcb48fb200..29ab50fc4c 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -952,7 +952,7 @@ your own lessons.")
(define-public powertabeditor
(package
(name "powertabeditor")
- (version "2.0.0-alpha9")
+ (version "2.0.0-alpha10")
(source (origin
(method url-fetch)
(uri (string-append
@@ -961,7 +961,7 @@ your own lessons.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1zjdz1qpkl83xr6dkap8airqcyjs3mxc5dzfyhrrvkyr7dics7ii"))
+ "1fr14ql0yhlqvh6y08yaanszm2nvca5i50rqym396kfvga3ky18x"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -996,20 +996,13 @@ add_library( rapidjson INTERFACE IMPORTED )"))
(replace 'check
(lambda _
(zero? (system* "bin/pte_tests"
- ;; FIXME: one test fails.
- "exclude:Formats/PowerTabOldImport/Directions"))))
- (add-after 'unpack 'set-target-directories
- (lambda _
- (substitute* "cmake/PTE_Executable.cmake"
- (("set\\( install_dir.*")
- "set( install_dir bin )\n"))
- (substitute* "cmake/PTE_Paths.cmake"
- (("set\\( PTE_DATA_DIR .*")
- "set( PTE_DATA_DIR share/powertabeditor )\n"))
- ;; Tests hardcode the data directory as "data"
- (substitute* "test/CMakeLists.txt"
- (("\\$\\{PTE_DATA_DIR\\}") "data"))
- #t))
+ ;; FIXME: these tests fail
+ "exclude:Actions/EditStaff"
+ "exclude:Formats/PowerTabOldImport/MergeMultiBarRests"
+ "exclude:Score/ViewFilter/FilterRule"
+ "exclude:Score/ViewFilter/ViewFilter"
+ "exclude:Formats/PowerTabOldImport/Directions"
+ ))))
(add-before 'configure 'remove-third-party-libs
(lambda* (#:key inputs #:allow-other-keys)
;; Link with required static libraries, because we're not
@@ -3171,3 +3164,37 @@ MuseScore can also play back scores through the built-in sequencer and SoundFont
sample library.")
(home-page "https://musescore.org")
(license license:gpl2)))
+
+(define-public dssi
+ (package
+ (name "dssi")
+ (version "1.1.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://sourceforge/dssi/dssi/" version
+ "/dssi-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0kl1hzhb7cykzkrqcqgq1dk4xcgrcxv0jja251aq4z4l783jpj7j"))))
+ (build-system gnu-build-system)
+ (inputs
+ `(("alsa-lib" ,alsa-lib)
+ ("jack-2" ,jack-2)
+ ("ladspa" ,ladspa)
+ ("libsamplerate" ,libsamplerate)
+ ("libsndfile" ,libsndfile)
+ ("liblo" ,liblo)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (synopsis "Audio plugin API for soft synths and effects")
+ (description "DSSI is a plugin API for software instruments with user
+interfaces, permitting them to be hosted in-process by audio applications.
+It is intended to be simple, GUI-toolkit-agnostic, and slightly biased
+towards familiarity with MIDI. The DSSI distribution package contains
+a JACK/ALSA-sequencer reference host and some plugins as well as the
+specification and header.")
+ (home-page "http://dssi.sourceforge.net/")
+ ;; The DSSI interface is LGPL2.1+, some tests and examples are GPL2+.
+ ;; The vast majority of examples are in the public domain.
+ (license (list license:lgpl2.1+ license:gpl2+))))
diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index 6dd6046461..c329c463f3 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2016 Raimon Grau <raimonster@gmail.com>
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2016 John Darrington <jmd@gnu.org>
-;;; Copyright © 2016 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2016, 2017 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016, 2017 ng0 <ng0@infotropique.org>
;;; Copyright © 2016, 2017 Arun Isaac <arunisaac@systemreboot.net>
@@ -55,6 +55,7 @@
#:use-module (gnu packages dejagnu)
#:use-module (gnu packages flex)
#:use-module (gnu packages gettext)
+ #:use-module (gnu packages glib)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages gtk)
#:use-module (gnu packages libidn)
@@ -66,7 +67,9 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages qt)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages ssh)
#:use-module (gnu packages textutils)
#:use-module (gnu packages tls)
#:use-module (gnu packages valgrind)
@@ -480,30 +483,31 @@ which can be used to encrypt a password with @code{crypt(3)}.")
(define-public wireshark
(package
(name "wireshark")
- (version "2.2.7")
- (synopsis "Network traffic analyzer")
+ (version "2.4.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.wireshark.org/download/src/wireshark-"
- version ".tar.bz2"))
+ version ".tar.xz"))
(sha256
(base32
- "1dfvhra5v6xhzbp097qsxi0zvirw0srbasl4v1wjf58v49idz7b8"))))
- (build-system glib-or-gtk-build-system)
- (inputs `(("bison" ,bison)
- ("c-ares" ,c-ares)
- ("flex" ,flex)
+ "011vvrj76z1azkpvyy2j40b1x1z56ymld508zfc4xw3gh8dv82w9"))))
+ (build-system gnu-build-system)
+ (inputs `(("c-ares" ,c-ares)
+ ("glib" ,glib)
("gnutls" ,gnutls)
- ("gtk+" ,gtk+)
("libcap" ,libcap)
("libgcrypt" ,libgcrypt)
("libnl" ,libnl)
("libpcap" ,libpcap)
- ("lua" ,lua-5.2)
+ ("libssh" ,libssh)
+ ("libxml2" ,libxml2)
+ ("lua" ,lua-5.2) ;Lua 5.3 unsupported
("krb5" ,mit-krb5)
("openssl" ,openssl)
("portaudio" ,portaudio)
+ ("qtbase" ,qtbase)
+ ("qttools" ,qttools)
("sbc" ,sbc)
("zlib" ,zlib)))
(native-inputs `(("perl" ,perl)
@@ -514,19 +518,21 @@ which can be used to encrypt a password with @code{crypt(3)}.")
(list (string-append "--with-c-ares=" (assoc-ref %build-inputs "c-ares"))
(string-append "--with-krb5=" (assoc-ref %build-inputs "krb5"))
(string-append "--with-libcap=" (assoc-ref %build-inputs "libcap"))
+ (string-append "--with-libssh=" (assoc-ref %build-inputs "libssh"))
(string-append "--with-lua=" (assoc-ref %build-inputs "lua"))
(string-append "--with-pcap=" (assoc-ref %build-inputs "libpcap"))
(string-append "--with-portaudio="
- (assoc-ref %build-inputs "portaudio"))
+ (assoc-ref %build-inputs "portaudio"))
(string-append "--with-sbc=" (assoc-ref %build-inputs "sbc"))
(string-append "--with-ssl=" (assoc-ref %build-inputs "openssl"))
- (string-append "--with-zlib=" (assoc-ref %build-inputs "zlib"))
- "--without-qt")))
+ (string-append "--with-zlib=" (assoc-ref %build-inputs "zlib")))))
+ (home-page "https://www.wireshark.org/")
+ (synopsis "Network traffic analyzer")
(description "Wireshark is a network protocol analyzer, or @dfn{packet
sniffer}, that lets you capture and interactively browse the contents of
network frames.")
- (license license:gpl2+)
- (home-page "https://www.wireshark.org/")))
+ (home-page "https://www.wireshark.org/")
+ (license license:gpl2+)))
(define-public fping
(package
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 3c1a4d9567..9b31f905e4 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -411,15 +411,15 @@ symlinks to the files in a common directory such as /usr/local.")
(define-public rpm
(package
(name "rpm")
- (version "4.12.0.1")
+ (version "4.13.0.1")
(source (origin
(method url-fetch)
- (uri (string-append "http://rpm.org/releases/rpm-4.12.x/rpm-"
+ (uri (string-append "http://ftp.rpm.org/releases/rpm-"
+ (version-major+minor version) ".x/rpm-"
version ".tar.bz2"))
(sha256
(base32
- "0a82ym8phx7g0f3k6smvxnvzh7yv857l42xafk49689kzhld5pbp"))
- (patches (search-patches "rpm-CVE-2014-8118.patch"))))
+ "03cvbwbfrhm0fa02j7828k1qp05hf2m0fradwcf2nqhrsjkppz17"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--with-external-db" ;use the system's bdb
diff --git a/gnu/packages/patches/bcftools-regidx-unsigned-char.patch b/gnu/packages/patches/bcftools-regidx-unsigned-char.patch
new file mode 100644
index 0000000000..af5bc160f5
--- /dev/null
+++ b/gnu/packages/patches/bcftools-regidx-unsigned-char.patch
@@ -0,0 +1,16 @@
+Description: Fix test-regidx argument parsing on archs with unsigned char
+ On architectures where char is unsigned "c >= 0" was always true.
+Author: Adrian Bunk <bunk@debian.org>
+Bug-Debian: https://bugs.debian.org/865060
+
+--- a/test/test-regidx.c
++++ b/test/test-regidx.c
+@@ -336,7 +336,7 @@
+ {"seed",1,0,'s'},
+ {0,0,0,0}
+ };
+- char c;
++ int c;
+ int seed = (int)time(NULL);
+ while ((c = getopt_long(argc, argv, "hvs:",loptions,NULL)) >= 0)
+ {
diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch
new file mode 100644
index 0000000000..2cb3d46f62
--- /dev/null
+++ b/gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch
@@ -0,0 +1,28 @@
+This patch comes from http://hg.code.sf.net/p/graphicsmagick/code/rev/cd699a44f188.
+
+diff -ur a/coders/png.c b/coders/png.c
+--- a/coders/png.c 2017-07-04 17:32:08.000000000 -0400
++++ b/coders/png.c 2017-08-19 11:16:20.933969362 -0400
+@@ -4101,11 +4101,17 @@
+ mng_info->image=image;
+ }
+
+- if ((mng_info->mng_width > 65535L) || (mng_info->mng_height
+- > 65535L))
+- (void) ThrowException(&image->exception,ImageError,
+- WidthOrHeightExceedsLimit,
+- image->filename);
++ if ((mng_info->mng_width > 65535L) ||
++ (mng_info->mng_height > 65535L))
++ {
++ (void) LogMagickEvent(CoderEvent,GetMagickModule(),
++ " MNG width or height is too large: %lu, %lu",
++ mng_info->mng_width,mng_info->mng_height);
++ MagickFreeMemory(chunk);
++ ThrowReaderException(CorruptImageError,
++ ImproperImageHeader,image);
++ }
++
+ FormatString(page_geometry,"%lux%lu+0+0",mng_info->mng_width,
+ mng_info->mng_height);
+ mng_info->frame.left=0;
diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch
new file mode 100644
index 0000000000..7036f37438
--- /dev/null
+++ b/gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch
@@ -0,0 +1,16 @@
+This patch comes from http://hg.code.sf.net/p/graphicsmagick/code/rev/be898b7c97bd.
+
+diff -ur a/coders/wmf.c b/coders/wmf.c
+--- a/coders/wmf.c 2016-09-05 15:20:23.000000000 -0400
++++ b/coders/wmf.c 2017-08-19 10:38:08.984187264 -0400
+@@ -2719,8 +2719,8 @@
+ if(image->exception.severity != UndefinedException)
+ ThrowException2(exception,
+ CoderWarning,
+- ddata->image->exception.reason,
+- ddata->image->exception.description);
++ image->exception.reason,
++ image->exception.description);
+
+ if(logging)
+ (void) LogMagickEvent(CoderEvent,GetMagickModule(),"leave ReadWMFImage()");
diff --git a/gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch b/gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch
new file mode 100644
index 0000000000..71af9ffe59
--- /dev/null
+++ b/gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch
@@ -0,0 +1,28 @@
+This patch comes from http://hg.code.sf.net/p/graphicsmagick/code/rev/95d00d55e978.
+
+diff -ur a/coders/sun.c b/coders/sun.c
+--- a/coders/sun.c 2016-05-30 13:19:54.000000000 -0400
++++ b/coders/sun.c 2017-08-18 18:00:00.191023610 -0400
+@@ -1,5 +1,5 @@
+ /*
+-% Copyright (C) 2003-2015 GraphicsMagick Group
++% Copyright (C) 2003-2017 GraphicsMagick Group
+ % Copyright (C) 2002 ImageMagick Studio
+ % Copyright 1991-1999 E. I. du Pont de Nemours and Company
+ %
+@@ -577,6 +577,7 @@
+ for (bit=7; bit >= 0; bit--)
+ {
+ index=((*p) & (0x01 << bit) ? 0x01 : 0x00);
++ VerifyColormapIndex(image,index);
+ indexes[x+7-bit]=index;
+ q[x+7-bit]=image->colormap[index];
+ }
+@@ -587,6 +588,7 @@
+ for (bit=7; bit >= (long) (8-(image->columns % 8)); bit--)
+ {
+ index=((*p) & (0x01 << bit) ? 0x01 : 0x00);
++ VerifyColormapIndex(image,index);
+ indexes[x+7-bit]=index;
+ q[x+7-bit]=image->colormap[index];
+ }
diff --git a/gnu/packages/patches/lz4-fix-test-failures.patch b/gnu/packages/patches/lz4-fix-test-failures.patch
deleted file mode 100644
index d38357d402..0000000000
--- a/gnu/packages/patches/lz4-fix-test-failures.patch
+++ /dev/null
@@ -1,136 +0,0 @@
-These two patches fix some bugs in lz4's test suite:
-
-https://github.com/lz4/lz4/issues/308
-
-Patches copied from upstream source repository:
-
-https://github.com/lz4/lz4/commit/b89cac7b2e92b792af98bb0a12e4d14684d07629
-https://github.com/lz4/lz4/commit/0dfb0b9dad2a8cb7cc347d2139bf9b84de7e1481
-
-From b89cac7b2e92b792af98bb0a12e4d14684d07629 Mon Sep 17 00:00:00 2001
-From: Eric Siegerman <pub08-git@davor.org>
-Date: Tue, 14 Feb 2017 14:17:06 -0500
-Subject: [PATCH] Don't use "foo && false || true"
-
-Replace it with either:
- test ! -f $FILE_THAT_SHOULD_NOT_EXIST
-or:
- ! $COMMAND_THAT_SHOULD_FAIL
-
-as appropriate.
----
- tests/Makefile | 38 +++++++++++++++++++-------------------
- 1 file changed, 19 insertions(+), 19 deletions(-)
-
-diff --git a/tests/Makefile b/tests/Makefile
-index 77e6ae7..ebab278 100644
---- a/tests/Makefile
-+++ b/tests/Makefile
-@@ -236,17 +236,17 @@ test-lz4-basic: lz4 datagen unlz4 lz4cat
- ./datagen -g256MB | $(LZ4) -vqB4D | $(LZ4) -t
- @echo "hello world" > tmp
- $(LZ4) --rm -f tmp
-- ls -ls tmp && false || true # must fail (--rm)
-- ls -ls tmp.lz4
-- $(PRGDIR)/lz4cat tmp.lz4 # must display hello world
-- ls -ls tmp.lz4
-+ test ! -f tmp # must fail (--rm)
-+ test -f tmp.lz4
-+ $(PRGDIR)/lz4cat tmp.lz4 # must display hello world
-+ test -f tmp.lz4
- $(PRGDIR)/unlz4 --rm tmp.lz4
-- ls -ls tmp
-- ls -ls tmp.lz4 && false || true # must fail (--rm)
-- ls -ls tmp.lz4.lz4 && false || true # must fail (unlz4)
-- $(PRGDIR)/lz4cat tmp # pass-through mode
-- ls -ls tmp
-- ls -ls tmp.lz4 && false || true # must fail (lz4cat)
-+ test -f tmp
-+ test ! -f tmp.lz4 # must fail (--rm)
-+ test ! -f tmp.lz4.lz4 # must fail (unlz4)
-+ $(PRGDIR)/lz4cat tmp # pass-through mode
-+ test -f tmp
-+ test ! -f tmp.lz4 # must fail (lz4cat)
- $(LZ4) tmp # creates tmp.lz4
- $(PRGDIR)/lz4cat < tmp.lz4 > tmp3 # checks lz4cat works with stdin (#285)
- $(DIFF) -q tmp tmp3
-@@ -262,22 +262,22 @@ test-lz4-hugefile: lz4 datagen
-
- test-lz4-testmode: lz4 datagen
- @echo "\n ---- bench mode ----"
-- $(LZ4) -bi1
-+ $(LZ4) -bi1
- @echo "\n ---- test mode ----"
-- ./datagen | $(LZ4) -t && false || true
-- ./datagen | $(LZ4) -tf && false || true
-+ ! ./datagen | $(LZ4) -t
-+ ! ./datagen | $(LZ4) -tf
- @echo "\n ---- pass-through mode ----"
-- ./datagen | $(LZ4) -d > $(VOID) && false || true
-- ./datagen | $(LZ4) -df > $(VOID)
-+ ! ./datagen | $(LZ4) -d > $(VOID)
-+ ./datagen | $(LZ4) -df > $(VOID)
- @echo "Hello World !" > tmp1
- $(LZ4) -dcf tmp1
- @echo "from underground..." > tmp2
- $(LZ4) -dcfm tmp1 tmp2
- @echo "\n ---- test cli ----"
-- $(LZ4) file-does-not-exist && false || true
-- $(LZ4) -f file-does-not-exist && false || true
-- $(LZ4) -fm file1-dne file2-dne && false || true
-- $(LZ4) -fm file1-dne file2-dne && false || true
-+ ! $(LZ4) file-does-not-exist
-+ ! $(LZ4) -f file-does-not-exist
-+ ! $(LZ4) -fm file1-dne file2-dne
-+ ! $(LZ4) -fm file1-dne file2-dne
-
- test-lz4-opt-parser: lz4 datagen
- @echo "\n ---- test opt-parser ----"
---
-2.12.2
-
-From 0dfb0b9dad2a8cb7cc347d2139bf9b84de7e1481 Mon Sep 17 00:00:00 2001
-From: "Dmitry V. Levin" <ldv@altlinux.org>
-Date: Sun, 5 Mar 2017 23:20:10 +0000
-Subject: [PATCH] Fix test-lz4-basic
-
-When no output filename is specified and stdout is not a terminal,
-lz4 doesn't attempt to guess an output filename and uses stdout for
-output.
-
-This change fixes test-lz4-basic when run without a terminal
-by specifying output filenames.
----
- tests/Makefile | 6 +++---
- 1 file changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/tests/Makefile b/tests/Makefile
-index ebab278..d68c700 100644
---- a/tests/Makefile
-+++ b/tests/Makefile
-@@ -235,19 +235,19 @@ test-lz4-basic: lz4 datagen unlz4 lz4cat
- ./datagen -g33M | $(LZ4) --no-frame-crc | $(LZ4) -t
- ./datagen -g256MB | $(LZ4) -vqB4D | $(LZ4) -t
- @echo "hello world" > tmp
-- $(LZ4) --rm -f tmp
-+ $(LZ4) --rm -f tmp tmp.lz4
- test ! -f tmp # must fail (--rm)
- test -f tmp.lz4
- $(PRGDIR)/lz4cat tmp.lz4 # must display hello world
- test -f tmp.lz4
-- $(PRGDIR)/unlz4 --rm tmp.lz4
-+ $(PRGDIR)/unlz4 --rm tmp.lz4 tmp
- test -f tmp
- test ! -f tmp.lz4 # must fail (--rm)
- test ! -f tmp.lz4.lz4 # must fail (unlz4)
- $(PRGDIR)/lz4cat tmp # pass-through mode
- test -f tmp
- test ! -f tmp.lz4 # must fail (lz4cat)
-- $(LZ4) tmp # creates tmp.lz4
-+ $(LZ4) tmp tmp.lz4 # creates tmp.lz4
- $(PRGDIR)/lz4cat < tmp.lz4 > tmp3 # checks lz4cat works with stdin (#285)
- $(DIFF) -q tmp tmp3
- $(PRGDIR)/lz4cat < tmp > tmp2 # checks lz4cat works with stdin (#285)
---
-2.12.2
-
diff --git a/gnu/packages/patches/newsbeuter-CVE-2017-12904.patch b/gnu/packages/patches/newsbeuter-CVE-2017-12904.patch
new file mode 100644
index 0000000000..8e90502469
--- /dev/null
+++ b/gnu/packages/patches/newsbeuter-CVE-2017-12904.patch
@@ -0,0 +1,34 @@
+Fix CVE-2017-12904:
+
+https://github.com/akrennmair/newsbeuter/issues/591
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=2017-12904
+
+Patch copied from the Debian package of newsbeuter, version 2.9-5+deb9u1.
+
+Adapted from upstream source repository:
+
+https://github.com/akrennmair/newsbeuter/commit/96e9506ae9e252c548665152d1b8968297128307
+
+Description: Fix a RCE vulnerability in the bookmark command
+ Newsbeuter didn't properly escape the title and description fields before
+ passing them to the bookmarking program which could lead to remote code
+ execution using the shells command substitution functionality (e.g. "$()", ``,
+ etc)
+
+Origin: upstream, https://github.com/akrennmair/newsbeuter/commit/96e9506ae9e252c548665152d1b8968297128307
+Last-Update: 2017-08-18
+
+--- newsbeuter-2.9.orig/src/controller.cpp
++++ newsbeuter-2.9/src/controller.cpp
+@@ -1274,9 +1274,10 @@ std::string controller::bookmark(const s
+ std::string bookmark_cmd = cfg.get_configvalue("bookmark-cmd");
+ bool is_interactive = cfg.get_configvalue_as_bool("bookmark-interactive");
+ if (bookmark_cmd.length() > 0) {
+- std::string cmdline = utils::strprintf("%s '%s' %s %s",
++ std::string cmdline = utils::strprintf("%s '%s' '%s' '%s'",
+ bookmark_cmd.c_str(), utils::replace_all(url,"'", "%27").c_str(),
+- stfl::quote(title).c_str(), stfl::quote(description).c_str());
++ utils::replace_all(title,"'", "%27").c_str(),
++ utils::replace_all(description,"'", "%27").c_str());
+
+ LOG(LOG_DEBUG, "controller::bookmark: cmd = %s", cmdline.c_str());
diff --git a/gnu/packages/patches/python-cython-fix-tests-32bit.patch b/gnu/packages/patches/python-cython-fix-tests-32bit.patch
deleted file mode 100644
index 7ccc11dd4c..0000000000
--- a/gnu/packages/patches/python-cython-fix-tests-32bit.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-This fixes a test failure on 32-bit platforms.
-
-Upstream bug URL: https://github.com/cython/cython/issues/1548
-
-Patch copied from upstream source repository:
-
-https://github.com/cython/cython/commit/d92a718a26c9354fbf35f31a17de5c069865a447
-
-From d92a718a26c9354fbf35f31a17de5c069865a447 Mon Sep 17 00:00:00 2001
-From: Robert Bradshaw <robertwb@gmail.com>
-Date: Tue, 24 Jan 2017 16:57:00 -0800
-Subject: [PATCH] Normalize possible L suffix.
-
----
- tests/run/cpdef_enums.pyx | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/tests/run/cpdef_enums.pyx b/tests/run/cpdef_enums.pyx
-index 167c762..c264ec5 100644
---- a/tests/run/cpdef_enums.pyx
-+++ b/tests/run/cpdef_enums.pyx
-@@ -93,4 +93,4 @@ def verify_resolution_GH1533():
- 3
- """
- THREE = 100
-- return PyxEnum.THREE
-+ return int(PyxEnum.THREE)
diff --git a/gnu/packages/patches/python-pygit2-disable-network-tests.patch b/gnu/packages/patches/python-pygit2-disable-network-tests.patch
index e46d244807..5578e4c375 100644
--- a/gnu/packages/patches/python-pygit2-disable-network-tests.patch
+++ b/gnu/packages/patches/python-pygit2-disable-network-tests.patch
@@ -1,64 +1,43 @@
Disable tests trying to look up remote servers.
diff --git a/test/test_credentials.py b/test/test_credentials.py
-index 92482d9..9a281e5 100644
--- a/test/test_credentials.py
+++ b/test/test_credentials.py
-@@ -68,39 +68,5 @@ class CredentialCreateTest(utils.NoRepoTestCase):
+@@ -68,6 +68,7 @@ class CredentialCreateTest(utils.NoRepoTestCase):
self.assertEqual((username, None, None, None), cred.credential_tuple)
--class CredentialCallback(utils.RepoTestCase):
-- def test_callback(self):
-- class MyCallbacks(pygit2.RemoteCallbacks):
-- @staticmethod
-- def credentials(url, username, allowed):
-- self.assertTrue(allowed & GIT_CREDTYPE_USERPASS_PLAINTEXT)
-- raise Exception("I don't know the password")
--
-- url = "https://github.com/github/github"
-- remote = self.repo.create_remote("github", url)
--
-- self.assertRaises(Exception, lambda: remote.fetch(callbacks=MyCallbacks()))
--
-- def test_bad_cred_type(self):
-- class MyCallbacks(pygit2.RemoteCallbacks):
-- @staticmethod
-- def credentials(url, username, allowed):
-- self.assertTrue(allowed & GIT_CREDTYPE_USERPASS_PLAINTEXT)
-- return Keypair("git", "foo.pub", "foo", "sekkrit")
--
-- url = "https://github.com/github/github"
-- remote = self.repo.create_remote("github", url)
-- self.assertRaises(TypeError, lambda: remote.fetch(callbacks=MyCallbacks()))
--
--class CallableCredentialTest(utils.RepoTestCase):
--
-- def test_user_pass(self):
-- credentials = UserPass("libgit2", "libgit2")
-- callbacks = pygit2.RemoteCallbacks(credentials=credentials)
--
-- url = "https://bitbucket.org/libgit2/testgitrepository.git"
-- remote = self.repo.create_remote("bb", url)
-- remote.fetch(callbacks=callbacks)
--
- if __name__ == '__main__':
- unittest.main()
++@unittest.skipIf(True, "network tests are not supported in Guix")
+ class CredentialCallback(utils.RepoTestCase):
+ def test_callback(self):
+ class MyCallbacks(pygit2.RemoteCallbacks):
+@@ -92,6 +93,7 @@ class CredentialCallback(utils.RepoTestCase):
+ remote = self.repo.create_remote("github", url)
+ self.assertRaises(TypeError, lambda: remote.fetch(callbacks=MyCallbacks()))
+
++@unittest.skipIf(True, "network tests are not supported in Guix")
+ class CallableCredentialTest(utils.RepoTestCase):
+
+ def test_user_pass(self):
diff --git a/test/test_repository.py b/test/test_repository.py
-index cfdf01e..c0d8de4 100644
--- a/test/test_repository.py
+++ b/test/test_repository.py
-@@ -538,13 +538,6 @@ class CloneRepositoryTest(utils.NoRepoTestCase):
+@@ -573,6 +573,7 @@ class CloneRepositoryTest(utils.NoRepoTestCase):
self.assertTrue('refs/remotes/custom_remote/master' in repo.listall_references())
self.assertIsNotNone(repo.remotes["custom_remote"])
-- def test_clone_with_credentials(self):
-- repo = clone_repository(
-- "https://bitbucket.org/libgit2/testgitrepository.git",
-- self._temp_dir, callbacks=pygit2.RemoteCallbacks(credentials=pygit2.UserPass("libgit2", "libgit2")))
--
-- self.assertFalse(repo.is_empty)
--
- def test_clone_with_checkout_branch(self):
- # create a test case which isolates the remote
- test_repo = clone_repository('./test/data/testrepo.git',
++ @unittest.skipIf(True, "network tests are not supported in Guix")
+ def test_clone_with_credentials(self):
+ repo = clone_repository(
+ "https://bitbucket.org/libgit2/testgitrepository.git",
+diff --git a/test/test_submodule.py b/test/test_submodule.py
+--- a/test/test_submodule.py
++++ b/test/test_submodule.py
+@@ -42,6 +42,7 @@ SUBM_PATH = 'submodule'
+ SUBM_URL = 'https://github.com/libgit2/pygit2'
+ SUBM_HEAD_SHA = '819cbff552e46ac4b8d10925cc422a30aa04e78e'
+
++@unittest.skipIf(True, "network tests are not supported in Guix")
+ class SubmoduleTest(utils.SubmoduleRepoTestCase):
+
+ def test_lookup_submodule(self):
diff --git a/gnu/packages/patches/rpm-CVE-2014-8118.patch b/gnu/packages/patches/rpm-CVE-2014-8118.patch
deleted file mode 100644
index 5fdb0f0eb2..0000000000
--- a/gnu/packages/patches/rpm-CVE-2014-8118.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-Fix CVE-2014-8118 (integer overflow allowing arbitrary remote code
-execution via crafted CPIO header).
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2014-8118
-
-Source:
-https://bugzilla.redhat.com/attachment.cgi?id=962159&action=diff
-
-Adopted by Debian:
-http://anonscm.debian.org/cgit/collab-maint/rpm.git/plain/debian/patches/CVE-2014-8118.patch
-
-diff --git a/lib/cpio.c b/lib/cpio.c
-index 253ff0f..600633a 100644
---- a/lib/cpio.c
-+++ b/lib/cpio.c
-@@ -399,6 +399,9 @@ int rpmcpioHeaderRead(rpmcpio_t cpio, char ** path, int * fx)
-
- GET_NUM_FIELD(hdr.filesize, fsize);
- GET_NUM_FIELD(hdr.namesize, nameSize);
-+ if (nameSize <= 0 || nameSize > 4096) {
-+ return RPMERR_BAD_HEADER;
-+ }
-
- char name[nameSize + 1];
- read = Fread(name, nameSize, 1, cpio->fd);
diff --git a/gnu/packages/patches/vinagre-revert-1.patch b/gnu/packages/patches/vinagre-revert-1.patch
new file mode 100644
index 0000000000..5a983770b7
--- /dev/null
+++ b/gnu/packages/patches/vinagre-revert-1.patch
@@ -0,0 +1,56 @@
+Patch taken from Debian: revert changes that prevent building against freerdp
+version 1.1 branch.
+
+From 8ebc0685b85e0d1f70eb00171f2e7712de3d44bd Mon Sep 17 00:00:00 2001
+From: Michael Biebl <biebl@debian.org>
+Date: Thu, 22 Sep 2016 01:15:55 +0200
+Subject: [PATCH 1/2] Revert "Improve FreeRDP authentication failure handling"
+
+This reverts commit d7b4f88943e8615d252d27e1efc58cb64a9e1821.
+---
+ plugins/rdp/vinagre-rdp-tab.c | 10 ++++++----
+ 1 file changed, 6 insertions(+), 4 deletions(-)
+
+diff --git a/plugins/rdp/vinagre-rdp-tab.c b/plugins/rdp/vinagre-rdp-tab.c
+index b731f9b..8572bc3 100644
+--- a/plugins/rdp/vinagre-rdp-tab.c
++++ b/plugins/rdp/vinagre-rdp-tab.c
+@@ -1195,8 +1195,8 @@ open_freerdp (VinagreRdpTab *rdp_tab)
+ VinagreTab *tab = VINAGRE_TAB (rdp_tab);
+ GtkWindow *window = GTK_WINDOW (vinagre_tab_get_window (tab));
+ gboolean success = TRUE;
++ gboolean authentication_error = FALSE;
+ gboolean cancelled = FALSE;
+- guint authentication_errors = 0;
+
+ priv->events = g_queue_new ();
+
+@@ -1205,12 +1205,14 @@ open_freerdp (VinagreRdpTab *rdp_tab)
+
+ do
+ {
++ authentication_error = FALSE;
++
+ /* Run FreeRDP session */
+ success = freerdp_connect (priv->freerdp_session);
+ if (!success)
+ {
+- authentication_errors += freerdp_get_last_error (priv->freerdp_session->context) == 0x20009 ||
+- freerdp_get_last_error (priv->freerdp_session->context) == 0x2000c;
++ authentication_error = freerdp_get_last_error (priv->freerdp_session->context) == 0x20009 ||
++ freerdp_get_last_error (priv->freerdp_session->context) == 0x2000c;
+
+ cancelled = freerdp_get_last_error (priv->freerdp_session->context) == 0x2000b;
+
+@@ -1218,7 +1220,7 @@ open_freerdp (VinagreRdpTab *rdp_tab)
+ init_freerdp (rdp_tab);
+ }
+ }
+- while (!success && authentication_errors < 3);
++ while (!success && authentication_error);
+
+ if (!success)
+ {
+--
+2.9.3
+
diff --git a/gnu/packages/patches/vinagre-revert-2.patch b/gnu/packages/patches/vinagre-revert-2.patch
new file mode 100644
index 0000000000..686ee203e4
--- /dev/null
+++ b/gnu/packages/patches/vinagre-revert-2.patch
@@ -0,0 +1,448 @@
+Patch taken from Debian: revert changes that prevent building against freerdp
+version 1.1 branch.
+
+From bb1828b6b7eb29bb037bcc687cf10f916ddc7561 Mon Sep 17 00:00:00 2001
+From: Michael Biebl <biebl@debian.org>
+Date: Thu, 22 Sep 2016 01:18:16 +0200
+Subject: [PATCH 2/2] Revert "Store credentials for RDP"
+
+This reverts commit 60dea279a24c7f0e398b89a0a60d45e80087ed1d.
+---
+ plugins/rdp/vinagre-rdp-connection.c | 22 +---
+ plugins/rdp/vinagre-rdp-plugin.c | 29 +----
+ plugins/rdp/vinagre-rdp-tab.c | 231 +++++++++++++++++------------------
+ 3 files changed, 123 insertions(+), 159 deletions(-)
+
+diff --git a/plugins/rdp/vinagre-rdp-connection.c b/plugins/rdp/vinagre-rdp-connection.c
+index f0ff02b..c5f6ed1 100644
+--- a/plugins/rdp/vinagre-rdp-connection.c
++++ b/plugins/rdp/vinagre-rdp-connection.c
+@@ -127,25 +127,9 @@ rdp_parse_item (VinagreConnection *conn, xmlNode *root)
+ static void
+ rdp_parse_options_widget (VinagreConnection *conn, GtkWidget *widget)
+ {
+- const gchar *text;
+- GtkWidget *u_entry, *d_entry, *spin_button, *scaling_button;
+- gboolean scaling;
+- guint width, height;
+-
+- d_entry = g_object_get_data (G_OBJECT (widget), "domain_entry");
+- if (!d_entry)
+- {
+- g_warning ("Wrong widget passed to rdp_parse_options_widget()");
+- return;
+- }
+-
+- text = gtk_entry_get_text (GTK_ENTRY (d_entry));
+- vinagre_cache_prefs_set_string ("rdp-connection", "domain", text);
+-
+- g_object_set (conn,
+- "domain", text != NULL && *text != '\0' ? text : NULL,
+- NULL);
+-
++ GtkWidget *u_entry, *spin_button, *scaling_button;
++ gboolean scaling;
++ guint width, height;
+
+ u_entry = g_object_get_data (G_OBJECT (widget), "username_entry");
+ if (!u_entry)
+diff --git a/plugins/rdp/vinagre-rdp-plugin.c b/plugins/rdp/vinagre-rdp-plugin.c
+index 4751102..f41da37 100644
+--- a/plugins/rdp/vinagre-rdp-plugin.c
++++ b/plugins/rdp/vinagre-rdp-plugin.c
+@@ -100,7 +100,7 @@ vinagre_rdp_plugin_init (VinagreRdpPlugin *plugin)
+ static GtkWidget *
+ impl_get_connect_widget (VinagreProtocol *plugin, VinagreConnection *conn)
+ {
+- GtkWidget *grid, *label, *u_entry, *d_entry, *spin_button, *check;
++ GtkWidget *grid, *label, *u_entry, *spin_button, *check;
+ gchar *str;
+ gint width, height;
+
+@@ -146,29 +146,10 @@ impl_get_connect_widget (VinagreProtocol *plugin, VinagreConnection *conn)
+ g_free (str);
+
+
+- label = gtk_label_new_with_mnemonic (_("_Domain:"));
+- gtk_misc_set_alignment (GTK_MISC (label), 0.0, 0.5);
+- gtk_grid_attach (GTK_GRID (grid), label, 0, 3, 1, 1);
+- gtk_widget_set_margin_left (label, 12);
+-
+- d_entry = gtk_entry_new ();
+- /* Translators: This is the tooltip for the domain field in a RDP connection */
+- gtk_widget_set_tooltip_text (d_entry, _("Optional."));
+- g_object_set_data (G_OBJECT (grid), "domain_entry", d_entry);
+- gtk_grid_attach (GTK_GRID (grid), d_entry, 1, 3, 1, 1);
+- gtk_label_set_mnemonic_widget (GTK_LABEL (label), d_entry);
+- str = g_strdup (VINAGRE_IS_CONNECTION (conn) ?
+- vinagre_connection_get_domain (conn) :
+- vinagre_cache_prefs_get_string ("rdp-connection", "domain", ""));
+- gtk_entry_set_text (GTK_ENTRY (d_entry), str);
+- gtk_entry_set_activates_default (GTK_ENTRY (d_entry), TRUE);
+- g_free (str);
+-
+-
+ /* Host width */
+ label = gtk_label_new_with_mnemonic (_("_Width:"));
+ gtk_misc_set_alignment (GTK_MISC (label), 0.0, 0.5);
+- gtk_grid_attach (GTK_GRID (grid), label, 0, 4, 1, 1);
++ gtk_grid_attach (GTK_GRID (grid), label, 0, 3, 1, 1);
+ gtk_widget_set_margin_left (label, 12);
+
+ spin_button = gtk_spin_button_new_with_range (MIN_SIZE, MAX_SIZE, 1);
+@@ -176,7 +157,7 @@ impl_get_connect_widget (VinagreProtocol *plugin, VinagreConnection *conn)
+ gtk_widget_set_tooltip_text (spin_button, _("Set width of the remote desktop"));
+ gtk_spin_button_set_value (GTK_SPIN_BUTTON (spin_button), DEFAULT_WIDTH);
+ g_object_set_data (G_OBJECT (grid), "width_spin_button", spin_button);
+- gtk_grid_attach (GTK_GRID (grid), spin_button, 1, 4, 1, 1);
++ gtk_grid_attach (GTK_GRID (grid), spin_button, 1, 3, 1, 1);
+ gtk_label_set_mnemonic_widget (GTK_LABEL (label), spin_button);
+ width = VINAGRE_IS_CONNECTION (conn) ?
+ vinagre_connection_get_width (conn) :
+@@ -188,7 +169,7 @@ impl_get_connect_widget (VinagreProtocol *plugin, VinagreConnection *conn)
+ /* Host height */
+ label = gtk_label_new_with_mnemonic (_("_Height:"));
+ gtk_misc_set_alignment (GTK_MISC (label), 0.0, 0.5);
+- gtk_grid_attach (GTK_GRID (grid), label, 0, 5, 1, 1);
++ gtk_grid_attach (GTK_GRID (grid), label, 0, 4, 1, 1);
+ gtk_widget_set_margin_left (label, 12);
+
+ spin_button = gtk_spin_button_new_with_range (MIN_SIZE, MAX_SIZE, 1);
+@@ -196,7 +177,7 @@ impl_get_connect_widget (VinagreProtocol *plugin, VinagreConnection *conn)
+ gtk_widget_set_tooltip_text (spin_button, _("Set height of the remote desktop"));
+ gtk_spin_button_set_value (GTK_SPIN_BUTTON (spin_button), DEFAULT_HEIGHT);
+ g_object_set_data (G_OBJECT (grid), "height_spin_button", spin_button);
+- gtk_grid_attach (GTK_GRID (grid), spin_button, 1, 5, 1, 1);
++ gtk_grid_attach (GTK_GRID (grid), spin_button, 1, 4, 1, 1);
+ gtk_label_set_mnemonic_widget (GTK_LABEL (label), spin_button);
+ height = VINAGRE_IS_CONNECTION (conn) ?
+ vinagre_connection_get_height (conn) :
+diff --git a/plugins/rdp/vinagre-rdp-tab.c b/plugins/rdp/vinagre-rdp-tab.c
+index 8572bc3..f3d9c08 100644
+--- a/plugins/rdp/vinagre-rdp-tab.c
++++ b/plugins/rdp/vinagre-rdp-tab.c
+@@ -70,8 +70,6 @@ struct _VinagreRdpTabPrivate
+ gboolean scaling;
+ double scale;
+ double offset_x, offset_y;
+-
+- guint authentication_attempts;
+ };
+
+ G_DEFINE_TYPE (VinagreRdpTab, vinagre_rdp_tab, VINAGRE_TYPE_TAB)
+@@ -611,7 +609,6 @@ frdp_post_connect (freerdp *instance)
+ 0, 0,
+ gdi->width, gdi->height);
+
+- vinagre_tab_save_credentials_in_keyring (VINAGRE_TAB (rdp_tab));
+ vinagre_tab_add_recent_used (VINAGRE_TAB (rdp_tab));
+ vinagre_tab_set_state (VINAGRE_TAB (rdp_tab), VINAGRE_TAB_STATE_CONNECTED);
+
+@@ -862,76 +859,114 @@ frdp_mouse_moved (GtkWidget *widget,
+ return TRUE;
+ }
+
++static void
++entry_text_changed_cb (GtkEntry *entry,
++ GtkBuilder *builder)
++{
++ const gchar *text;
++ GtkWidget *widget;
++ gsize username_length;
++ gsize password_length;
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "username_entry"));
++ text = gtk_entry_get_text (GTK_ENTRY (widget));
++ username_length = strlen (text);
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "password_entry"));
++ text = gtk_entry_get_text (GTK_ENTRY (widget));
++ password_length = strlen (text);
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "ok_button"));
++ gtk_widget_set_sensitive (widget, password_length > 0 && username_length > 0);
++}
++
+ static gboolean
+ frdp_authenticate (freerdp *instance,
+ char **username,
+ char **password,
+ char **domain)
+ {
+- VinagreTab *tab = VINAGRE_TAB (((frdpContext *) instance->context)->rdp_tab);
+- VinagreRdpTab *rdp_tab = VINAGRE_RDP_TAB (tab);
+- VinagreRdpTabPrivate *priv = rdp_tab->priv;
+- VinagreConnection *conn = vinagre_tab_get_conn (tab);
+- GtkWindow *window = GTK_WINDOW (vinagre_tab_get_window (tab));
+- gboolean save_in_keyring = FALSE;
+- gchar *keyring_domain = NULL;
+- gchar *keyring_username = NULL;
+- gchar *keyring_password = NULL;
++ VinagreTab *tab = VINAGRE_TAB (((frdpContext *) instance->context)->rdp_tab);
++ VinagreConnection *conn = vinagre_tab_get_conn (tab);
++ const gchar *user_name;
++ const gchar *domain_name;
++ GtkBuilder *builder;
++ GtkWidget *dialog;
++ GtkWidget *widget;
++ GtkWidget *username_entry;
++ GtkWidget *password_entry;
++ GtkWidget *domain_entry;
++ gboolean save_credential_check_visible;
++ gboolean domain_label_visible;
++ gboolean domain_entry_visible;
++ gint response;
+
+- priv->authentication_attempts++;
++ builder = vinagre_utils_get_builder ();
+
+- if (priv->authentication_attempts == 1)
+- {
+- vinagre_tab_find_credentials_in_keyring (tab, &keyring_domain, &keyring_username, &keyring_password);
+- if (keyring_password != NULL && keyring_username != NULL)
+- {
+- *domain = keyring_domain;
+- *username = keyring_username;
+- *password = keyring_password;
++ dialog = GTK_WIDGET (gtk_builder_get_object (builder, "auth_required_dialog"));
++ gtk_window_set_modal ((GtkWindow *) dialog, TRUE);
++ gtk_window_set_transient_for ((GtkWindow *) dialog, GTK_WINDOW (vinagre_tab_get_window (tab)));
+
+- return TRUE;
+- }
+- else
+- {
+- g_free (keyring_domain);
+- g_free (keyring_username);
+- g_free (keyring_password);
+- }
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "host_label"));
++ gtk_label_set_text (GTK_LABEL (widget), vinagre_connection_get_host (conn));
++
++ username_entry = GTK_WIDGET (gtk_builder_get_object (builder, "username_entry"));
++ password_entry = GTK_WIDGET (gtk_builder_get_object (builder, "password_entry"));
++ domain_entry = GTK_WIDGET (gtk_builder_get_object (builder, "domain_entry"));
++
++ if (*username != NULL && *username[0] != '\0')
++ {
++ gtk_entry_set_text (GTK_ENTRY (username_entry), *username);
++ gtk_widget_grab_focus (password_entry);
+ }
+
+- if (vinagre_utils_request_credential (window,
+- "RDP",
+- vinagre_connection_get_host (conn),
+- vinagre_connection_get_domain (conn),
+- vinagre_connection_get_username (conn),
+- TRUE,
+- TRUE,
+- TRUE,
+- 20,
+- domain,
+- username,
+- password,
+- &save_in_keyring))
++ g_signal_connect (username_entry, "changed", G_CALLBACK (entry_text_changed_cb), builder);
++ g_signal_connect (password_entry, "changed", G_CALLBACK (entry_text_changed_cb), builder);
++
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "save_credential_check"));
++ save_credential_check_visible = gtk_widget_get_visible (widget);
++ gtk_widget_set_visible (widget, FALSE);
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "domain_label"));
++ domain_label_visible = gtk_widget_get_visible (widget);
++ gtk_widget_set_visible (widget, TRUE);
++
++ domain_entry_visible = gtk_widget_get_visible (domain_entry);
++ gtk_widget_set_visible (domain_entry, TRUE);
++
++
++ response = gtk_dialog_run (GTK_DIALOG (dialog));
++ gtk_widget_hide (dialog);
++
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "save_credential_check"));
++ gtk_widget_set_visible (widget, save_credential_check_visible);
++
++ widget = GTK_WIDGET (gtk_builder_get_object (builder, "domain_label"));
++ gtk_widget_set_visible (widget, domain_label_visible);
++
++ gtk_widget_set_visible (domain_entry, domain_entry_visible);
++
++
++ if (response == GTK_RESPONSE_OK)
+ {
+- if (*domain && **domain != '\0')
+- vinagre_connection_set_domain (conn, *domain);
++ domain_name = gtk_entry_get_text (GTK_ENTRY (domain_entry));
++ if (g_strcmp0 (*domain, domain_name) != 0)
++ *domain = g_strdup (domain_name);
+
+- if (*username && **username != '\0')
+- vinagre_connection_set_username (conn, *username);
++ user_name = gtk_entry_get_text (GTK_ENTRY (username_entry));
++ if (g_strcmp0 (*username, user_name) != 0)
++ *username = g_strdup (user_name);
+
+- if (*password && **password != '\0')
+- vinagre_connection_set_password (conn, *password);
++ *password = g_strdup (gtk_entry_get_text (GTK_ENTRY (password_entry)));
+
+- vinagre_tab_set_save_credentials (tab, save_in_keyring);
++ return TRUE;
+ }
+ else
+ {
+- vinagre_tab_remove_from_notebook (tab);
+-
+ return FALSE;
+ }
+-
+- return TRUE;
+ }
+
+ static BOOL
+@@ -1028,25 +1063,30 @@ frdp_changed_certificate_verify (freerdp *instance,
+ #endif
+
+ static void
+-init_freerdp (VinagreRdpTab *rdp_tab)
++open_freerdp (VinagreRdpTab *rdp_tab)
+ {
+ VinagreRdpTabPrivate *priv = rdp_tab->priv;
+- rdpSettings *settings;
+ VinagreTab *tab = VINAGRE_TAB (rdp_tab);
+ VinagreConnection *conn = vinagre_tab_get_conn (tab);
+- gboolean scaling;
+- gchar *hostname;
+- gint width, height;
+- gint port;
++ rdpSettings *settings;
++ GtkWindow *window = GTK_WINDOW (vinagre_tab_get_window (tab));
++ gboolean success = TRUE;
++ gboolean fullscreen, scaling;
++ gchar *hostname, *username;
++ gint port, width, height;
+
+ g_object_get (conn,
+ "port", &port,
+ "host", &hostname,
+ "width", &width,
+ "height", &height,
++ "fullscreen", &fullscreen,
+ "scaling", &scaling,
++ "username", &username,
+ NULL);
+
++ priv->events = g_queue_new ();
++
+ /* Setup FreeRDP session */
+ priv->freerdp_session = freerdp_new ();
+ priv->freerdp_session->PreConnect = frdp_pre_connect;
+@@ -1111,6 +1151,17 @@ init_freerdp (VinagreRdpTab *rdp_tab)
+ settings->port = port;
+ #endif
+
++ /* Set username */
++ username = g_strstrip (username);
++ if (username != NULL && username[0] != '\0')
++ {
++#if HAVE_FREERDP_1_1
++ settings->Username = g_strdup (username);
++#else
++ settings->username = g_strdup (username);
++#endif
++ }
++
+ /* Set keyboard layout */
+ #if HAVE_FREERDP_1_1
+ freerdp_keyboard_init (KBD_US);
+@@ -1120,24 +1171,6 @@ init_freerdp (VinagreRdpTab *rdp_tab)
+
+ /* Allow font smoothing by default */
+ settings->AllowFontSmoothing = TRUE;
+-}
+-
+-static void
+-init_display (VinagreRdpTab *rdp_tab)
+-{
+- VinagreRdpTabPrivate *priv = rdp_tab->priv;
+- VinagreTab *tab = VINAGRE_TAB (rdp_tab);
+- VinagreConnection *conn = vinagre_tab_get_conn (tab);
+- GtkWindow *window = GTK_WINDOW (vinagre_tab_get_window (tab));
+- gboolean fullscreen, scaling;
+- gint width, height;
+-
+- g_object_get (conn,
+- "width", &width,
+- "height", &height,
+- "fullscreen", &fullscreen,
+- "scaling", &scaling,
+- NULL);
+
+ /* Setup display for FreeRDP session */
+ priv->display = gtk_drawing_area_new ();
+@@ -1186,54 +1219,20 @@ init_display (VinagreRdpTab *rdp_tab)
+ priv->key_release_handler_id = g_signal_connect (GTK_WIDGET (tab), "key-release-event",
+ G_CALLBACK (frdp_key_pressed),
+ rdp_tab);
+-}
+-
+-static void
+-open_freerdp (VinagreRdpTab *rdp_tab)
+-{
+- VinagreRdpTabPrivate *priv = rdp_tab->priv;
+- VinagreTab *tab = VINAGRE_TAB (rdp_tab);
+- GtkWindow *window = GTK_WINDOW (vinagre_tab_get_window (tab));
+- gboolean success = TRUE;
+- gboolean authentication_error = FALSE;
+- gboolean cancelled = FALSE;
+-
+- priv->events = g_queue_new ();
+-
+- init_freerdp (rdp_tab);
+- init_display (rdp_tab);
+-
+- do
+- {
+- authentication_error = FALSE;
+
+- /* Run FreeRDP session */
+- success = freerdp_connect (priv->freerdp_session);
+- if (!success)
+- {
+- authentication_error = freerdp_get_last_error (priv->freerdp_session->context) == 0x20009 ||
+- freerdp_get_last_error (priv->freerdp_session->context) == 0x2000c;
+-
+- cancelled = freerdp_get_last_error (priv->freerdp_session->context) == 0x2000b;
+-
+- freerdp_free (priv->freerdp_session);
+- init_freerdp (rdp_tab);
+- }
+- }
+- while (!success && authentication_error);
++ /* Run FreeRDP session */
++ success = freerdp_connect (priv->freerdp_session);
+
+ if (!success)
+ {
+ gtk_window_unfullscreen (window);
+- if (!cancelled)
+- vinagre_utils_show_error_dialog (_("Error connecting to host."),
+- NULL,
+- window);
++ vinagre_utils_show_error_dialog (_("Error connecting to host."),
++ NULL,
++ window);
+ g_idle_add ((GSourceFunc) idle_close, rdp_tab);
+ }
+ else
+ {
+- priv->authentication_attempts = 0;
+ priv->update_id = g_idle_add ((GSourceFunc) update, rdp_tab);
+ }
+ }
+--
+2.9.3
+
diff --git a/gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch b/gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch
new file mode 100644
index 0000000000..8aeec455d7
--- /dev/null
+++ b/gnu/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch
@@ -0,0 +1,171 @@
+From eee8fd4c489a693344da0bba14cfa54c54610b89 Mon Sep 17 00:00:00 2001
+From: Maarten Lankhorst <maarten.lankhorst@ubuntu.com>
+Date: Thu, 9 Mar 2017 13:31:34 +0200
+Subject: [PATCH] Fix build against xorg server 1.17 on certain architectures
+
+Fixes at least arm64, likely also hppa, m68k, sh4.
+
+Signed-off-by: Maarten Lankhorst <maarten.lankhorst@ubuntu.com>
+---
+ src/regsmi.h | 18 ++++++++++++++++++
+ src/smi.h | 2 ++
+ src/smi_driver.c | 19 +++++++++----------
+ src/smilynx_crtc.c | 6 +++---
+ src/smilynx_hw.c | 5 ++---
+ 5 files changed, 34 insertions(+), 16 deletions(-)
+
+diff --git a/src/regsmi.h b/src/regsmi.h
+index 5dd0320..69205ba 100644
+--- a/src/regsmi.h
++++ b/src/regsmi.h
+@@ -64,8 +64,13 @@ VGAIN8_INDEX(SMIPtr pSmi, int indexPort, int dataPort, CARD8 index)
+ MMIO_OUT8(pSmi->IOBase, indexPort, index);
+ return(MMIO_IN8(pSmi->IOBase, dataPort));
+ } else {
++#ifdef XSERVER_LIBPCIACCESS
++ pci_io_write8(pSmi->io, indexPort, index);
++ return pci_io_read8(pSmi->io, dataPort);
++#else
+ outb(pSmi->PIOBase + indexPort, index);
+ return(inb(pSmi->PIOBase + dataPort));
++#endif
+ }
+ }
+
+@@ -76,8 +81,13 @@ VGAOUT8_INDEX(SMIPtr pSmi, int indexPort, int dataPort, CARD8 index, CARD8 data)
+ MMIO_OUT8(pSmi->IOBase, indexPort, index);
+ MMIO_OUT8(pSmi->IOBase, dataPort, data);
+ } else {
++#ifdef XSERVER_LIBPCIACCESS
++ pci_io_write8(pSmi->io, indexPort, index);
++ pci_io_write8(pSmi->io, dataPort, data);
++#else
+ outb(pSmi->PIOBase + indexPort, index);
+ outb(pSmi->PIOBase + dataPort, data);
++#endif
+ }
+ }
+
+@@ -87,7 +97,11 @@ VGAIN8(SMIPtr pSmi, int port)
+ if (pSmi->IOBase) {
+ return(MMIO_IN8(pSmi->IOBase, port));
+ } else {
++#ifdef XSERVER_LIBPCIACCESS
++ return pci_io_read8(pSmi->io, port);
++#else
+ return(inb(pSmi->PIOBase + port));
++#endif
+ }
+ }
+
+@@ -97,7 +111,11 @@ VGAOUT8(SMIPtr pSmi, int port, CARD8 data)
+ if (pSmi->IOBase) {
+ MMIO_OUT8(pSmi->IOBase, port, data);
+ } else {
++#ifdef XSERVER_LIBPCIACCESS
++ pci_io_write8(pSmi->io, port, data);
++#else
+ outb(pSmi->PIOBase + port, data);
++#endif
+ }
+ }
+
+diff --git a/src/smi.h b/src/smi.h
+index 2742c8d..1f20a2d 100644
+--- a/src/smi.h
++++ b/src/smi.h
+@@ -171,6 +171,8 @@ typedef struct
+ pciVideoPtr PciInfo; /* PCI info vars */
+ #ifndef XSERVER_LIBPCIACCESS
+ PCITAG PciTag;
++#else
++ struct pci_io_handle *io;
+ #endif
+ int Chipset; /* Chip info, set using PCI
+ above */
+diff --git a/src/smi_driver.c b/src/smi_driver.c
+index 8949cae..6bdf64d 100644
+--- a/src/smi_driver.c
++++ b/src/smi_driver.c
+@@ -446,6 +446,9 @@ SMI_PreInit(ScrnInfoPtr pScrn, int flags)
+ pSmi->PIOBase = hwp->PIOOffset;
+ #else
+ pSmi->PIOBase = 0;
++#ifdef XSERVER_LIBPCIACCESS
++ pSmi->io = hwp->io;
++#endif
+ #endif
+
+ xf86ErrorFVerb(VERBLEV, "\tSMI_PreInit vgaCRIndex=%x, vgaIOBase=%x, "
+@@ -2022,16 +2025,14 @@ SMI_EnableMmio(ScrnInfoPtr pScrn)
+ vgaHWSetStdFuncs(hwp);
+
+ /* Enable linear mode */
+- outb(pSmi->PIOBase + VGA_SEQ_INDEX, 0x18);
+- tmp = inb(pSmi->PIOBase + VGA_SEQ_DATA);
++ tmp = VGAIN8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x18);
+ pSmi->SR18Value = tmp; /* PDR#521 */
+- outb(pSmi->PIOBase + VGA_SEQ_DATA, tmp | 0x11);
++ VGAOUT8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x18, tmp | 0x11);
+
+ /* Enable 2D/3D Engine and Video Processor */
+- outb(pSmi->PIOBase + VGA_SEQ_INDEX, 0x21);
+- tmp = inb(pSmi->PIOBase + VGA_SEQ_DATA);
++ tmp = VGAIN8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x21);
+ pSmi->SR21Value = tmp; /* PDR#521 */
+- outb(pSmi->PIOBase + VGA_SEQ_DATA, tmp & ~0x03);
++ VGAOUT8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x21, tmp & ~0x03);
+ }
+
+ LEAVE();
+@@ -2050,12 +2051,10 @@ SMI_DisableMmio(ScrnInfoPtr pScrn)
+ vgaHWSetStdFuncs(hwp);
+
+ /* Disable 2D/3D Engine and Video Processor */
+- outb(pSmi->PIOBase + VGA_SEQ_INDEX, 0x21);
+- outb(pSmi->PIOBase + VGA_SEQ_DATA, pSmi->SR21Value); /* PDR#521 */
++ VGAOUT8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x21, pSmi->SR21Value); /* PDR#521 */
+
+ /* Disable linear mode */
+- outb(pSmi->PIOBase + VGA_SEQ_INDEX, 0x18);
+- outb(pSmi->PIOBase + VGA_SEQ_DATA, pSmi->SR18Value); /* PDR#521 */
++ VGAOUT8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x18, pSmi->SR18Value); /* PDR#521 */
+ }
+
+ LEAVE();
+diff --git a/src/smilynx_crtc.c b/src/smilynx_crtc.c
+index fb7183c..f4d8b4e 100644
+--- a/src/smilynx_crtc.c
++++ b/src/smilynx_crtc.c
+@@ -619,9 +619,9 @@ SMILynx_CrtcModeSet_bios(xf86CrtcPtr crtc,
+ xf86ExecX86int10(pSmi->pInt10);
+
+ /* Enable linear mode. */
+- outb(pSmi->PIOBase + VGA_SEQ_INDEX, 0x18);
+- tmp = inb(pSmi->PIOBase + VGA_SEQ_DATA);
+- outb(pSmi->PIOBase + VGA_SEQ_DATA, tmp | 0x01);
++ VGAOUT8(pSmi, VGA_SEQ_INDEX, 0x18);
++ tmp = VGAIN8(pSmi, VGA_SEQ_DATA);
++ VGAOUT8(pSmi, VGA_SEQ_DATA, tmp | 0x01);
+
+ /* Enable DPR/VPR registers. */
+ tmp = VGAIN8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x21);
+diff --git a/src/smilynx_hw.c b/src/smilynx_hw.c
+index b2ee8a5..40aa5a4 100644
+--- a/src/smilynx_hw.c
++++ b/src/smilynx_hw.c
+@@ -365,9 +365,8 @@ SMILynx_WriteMode(ScrnInfoPtr pScrn, vgaRegPtr vgaSavePtr, SMIRegPtr restore)
+ xf86ExecX86int10(pSmi->pInt10);
+
+ /* Enable linear mode. */
+- outb(pSmi->PIOBase + VGA_SEQ_INDEX, 0x18);
+- tmp = inb(pSmi->PIOBase + VGA_SEQ_DATA);
+- outb(pSmi->PIOBase + VGA_SEQ_DATA, tmp | 0x01);
++ tmp = VGAIN8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x18);
++ VGAOUT8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x18, tmp | 0x01);
+
+ /* Enable DPR/VPR registers. */
+ tmp = VGAIN8_INDEX(pSmi, VGA_SEQ_INDEX, VGA_SEQ_DATA, 0x21);
+--
+2.7.4
+
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 5557b6042b..102b69cae6 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -3611,15 +3611,14 @@ is designed to have a low barrier to entry.")
(define-public python-cython
(package
(name "python-cython")
- (version "0.25.2")
+ (version "0.26")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Cython" version))
- (patches (search-patches "python-cython-fix-tests-32bit.patch"))
(sha256
(base32
- "01h3lrf6d98j07iakifi81qjszh6faa37ibx7ylva1vsqbwx2hgi"))))
+ "0riciynnr0r68cvg6r3gbhi9x7h44pdwb7926m6n5vfs5p1f492c"))))
(build-system python-build-system)
;; we need the full python package and not just the python-wrapper
;; because we need libpython3.3m.so
@@ -3630,7 +3629,7 @@ is designed to have a low barrier to entry.")
(modify-phases %standard-phases
(add-before 'check 'set-HOME
;; some tests require access to "$HOME/.cython"
- (lambda _ (setenv "HOME" "/tmp")))
+ (lambda _ (setenv "HOME" "/tmp") #t))
(replace 'check
(lambda _ (zero? (system* "python" "runtests.py" "-vv")))))))
(home-page "http://cython.org/")
@@ -3915,14 +3914,14 @@ association studies (GWAS) on extremely large data sets.")
(define-public python-pygit2
(package
(name "python-pygit2")
- (version "0.25.0")
+ (version "0.26.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pygit2" version))
(sha256
(base32
- "0wf5rp0fvrw7j3j18dvwjq6xqlbm611wd55aphrfpps0v1gxh3ny"))
+ "1cbc488ra3kg7r3qky17ms0szi3cda2d96qfkv1l9djsy9hnvw57"))
(patches
(search-patches "python-pygit2-disable-network-tests.patch"))))
(build-system python-build-system)
@@ -7296,7 +7295,7 @@ reading and writing MessagePack data.")
(define-public python-netaddr
(package
(name "python-netaddr")
- (version "0.7.18")
+ (version "0.7.19")
(source
(origin
(method url-fetch)
@@ -7306,7 +7305,7 @@ reading and writing MessagePack data.")
".tar.gz"))
(sha256
(base32
- "06dxjlbcicq7q3vqy8agq11ra01kvvd47j4mk6dmghjsyzyckxd1"))))
+ "1zdfadvpq4lmcqzr383gywxn4xyn355kj1n3lk9q2l03vmyfrbiq"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ;; No tests.
(home-page "https://github.com/drkjam/netaddr/")
@@ -7691,14 +7690,14 @@ responses, rather than doing any computation.")
(define-public python-cryptography-vectors
(package
(name "python-cryptography-vectors")
- (version "2.0.2")
+ (version "2.0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cryptography_vectors" version))
(sha256
(base32
- "0yvi2cp23rg20bq3hd47ixbvjh0zgxnxrriqx5v17d7vkmliwbsi"))))
+ "1qa117fs1yd50zn2cfxh7d9l999ds0z4h83m9m7j4fk6ffm33f5y"))))
(build-system python-build-system)
(home-page "https://github.com/pyca/cryptography")
(synopsis "Test vectors for the cryptography package")
@@ -7713,14 +7712,14 @@ responses, rather than doing any computation.")
(define-public python-cryptography
(package
(name "python-cryptography")
- (version "2.0.2")
+ (version "2.0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cryptography" version))
(sha256
(base32
- "1aq6ilnf2zdqshwqai4w8gmb5y6p7ip34qrjp1yb7sz77rkb501p"))))
+ "0fnck37zyvbzmccbp7w3jy27jgmij1992j5wyy3gxhw6a11b4jyh"))))
(build-system python-build-system)
(inputs
`(("openssl" ,openssl)))
diff --git a/gnu/packages/rdesktop.scm b/gnu/packages/rdesktop.scm
index 7946cde790..65d17de637 100644
--- a/gnu/packages/rdesktop.scm
+++ b/gnu/packages/rdesktop.scm
@@ -26,7 +26,9 @@
#:use-module (guix build-system gnu)
#:use-module (gnu packages compression)
#:use-module (gnu packages cups)
+ #:use-module (gnu packages docbook)
#:use-module (gnu packages gstreamer)
+ #:use-module (gnu packages image)
#:use-module (gnu packages linux)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pulseaudio)
@@ -70,51 +72,65 @@ to remotely control a user's Windows desktop.")
(license license:gpl3+)))
(define-public freerdp
- (package
- (name "freerdp")
- (version "2.0.0-rc0")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/FreeRDP/FreeRDP/archive/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0r36zwhl7fhmdng5pvl2a106gqbcqq184g2i2klz6ilna8pxjcml"))))
- (build-system cmake-build-system)
- (native-inputs
- `(("pkg-config" ,pkg-config)
- ("xmlto" ,xmlto)))
- (inputs
- `(("libx11" ,libx11)
- ("libxkbfile" ,libxkbfile)
- ("libxcursor" ,libxcursor)
- ("libxext" ,libxext)
- ("libxi" ,libxi)
- ("libxv" ,libxv)
- ("libxrandr" ,libxrandr)
- ("libxrender" ,libxrender)
- ("libxinerama" ,libxinerama)
- ("libxshmfence" ,libxshmfence)
- ("libxml2" ,libxml2)
- ("libxslt" ,libxslt)
- ("cups" ,cups)
- ("ffmpeg" ,ffmpeg)
- ("pulseaudio" ,pulseaudio)
- ("alsa-lib" ,alsa-lib)
- ("gstreamer" ,gstreamer)
- ("gst-plugins-base" ,gst-plugins-base)
- ("zlib" ,zlib)
- ("openssl" ,openssl)))
- (arguments
- `(#:configure-flags
- '("-DCMAKE_INSTALL_LIBDIR=lib"
- "-DWITH_PULSE=ON"
- "-DWITH_CUPS=ON")
- #:tests? #f)) ; no 'test' target
- (home-page "https://www.freerdp.com")
- (synopsis "Remote Desktop Protocol implementation")
- (description "FreeRDP implements Microsoft's Remote Desktop Protocol. It
-consists of the @code{xfreerdp} client, libraries for client and server
+ (let ((commit "03ab68318966c3a22935a02838daaea7b7fbe96c"))
+ (package
+ (name "freerdp")
+ (version (git-version "1.1" "1" commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ ;; We need the 1.1 branch for RDP support in vinagre.
+ (url "git://github.com/FreeRDP/FreeRDP.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "07ish8rmvbk2zd99k91qybmmh5h4afly75l5kbvslhq1r6k8pbmp"))))
+ (build-system cmake-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)
+ ("libxslt" ,libxslt)
+ ("libxml2" ,libxml2)
+ ("docbook-xsl" ,docbook-xsl)
+ ("xmlto" ,xmlto)))
+ (inputs
+ `(("libx11" ,libx11)
+ ("libxkbfile" ,libxkbfile)
+ ("libxcursor" ,libxcursor)
+ ("libxext" ,libxext)
+ ("libxi" ,libxi)
+ ("libxv" ,libxv)
+ ("libxrandr" ,libxrandr)
+ ("libxrender" ,libxrender)
+ ("libxinerama" ,libxinerama)
+ ("libxshmfence" ,libxshmfence)
+ ("cups" ,cups)
+ ("ffmpeg" ,ffmpeg-2.8)
+ ("libjpeg" ,libjpeg)
+ ("pulseaudio" ,pulseaudio)
+ ("alsa-lib" ,alsa-lib)
+ ("zlib" ,zlib)
+ ("openssl" ,openssl)))
+ (arguments
+ `(#:configure-flags
+ (list "-DCMAKE_INSTALL_LIBDIR=lib"
+ "-DCMAKE_BUILD_TYPE=RELEASE"
+ "-DWITH_JPEG=ON"
+ ,@(if (string-prefix? "x86_64"
+ (or (%current-target-system)
+ (%current-system)))
+ '("-DWITH_SSE2=ON")
+ '())
+ (string-append "-DDOCBOOKXSL_DIR="
+ (assoc-ref %build-inputs "docbook-xsl")
+ "/xml/xsl/docbook-xsl-"
+ ,(package-version docbook-xsl))
+ "-DWITH_PULSE=ON"
+ "-DWITH_CUPS=ON")
+ #:tests? #f)) ; no 'test' target
+ (home-page "https://www.freerdp.com")
+ (synopsis "Remote Desktop Protocol implementation")
+ (description "FreeRDP implements Microsoft's Remote Desktop Protocol.
+It consists of the @code{xfreerdp} client, libraries for client and server
functionality, and Windows Portable Runtime (WinPR), a portable implementation
of parts of the Windows API.")
- (license license:asl2.0)))
+ (license license:asl2.0))))
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 25b2dd33f7..243ff9e5db 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -464,13 +464,13 @@ expectations and mocks frameworks.")
(define-public bundler
(package
(name "bundler")
- (version "1.15.3")
+ (version "1.15.4")
(source (origin
(method url-fetch)
(uri (rubygems-uri "bundler" version))
(sha256
(base32
- "125amldnpzzrfw76mmr7mlx002k1k6xdyrqf5bdnzl5hajvn0s5f"))))
+ "0wl4r7wbwdq68xidfv4hhzfb1spb6lmhbspwlzrg4pf1l6ipxlgs"))))
(build-system ruby-build-system)
(arguments
'(#:tests? #f)) ; avoid dependency cycles
diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm
index 37307c807b..f1b408982c 100644
--- a/gnu/packages/shells.scm
+++ b/gnu/packages/shells.scm
@@ -148,7 +148,7 @@ highlighting.")
(source
(origin
(method url-fetch)
- (uri (string-append "https://dist.pragmatique.xyz/fish-guix/"
+ (uri (string-append "https://dist.infotropique.org/fish-guix/"
name "-" version ".tar.xz"))
(sha256
(base32
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index bdee8e59c7..685042240a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -65,7 +65,7 @@
(define-public pspp
(package
(name "pspp")
- (version "0.10.2")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
@@ -73,7 +73,7 @@
version ".tar.gz"))
(sha256
(base32
- "1afsq0a3iij64qacczvwhk81qg0q5rfqm055y5h9ls28d6paqz7p"))))
+ "10yb8nknh33c1y2ji3gww5dcnx9n3nqgsj6yfb4wibdjypa1m68v"))))
(build-system gnu-build-system)
(inputs
`(("cairo" ,cairo)
@@ -126,6 +126,12 @@ be output in text, PostScript, PDF or HTML.")
"PKG_BUILT_STAMP=1970-01-01")
#:phases
(modify-phases %standard-phases
+ ;; FIXME: see bug #28157.
+ (add-before 'configure 'patch-which
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "src/library/base/R/unix/system.unix.R"
+ (("@WHICH@") "which"))
+ #t))
(add-before 'configure 'patch-uname
(lambda* (#:key inputs #:allow-other-keys)
(let ((uname-bin (string-append (assoc-ref inputs "coreutils")
@@ -227,7 +233,6 @@ be output in text, PostScript, PDF or HTML.")
("perl" ,perl)
("pkg-config" ,pkg-config)
("texinfo" ,texinfo) ; for building HTML manuals
- ("which" ,which) ; for tests/Examples/base-Ex.R
("tzdata" ,tzdata-2017a)
("xz" ,xz)))
(inputs
@@ -246,6 +251,9 @@ be output in text, PostScript, PDF or HTML.")
("pcre" ,pcre)
("readline" ,readline)
("zlib" ,zlib)))
+ ;; FIXME: By default Sys.which embeds a reference to "which", but this
+ ;; reference is not detected by Guix (see bug #28157).
+ (propagated-inputs `(("which" ,which)))
(native-search-paths
(list (search-path-specification
(variable "R_LIBS_SITE")
@@ -4724,7 +4732,8 @@ multivariate analysis.")
"The trimmed k-means clustering method by Cuesta-Albertos, Gordaliza and
Matran (1997). This optimizes the k-means criterion under trimming a portion
of the points.")
- (license license:gpl2+)))
+ ;; Any GPL version
+ (license (list license:gpl2+ license:gpl3+))))
(define-public r-fpc
(package
diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm
index f434006656..80c45c396c 100644
--- a/gnu/packages/syndication.scm
+++ b/gnu/packages/syndication.scm
@@ -18,6 +18,7 @@
#:use-module (guix download)
#:use-module (guix packages)
#:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
#:use-module (gnu packages gettext)
@@ -37,6 +38,7 @@
(method url-fetch)
(uri (string-append "https://newsbeuter.org/downloads/newsbeuter-"
version ".tar.gz"))
+ (patches (search-patches "newsbeuter-CVE-2017-12904.patch"))
(sha256
(base32
"1j1x0hgwxz11dckk81ncalgylj5y5fgw5bcmp9qb5hq9kc0vza3l"))))
diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index 9d3e9d9e97..111a1c3734 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -112,7 +112,7 @@ in intelligent transportation networks.")
(define-public p11-kit
(package
(name "p11-kit")
- (version "0.23.7")
+ (version "0.23.8")
(source
(origin
(method url-fetch)
@@ -120,7 +120,7 @@ in intelligent transportation networks.")
"download/" version "/p11-kit-" version ".tar.gz"))
(sha256
(base32
- "0hdy4h8byvcvd4av504xqfqyd1h6xy914j034mq3c6v4ya37r3lq"))))
+ "0gqk1d09yyin75lvlywpbf3kxlnrcwbq8ridgapvqqjbzvjk98ab"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@@ -667,7 +667,7 @@ OpenSSL libraries).")
(define-public perl-crypt-openssl-bignum
(package
(name "perl-crypt-openssl-bignum")
- (version "0.06")
+ (version "0.08")
(source
(origin
(method url-fetch)
@@ -677,7 +677,7 @@ OpenSSL libraries).")
".tar.gz"))
(sha256
(base32
- "05yzrdglrrzp191krf77zrwfkmzrfwrsrx1vyskbj94522lszk67"))))
+ "0gamn4dff1bz77nswacy1dlpn9fkwahzw7yvvik4nbwwy2s63hc8"))))
(build-system perl-build-system)
(inputs `(("openssl" ,openssl)))
(arguments perl-crypt-arguments)
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 7c1f02d5ad..36a6b7cd18 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -9,7 +9,7 @@
;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015 Kyle Meyer <kyle@kyleam.com>
;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016, 2017 ng0 <contact.ng0@cryptolab.net>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com>
@@ -121,6 +121,8 @@ as well as the classic centralized workflow.")
(define-public git
(package
(name "git")
+ ;; XXX When updating Git, check if the special 'git:src' input to cgit needs
+ ;; to be updated as well.
(version "2.14.1")
(source (origin
(method url-fetch)
@@ -349,23 +351,6 @@ everything from small to very large projects with speed and efficiency.")
(license license:gpl2)
(home-page "https://git-scm.com/")))
-;; Some dependent packages directly access internal interfaces which
-;; have changed in 2.12. TODO: Remove this for cgit > 1.1.
-(define-public git@2.10
- (package
- (inherit git)
- (version "2.10.4")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://kernel.org/software/scm/git/git-"
- version ".tar.xz"))
- (sha256
- (base32
- "1pni4mgih5w42813dxljl61s7xmcpdnar34d9m4548hzpljjyd4l"))))
- (arguments
- `(#:tests? #f
- ,@(package-arguments git)))))
-
(define-public libgit2
(package
(name "libgit2")
@@ -502,6 +487,8 @@ collaboration using typical untrusted file hosts or services.")
(define-public cgit
(package
(name "cgit")
+ ;; XXX When updating cgit, try removing the special 'git:src' input and
+ ;; using the source of the git package.
(version "1.1")
(source (origin
(method url-fetch)
@@ -546,7 +533,16 @@ collaboration using typical untrusted file hosts or services.")
;; For building manpage.
`(("asciidoc" ,asciidoc)))
(inputs
- `(("git:src" ,(package-source git@2.10))
+ `(;; Cgit directly accesses some internal Git interfaces that changed in
+ ;; Git 2.12. Try removing this special input and using the source of the
+ ;; Git package for cgit > 1.1.
+ ("git:src"
+ ,(origin
+ (method url-fetch)
+ (uri "mirror://kernel.org/software/scm/git/git-2.10.4.tar.xz")
+ (sha256
+ (base32
+ "1pni4mgih5w42813dxljl61s7xmcpdnar34d9m4548hzpljjyd4l"))))
("openssl" ,openssl)
("zlib" ,zlib)))
(home-page "https://git.zx2c4.com/cgit/")
@@ -1341,16 +1337,21 @@ repository\" with git-annex.")
(define-public fossil
(package
(name "fossil")
- (version "1.35")
+ (version "2.2")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://www.fossil-scm.org/index.html/uv/download/"
- "fossil-src-" version ".tar.gz"))
+ ;; Older downloads are moved to another URL.
+ (uri (list
+ (string-append
+ "https://www.fossil-scm.org/index.html/uv/download/"
+ "fossil-src-" version ".tar.gz")
+ (string-append
+ "https://www.fossil-scm.org/index.html/uv/"
+ "fossil-src-" version ".tar.gz")))
(sha256
(base32
- "07ds6rhq69bhydpm9a01mgdhxf88p9b6y5hdnhn8gjc7ba92zyf1"))))
+ "0wfgacfg29dkl0c3l1rp5ji0kraa64gcbg5lh8p4m7mqdqcq53wv"))))
(build-system gnu-build-system)
(native-inputs
`(("tcl" ,tcl) ;for configuration only
@@ -1379,9 +1380,6 @@ repository\" with git-annex.")
(lambda _
(setenv "USER" "guix")
(setenv "TZ" "UTC")
- ;; Fixing the th1 test would require many backports, so
- ;; just disable for now.
- (delete-file "test/th1.test")
#t)))))
(home-page "https://fossil-scm.org")
(synopsis "Software configuration management system")
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 610b258dfc..2057307a30 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -1121,7 +1121,7 @@ access to mpv's powerful playback capabilities.")
(define-public youtube-dl
(package
(name "youtube-dl")
- (version "2017.08.13")
+ (version "2017.08.18")
(source (origin
(method url-fetch)
(uri (string-append "https://yt-dl.org/downloads/"
@@ -1129,7 +1129,7 @@ access to mpv's powerful playback capabilities.")
version ".tar.gz"))
(sha256
(base32
- "1parn0xda7mp1phcj19axldifgh6mcwia6wdi3m20kidc9m4wb11"))))
+ "1mn3wi31k62c6drpplzp2irygjhiwprj5k7w4m0g8m4bgfdjgx57"))))
(build-system python-build-system)
(arguments
;; The problem here is that the directory for the man page and completion
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index 7db81ee57d..818d2d207f 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
-;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017 ng0 <ng0@no-reply.pragmatique.xyz>
;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
@@ -648,24 +648,46 @@ refactor Vim in order to:
(define-public vifm
(package
(name "vifm")
- (version "0.8.2")
+ (version "0.9")
(source
(origin
(method url-fetch)
- (uri (string-append "mirror://sourceforge/vifm/vifm/vifm-"
- version ".tar.bz2"))
+ (uri (list
+ (string-append "https://github.com/vifm/vifm/releases/download/v"
+ version "/vifm-" version ".tar.bz2")
+ (string-append "https://sourceforge.net/projects/vifm/files/vifm/"
+ "vifm-" version ".tar.bz2")))
(sha256
(base32
- "07r15kq7kjl3a41sd11ncpsii866xxps4f90zh3lv8jqcrv6silb"))))
+ "1zd72vcgir3g9rhs2iyca13qf5fc0b1f22y20f5gy92c3sfwj45b"))))
(build-system gnu-build-system)
(arguments
- '(#:phases
+ '(#:configure-flags '("--disable-build-timestamp")
+ #:phases
(modify-phases %standard-phases
(add-after 'patch-source-shebangs 'patch-test-shebangs
(lambda _
- (substitute* (find-files "tests" "\\.c$")
- (("/bin/sh") (which "sh")))
- #t)))))
+ (substitute* (cons* "src/background.c"
+ "src/cfg/config.c"
+ (find-files "tests" "\\.c$"))
+ (("/bin/sh") (which "sh"))
+ (("/bin/bash") (which "bash")))
+ ;; This test segfaults
+ (substitute* "tests/Makefile"
+ (("misc") ""))
+ #t))
+ (add-after 'install 'install-vim-plugin-files
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (vifm (string-append out "/share/vifm"))
+ (vimfiles (string-append out "/share/vim/vimfiles")))
+ (copy-recursively (string-append vifm "/colors")
+ (string-append vimfiles "/colors"))
+ (copy-recursively (string-append vifm "/vim")
+ vimfiles)
+ (delete-file-recursively (string-append vifm "/colors"))
+ (delete-file-recursively (string-append vifm "/vim")))
+ #t)))))
(native-inputs
`(("groff" ,groff) ; for the documentation
("perl" ,perl)))
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 09c60ac0e4..d46b6c8ec3 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -933,7 +933,7 @@ minimum to provide high performance operation.")
(define-public sassc
;; libsass must be statically linked and it isn't included in the sassc
;; release tarballs, hence this odd package recipe.
- (let* ((version "3.2.5")
+ (let* ((version "3.4.5")
(libsass
(origin
(method url-fetch)
@@ -943,7 +943,7 @@ minimum to provide high performance operation.")
(file-name (string-append "libsass-" version ".tar.gz"))
(sha256
(base32
- "1x25k6p1s1yzsdpzb7bzh8japilmi1mk3z96q66pycbinj9z9is4")))))
+ "1j22138l5ymqjfj5zan9d2hipa3ahjmifgpjahqy1smlg5sb837x")))))
(package
(name "sassc")
(version version)
@@ -954,11 +954,16 @@ minimum to provide high performance operation.")
(file-name (string-append "sassc-" version ".tar.gz"))
(sha256
(base32
- "1xf3w75w840rj0nx375rxi7mcv1ngqqq8p3zrzjlyx8jfpnldmv5"))))
+ "1xk4kmmvziz9sal3swpqa10q0s289xjpcz8aggmly8mvxvmngsi9"))))
(build-system gnu-build-system)
(arguments
- `(#:make-flags '("CC=gcc")
+ `(#:make-flags
+ (list "CC=gcc"
+ (string-append "PREFIX=" (assoc-ref %outputs "out")))
#:test-target "test"
+ ;; FIXME: "make test" rebuilds the application and gets lost in a
+ ;; non-existing directory.
+ #:tests? #f
#:phases
(modify-phases %standard-phases
(delete 'configure)
@@ -968,13 +973,7 @@ minimum to provide high performance operation.")
(begin
(setenv "SASS_LIBSASS_PATH"
(string-append (getcwd) "/libsass-" ,version))
- #t))))
- (replace 'install ; no install target
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
- (mkdir-p bin)
- (copy-file "bin/sassc" (string-append bin "/sassc"))
- #t))))))
+ #t)))))))
(inputs
`(("libsass" ,libsass)))
(synopsis "CSS pre-processor")
@@ -4920,3 +4919,67 @@ responsive, and powerful applications with minimal effort.")
communicate with each other, with Shiny or without (i.e. static @code{.html}
files). It currently supports linked brushing and filtering.")
(license l:expat)))
+
+(define-public r-rook
+ (package
+ (name "r-rook")
+ (version "1.1-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Rook" version))
+ (sha256
+ (base32
+ "00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"))))
+ (properties `((upstream-name . "Rook")))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-brew" ,r-brew)))
+ (home-page "http://cran.r-project.org/web/packages/Rook")
+ (synopsis "Web server interface for R")
+ (description
+ "This package contains the Rook specification and convenience software
+for building and running Rook applications. A Rook application is an R
+reference class object that implements a @code{call} method or an R closure
+that takes exactly one argument, an environment, and returns a list with three
+named elements: the @code{status}, the @code{headers}, and the @code{body}.")
+ (license l:gpl2)))
+
+(define-public rss-bridge
+ (package
+ (name "rss-bridge")
+ (version "2017-08-03")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/RSS-Bridge/rss-bridge/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "05s16y552hbyj91s7bnlkx1bi64s6aw0fjy29az8via3i3b21yhl"))))
+ (build-system trivial-build-system)
+ (native-inputs
+ `(("gzip" ,gzip)
+ ("tar" ,tar)))
+ (arguments
+ '(#:modules ((guix build utils))
+ #:builder
+ (begin
+ (use-modules (guix build utils)
+ (ice-9 match))
+ (let* ((out (assoc-ref %outputs "out"))
+ (share-rss-bridge (string-append out "/share/rss-bridge")))
+ (set-path-environment-variable
+ "PATH" '("bin") (map (match-lambda ((_ . input) input))
+ %build-inputs))
+ (mkdir-p share-rss-bridge)
+ (system* "tar" "xvf" (assoc-ref %build-inputs "source")
+ "--strip-components" "1" "-C" share-rss-bridge)
+ #t))))
+ (home-page "https://github.com/RSS-Bridge/rss-bridge")
+ (synopsis "Generate Atom feeds for social networking websites")
+ (description "rss-bridge generates Atom feeds for social networking
+websites lacking feeds. Supported websites include Facebook, Twitter,
+Instagram and YouTube.")
+ (license (list l:public-domain
+ l:expat)))) ;; vendor/simplehtmldom/simple_html_dom.php
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 2b6ea4f235..5ba29c3b3d 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -73,7 +73,7 @@
(define-public libconfuse
(package
(name "libconfuse")
- (version "3.2")
+ (version "3.2.1")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/martinh/libconfuse/"
@@ -81,7 +81,7 @@
"/confuse-" version ".tar.xz"))
(sha256
(base32
- "0j2fg93w22apjfqnkak8k8m395n2l7hhm9xnjx0k2v82js3bnsm4"))))
+ "0pnjmlj9i0alp407qd7c0vq83sz7gpsjrbdgpcn4xvzjp9r35ii3"))))
(build-system gnu-build-system)
(home-page "https://github.com/martinh/libconfuse")
(synopsis "Configuration file parser library")
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index 9e003bb51b..af217ef679 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -3220,7 +3220,8 @@ This driver is intended for ATI Rage 128 based cards.")
".tar.bz2"))
(sha256
(base32
- "1g2r6gxqrmjdff95d42msxdw6vmkg2zn5sqv0rxd420iwy8wdwyh"))))
+ "1g2r6gxqrmjdff95d42msxdw6vmkg2zn5sqv0rxd420iwy8wdwyh"))
+ (patches (search-patches "xf86-video-siliconmotion-fix-ftbfs.patch"))))
(build-system gnu-build-system)
(inputs `(("xorg-server" ,xorg-server)))
(native-inputs `(("pkg-config" ,pkg-config)))
diff --git a/gnu/services/databases.scm b/gnu/services/databases.scm
index 3b64d0e075..de1f6b8411 100644
--- a/gnu/services/databases.scm
+++ b/gnu/services/databases.scm
@@ -216,6 +216,14 @@ and stores the database cluster in @var{data-directory}."
(home-directory "/var/empty")
(shell (file-append shadow "/sbin/nologin")))))
+(define memcached-activation
+ #~(begin
+ (use-modules (guix build utils))
+ (let ((user (getpwnam "memcached")))
+ (mkdir-p "/var/run/memcached")
+ (chown "/var/run/memcached"
+ (passwd:uid user) (passwd:gid user)))))
+
(define memcached-shepherd-service
(match-lambda
(($ <memcached-configuration> memcached interfaces tcp-port udp-port
@@ -233,11 +241,14 @@ and stores the database cluster in @var{data-directory}."
"-p" #$(number->string tcp-port)
"-U" #$(number->string udp-port)
"--daemon"
- "-P" "/var/run/memcached.pid"
+ ;; Memcached changes to the memcached user prior to
+ ;; writing the pid file, so write it to a directory
+ ;; that memcached owns.
+ "-P" "/var/run/memcached/pid"
"-u" "memcached"
,#$@additional-options)
#:log-file "/var/log/memcached"
- #:pid-file "/var/run/memcached.pid"))
+ #:pid-file "/var/run/memcached/pid"))
(stop #~(make-kill-destructor))))))))
(define memcached-service-type
@@ -245,6 +256,8 @@ and stores the database cluster in @var{data-directory}."
(extensions
(list (service-extension shepherd-root-service-type
memcached-shepherd-service)
+ (service-extension activation-service-type
+ (const memcached-activation))
(service-extension account-service-type
(const %memcached-accounts))))
(default-value (memcached-configuration))))
diff --git a/gnu/services/web.scm b/gnu/services/web.scm
index c605d76866..cc7adeb5e4 100644
--- a/gnu/services/web.scm
+++ b/gnu/services/web.scm
@@ -114,105 +114,109 @@
(define (config-domain-strings names)
"Return a string denoting the nginx config representation of NAMES, a list
of domain names."
- (string-join
- (map (match-lambda
+ (map (match-lambda
('default "_ ")
- ((? string? str) (string-append str " ")))
- names)))
+ ((? string? str) (list str " ")))
+ names))
(define (config-index-strings names)
"Return a string denoting the nginx config representation of NAMES, a list
of index files."
- (string-join
- (map (match-lambda
- ((? string? str) (string-append str " ")))
- names)))
+ (map (match-lambda
+ ((? string? str) (list str " ")))
+ names))
-(define nginx-location-config
+(define emit-nginx-location-config
(match-lambda
(($ <nginx-location-configuration> uri body)
- (string-append
+ (list
" location " uri " {\n"
- " " (string-join body "\n ") "\n"
+ (map (lambda (x) (list " " x "\n")) body)
" }\n"))
(($ <nginx-named-location-configuration> name body)
- (string-append
+ (list
" location @" name " {\n"
- " " (string-join body "\n ") "\n"
+ (map (lambda (x) (list " " x "\n")) body)
" }\n"))))
-(define (default-nginx-server-config server)
- (string-append
- " server {\n"
- (if (nginx-server-configuration-http-port server)
- (string-append " listen "
- (number->string (nginx-server-configuration-http-port server))
- ";\n")
- "")
- (if (nginx-server-configuration-https-port server)
- (string-append " listen "
- (number->string (nginx-server-configuration-https-port server))
- " ssl;\n")
- "")
- " server_name " (config-domain-strings
- (nginx-server-configuration-server-name server))
- ";\n"
- (if (nginx-server-configuration-ssl-certificate server)
- (let ((certificate (nginx-server-configuration-ssl-certificate server)))
- ;; lstat fails when the certificate file does not exist: it aborts
- ;; and lets the user fix their configuration.
- (lstat certificate)
- (string-append " ssl_certificate " certificate ";\n"))
- "")
- (if (nginx-server-configuration-ssl-certificate-key server)
- (let ((key (nginx-server-configuration-ssl-certificate-key server)))
- (lstat key)
- (string-append " ssl_certificate_key " key ";\n"))
- "")
- " root " (nginx-server-configuration-root server) ";\n"
- " index " (config-index-strings (nginx-server-configuration-index server)) ";\n"
- " server_tokens " (if (nginx-server-configuration-server-tokens? server)
- "on" "off") ";\n"
- "\n"
- (string-join
- (map nginx-location-config (nginx-server-configuration-locations server))
- "\n")
- " }\n"))
+(define (emit-nginx-server-config server)
+ (let ((http-port (nginx-server-configuration-http-port server))
+ (https-port (nginx-server-configuration-https-port server))
+ (server-name (nginx-server-configuration-server-name server))
+ (ssl-certificate (nginx-server-configuration-ssl-certificate server))
+ (ssl-certificate-key
+ (nginx-server-configuration-ssl-certificate-key server))
+ (root (nginx-server-configuration-root server))
+ (index (nginx-server-configuration-index server))
+ (server-tokens? (nginx-server-configuration-server-tokens? server))
+ (locations (nginx-server-configuration-locations server)))
+ (define-syntax-parameter <> (syntax-rules ()))
+ (define-syntax-rule (and/l x tail ...)
+ (let ((x* x))
+ (if x*
+ (syntax-parameterize ((<> (identifier-syntax x*)))
+ (list tail ...))
+ '())))
+ (for-each
+ (match-lambda
+ ((record-key . file)
+ (if (and file (not (file-exists? file)))
+ (error
+ (simple-format
+ #f
+ "~A in the nginx configuration for the server with name \"~A\" does not exist" record-key server-name)))))
+ `(("ssl-certificate" . ,ssl-certificate)
+ ("ssl-certificate-key" . ,ssl-certificate-key)))
+ (list
+ " server {\n"
+ (and/l http-port " listen " (number->string <>) ";\n")
+ (and/l https-port " listen " (number->string <>) " ssl;\n")
+ " server_name " (config-domain-strings server-name) ";\n"
+ (and/l ssl-certificate " ssl_certificate " <> ";\n")
+ (and/l ssl-certificate-key " ssl_certificate_key " <> ";\n")
+ " root " root ";\n"
+ " index " (config-index-strings index) ";\n"
+ " server_tokens " (if server-tokens? "on" "off") ";\n"
+ "\n"
+ (map emit-nginx-location-config locations)
+ "\n"
+ " }\n")))
-(define (nginx-upstream-config upstream)
- (string-append
+(define (emit-nginx-upstream-config upstream)
+ (list
" upstream " (nginx-upstream-configuration-name upstream) " {\n"
- (string-concatenate
- (map (lambda (server)
- (simple-format #f " server ~A;\n" server))
- (nginx-upstream-configuration-servers upstream)))
+ (map (lambda (server)
+ (simple-format #f " server ~A;\n" server))
+ (nginx-upstream-configuration-servers upstream))
" }\n"))
+(define (flatten . lst)
+ "Return a list that recursively concatenates all sub-lists of LST."
+ (define (flatten1 head out)
+ (if (list? head)
+ (fold-right flatten1 out head)
+ (cons head out)))
+ (fold-right flatten1 '() lst))
+
(define (default-nginx-config nginx log-directory run-directory server-list upstream-list)
- (mixed-text-file "nginx.conf"
- "user nginx nginx;\n"
- "pid " run-directory "/pid;\n"
- "error_log " log-directory "/error.log info;\n"
- "http {\n"
- " client_body_temp_path " run-directory "/client_body_temp;\n"
- " proxy_temp_path " run-directory "/proxy_temp;\n"
- " fastcgi_temp_path " run-directory "/fastcgi_temp;\n"
- " uwsgi_temp_path " run-directory "/uwsgi_temp;\n"
- " scgi_temp_path " run-directory "/scgi_temp;\n"
- " access_log " log-directory "/access.log;\n"
- " include " nginx "/share/nginx/conf/mime.types;\n"
- "\n"
- (string-join
- (filter (lambda (section) (not (null? section)))
- (map nginx-upstream-config upstream-list))
- "\n")
- "\n"
- (let ((http (map default-nginx-server-config server-list)))
- (do ((http http (cdr http))
- (block "" (string-append (car http) "\n" block )))
- ((null? http) block)))
- "}\n"
- "events {}\n"))
+ (apply mixed-text-file "nginx.conf"
+ (flatten
+ "user nginx nginx;\n"
+ "pid " run-directory "/pid;\n"
+ "error_log " log-directory "/error.log info;\n"
+ "http {\n"
+ " client_body_temp_path " run-directory "/client_body_temp;\n"
+ " proxy_temp_path " run-directory "/proxy_temp;\n"
+ " fastcgi_temp_path " run-directory "/fastcgi_temp;\n"
+ " uwsgi_temp_path " run-directory "/uwsgi_temp;\n"
+ " scgi_temp_path " run-directory "/scgi_temp;\n"
+ " access_log " log-directory "/access.log;\n"
+ " include " nginx "/share/nginx/conf/mime.types;\n"
+ "\n"
+ (map emit-nginx-upstream-config upstream-list)
+ (map emit-nginx-server-config server-list)
+ "}\n"
+ "events {}\n")))
(define %nginx-accounts
(list (user-group (name "nginx") (system? #t))
diff --git a/gnu/system/examples/bare-bones.tmpl b/gnu/system/examples/bare-bones.tmpl
index f7b8823d4f..a10ee6e7fe 100644
--- a/gnu/system/examples/bare-bones.tmpl
+++ b/gnu/system/examples/bare-bones.tmpl
@@ -12,7 +12,9 @@
;; Assuming /dev/sdX is the target hard disk, and "my-root" is
;; the label of the target root file system.
- (bootloader (grub-configuration (device "/dev/sdX")))
+ (bootloader (bootloader-configuration
+ (bootloader grub-bootloader)
+ (device "/dev/sdX")))
(file-systems (cons (file-system
(device "my-root")
(title 'label)
diff --git a/gnu/system/examples/desktop.tmpl b/gnu/system/examples/desktop.tmpl
index 8b02659478..3cfbd9add6 100644
--- a/gnu/system/examples/desktop.tmpl
+++ b/gnu/system/examples/desktop.tmpl
@@ -13,19 +13,20 @@
;; Assuming /dev/sdX is the target hard disk, and "my-root"
;; is the label of the target root file system.
- (bootloader (grub-configuration (device "/dev/sdX")))
+ (bootloader (bootloader-configuration
+ (bootloader grub-bootloader)
+ (device "/dev/sdX")))
;; Specify a mapped device for the encrypted root partition.
;; The UUID is that returned by 'cryptsetup luksUUID'.
(mapped-devices
(list (mapped-device
(source (uuid "12345678-1234-1234-1234-123456789abc"))
- (target "the-root-device")
+ (target "my-root")
(type luks-device-mapping))))
(file-systems (cons (file-system
(device "my-root")
- (title 'label)
(mount-point "/")
(type "ext4")
(dependencies mapped-devices))
diff --git a/gnu/system/examples/lightweight-desktop.tmpl b/gnu/system/examples/lightweight-desktop.tmpl
index 6fb6283d29..127ceb4dc5 100644
--- a/gnu/system/examples/lightweight-desktop.tmpl
+++ b/gnu/system/examples/lightweight-desktop.tmpl
@@ -12,9 +12,10 @@
(locale "en_US.utf8")
;; Use the UEFI variant of GRUB with the EFI System
- ;; Partition on /dev/sda1.
- (bootloader (grub-configuration (grub grub-efi)
- (device "/dev/sda1")))
+ ;; Partition mounted on /boot/efi.
+ (bootloader (bootloader-configuration
+ (bootloader grub-efi-bootloader)
+ (device "/boot/efi")))
;; Assume the target root file system is labelled "my-root".
(file-systems (cons* (file-system
diff --git a/gnu/tests/databases.scm b/gnu/tests/databases.scm
index 310210c368..9d9a753747 100644
--- a/gnu/tests/databases.scm
+++ b/gnu/tests/databases.scm
@@ -63,13 +63,15 @@
(test-begin "memcached")
;; Wait for memcached to be up and running.
- (test-eq "service running"
- 'running!
+ (test-assert "service running"
(marionette-eval
'(begin
(use-modules (gnu services herd))
- (start-service 'memcached)
- 'running!)
+ (match (start-service 'memcached)
+ (#f #f)
+ (('service response-parts ...)
+ (match (assq-ref response-parts 'running)
+ ((pid) (number? pid))))))
marionette))
(let* ((ai (car (getaddrinfo "localhost"
diff --git a/guix/scripts/download.scm b/guix/scripts/download.scm
index bb3dc76741..f40213be33 100644
--- a/guix/scripts/download.scm
+++ b/guix/scripts/download.scm
@@ -143,12 +143,15 @@ Supported formats: 'nix-base32' (default), 'base32', and 'base16'
(arg (or (assq-ref opts 'argument)
(leave (G_ "no download URI was specified~%"))))
(uri (or (string->uri arg)
+ (false-if-exception
+ (string->uri
+ (string-append "file://" (canonicalize-path arg))))
(leave (G_ "~a: failed to parse URI~%")
arg)))
(fetch (assq-ref opts 'download-proc))
(path (parameterize ((current-terminal-columns
(terminal-columns)))
- (fetch arg
+ (fetch (uri->string uri)
#:verify-certificate?
(assq-ref opts 'verify-certificate?))))
(hash (call-with-input-file
diff --git a/guix/scripts/pack.scm b/guix/scripts/pack.scm
index 1273c09f54..c269a1fefc 100644
--- a/guix/scripts/pack.scm
+++ b/guix/scripts/pack.scm
@@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -50,19 +51,20 @@
(compressor name extension command)
compressor?
(name compressor-name) ;string (e.g., "gzip")
- (extension compressor-extension) ;string (e.g., "lz")
+ (extension compressor-extension) ;string (e.g., ".lz")
(command compressor-command)) ;gexp (e.g., #~("/gnu/store/…/gzip" "-9n"))
(define %compressors
;; Available compression tools.
- (list (compressor "gzip" "gz"
+ (list (compressor "gzip" ".gz"
#~(#+(file-append gzip "/bin/gzip") "-9n"))
- (compressor "lzip" "lz"
+ (compressor "lzip" ".lz"
#~(#+(file-append lzip "/bin/lzip") "-9"))
- (compressor "xz" "xz"
+ (compressor "xz" ".xz"
#~(#+(file-append xz "/bin/xz") "-e -T0"))
- (compressor "bzip2" "bz2"
- #~(#+(file-append bzip2 "/bin/bzip2") "-9"))))
+ (compressor "bzip2" ".bz2"
+ #~(#+(file-append bzip2 "/bin/bzip2") "-9"))
+ (compressor "none" "" #f)))
(define (lookup-compressor name)
"Return the compressor object called NAME. Error out if it could not be
@@ -180,7 +182,7 @@ added to the pack."
(_ #f))
directives)))))))))
- (gexp->derivation (string-append name ".tar."
+ (gexp->derivation (string-append name ".tar"
(compressor-extension compressor))
build
#:references-graphs `(("profile" ,profile))))
@@ -245,7 +247,7 @@ the image."
#:compressor '#$(compressor-command compressor)
#:creation-time (make-time time-utc 0 1)))))
- (gexp->derivation (string-append name ".tar."
+ (gexp->derivation (string-append name ".tar"
(compressor-extension compressor))
build
#:references-graphs `(("profile" ,profile))))
diff --git a/nix/libstore/build.cc b/nix/libstore/build.cc
index 63540ddfc1..d68e8b2bc0 100644
--- a/nix/libstore/build.cc
+++ b/nix/libstore/build.cc
@@ -2086,12 +2086,8 @@ void DerivationGoal::runChild()
outside of the namespace. Making a subtree private is
local to the namespace, though, so setting MS_PRIVATE
does not affect the outside world. */
- Strings mounts = tokenizeString<Strings>(readFile("/proc/self/mountinfo", true), "\n");
- foreach (Strings::iterator, i, mounts) {
- vector<string> fields = tokenizeString<vector<string> >(*i, " ");
- string fs = decodeOctalEscaped(fields.at(4));
- if (mount(0, fs.c_str(), 0, MS_PRIVATE, 0) == -1)
- throw SysError(format("unable to make filesystem `%1%' private") % fs);
+ if (mount(0, "/", 0, MS_REC|MS_PRIVATE, 0) == -1) {
+ throw SysError("unable to make ‘/’ private mount");
}
/* Bind-mount chroot directory to itself, to treat it as a
diff --git a/nix/libutil/util.cc b/nix/libutil/util.cc
index c07754487e..768e12b5e4 100644
--- a/nix/libutil/util.cc
+++ b/nix/libutil/util.cc
@@ -1106,21 +1106,6 @@ bool endOfList(std::istream & str)
}
-string decodeOctalEscaped(const string & s)
-{
- string r;
- for (string::const_iterator i = s.begin(); i != s.end(); ) {
- if (*i != '\\') { r += *i++; continue; }
- unsigned char c = 0;
- ++i;
- while (i != s.end() && *i >= '0' && *i < '8')
- c = c * 8 + (*i++ - '0');
- r += c;
- }
- return r;
-}
-
-
void ignoreException()
{
try {
diff --git a/nix/libutil/util.hh b/nix/libutil/util.hh
index e84d64d10a..6a6e07c478 100644
--- a/nix/libutil/util.hh
+++ b/nix/libutil/util.hh
@@ -356,12 +356,6 @@ string parseString(std::istream & str);
bool endOfList(std::istream & str);
-/* Escape a string that contains octal-encoded escape codes such as
- used in /etc/fstab and /proc/mounts (e.g. "foo\040bar" decodes to
- "foo bar"). */
-string decodeOctalEscaped(const string & s);
-
-
/* Exception handling in destructors: print an error message, then
ignore the exception. */
void ignoreException();
diff --git a/tests/guix-download.sh b/tests/guix-download.sh
index ebc853c7fa..30f55fbe2b 100644
--- a/tests/guix-download.sh
+++ b/tests/guix-download.sh
@@ -29,12 +29,15 @@ then false; else true; fi
if guix download unknown://some/where;
then false; else true; fi
-if guix download not/a/uri;
+if guix download /does-not-exist
then false; else true; fi
# This one should succeed.
guix download "file://$abs_top_srcdir/README"
+# And this one, without the URI scheme.
+guix download "$abs_top_srcdir/README"
+
# This one too, even if it cannot talk to the daemon.
output="t-download-$$"
trap 'rm -f "$output"' EXIT