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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 17e33c34c1..00238531db 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12475,6 +12475,35 @@ cooler). Both @code{hic} and @code{cool} files describe Hi-C contact matrices.") (license license:expat))) +(define-public python-scanorama + (package + (name "python-scanorama") + (version "1.7.2") + (source (origin + (method url-fetch) + (uri (pypi-uri "scanorama" version)) + (sha256 + (base32 + "0il7bf4c7vli2dm2jx7dskh3ymgv8nmk0y90jzgfrnqjzh250x5w")))) + (build-system python-build-system) + (propagated-inputs + (list python-annoy + python-fbpca + python-geosketch + python-intervaltree + python-matplotlib + python-numpy + python-scikit-learn + python-scipy)) + (home-page "https://github.com/brianhie/scanorama") + (synopsis "Panoramic stitching of heterogeneous single cell transcriptomic data") + (description + "Scanorama enables batch-correction and integration of heterogeneous +scRNA-seq datasets, which is described in the paper \"Efficient integration of +heterogeneous single-cell transcriptomes using Scanorama\" by Brian Hie, Bryan +Bryson, and Bonnie Berger.") + (license license:expat))) + (define-public r-pore (package (name "r-pore") |