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-rw-r--r--gnu/packages/bioinformatics.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6469e9e1a1..58b29e2a30 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1919,6 +1919,29 @@ files between different genome assemblies. It supports most commonly used
file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.")
(license license:gpl2+)))
+(define-public python-dnaio
+ (package
+ (name "python-dnaio")
+ (version "0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "dnaio" version))
+ (sha256
+ (base32
+ "0f16m7hdlm0fz1n7y5asy0v9ghyrq17ni1p9iybq22ddzyd49r27"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-cython" ,python-cython)
+ ("python-pytest" ,python-pytest)
+ ("python-xopen" ,python-xopen)))
+ (home-page "https://github.com/marcelm/dnaio/")
+ (synopsis "Read FASTA and FASTQ files efficiently")
+ (description
+ "dnaio is a Python library for fast parsing of FASTQ and also FASTA
+files. The code was previously part of the cutadapt tool.")
+ (license license:expat)))
+
(define-public cutadapt
(package
(name "cutadapt")