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authorKonrad Hinsen <konrad.hinsen@fastmail.net>2017-12-19 12:50:22 +0100
committerLudovic Courtès <ludo@gnu.org>2017-12-22 09:46:13 +0100
commitde2032b912ede1756290e7ca9f7af7e9b72627eb (patch)
treed91d8c162c2bf3b3dd71e4eaeea8908377d68979 /gnu
parent4a32f58aa135e97eedf23f725586f9651d726e73 (diff)
downloadguix-de2032b912ede1756290e7ca9f7af7e9b72627eb.tar
guix-de2032b912ede1756290e7ca9f7af7e9b72627eb.tar.gz
gnu: Add python-activepapers.
* gnu/packages/python.scm (python-activepapers, python2-activepapers): New variables. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/python.scm70
1 files changed, 70 insertions, 0 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 1ef54b7fd5..48e8d44ffc 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -12001,3 +12001,73 @@ particularly convenient for use in tests.")
(define-public python2-tempdir
(package-with-python2 python-tempdir))
+(define-public python-activepapers
+ (package
+ (name "python-activepapers")
+ (version "0.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ActivePapers.Py" version))
+ (sha256
+ (base32
+ "12wkhjh90ffipjzv10swndp2xv9hd7xrxvg6v0n4n3i411pj4xb8"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:modules ((ice-9 ftw)
+ (srfi srfi-1)
+ (guix build utils)
+ (guix build python-build-system))
+
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'delete-python2-code
+ (lambda _
+ (for-each delete-file
+ '("lib/activepapers/builtins2.py"
+ "lib/activepapers/standardlib2.py"
+ "lib/activepapers/utility2.py"))))
+ (replace 'check
+ (lambda _
+ ;; Deactivate the test cases that download files
+ (setenv "NO_NETWORK_ACCESS" "1")
+ ;; For some strange reason, some tests fail if nosetests runs all
+ ;; test modules in a single execution. They pass if each test
+ ;; module is run individually.
+ (for-each (lambda (filename)
+ (invoke "nosetests"
+ (string-append "tests/" filename)))
+ (scandir "tests"
+ (lambda (filename)
+ (string-suffix? ".py" filename)))))))))
+ (native-inputs
+ `(("python-tempdir" ,python-tempdir)
+ ("python-nose" ,python-nose)))
+ (propagated-inputs
+ `(("python-h5py" ,python-h5py)))
+ (home-page "http://www.activepapers.org/")
+ (synopsis "Executable papers for scientific computing")
+ (description
+ "ActivePapers is a tool for working with executable papers, which
+combine data, code, and documentation in single-file packages,
+suitable for publication as supplementary material or on repositories
+such as figshare or Zenodo.")
+ (properties `((python2-variant . ,(delay python2-activepapers))))
+ (license license:bsd-3)))
+
+(define-public python2-activepapers
+ (let ((base (package-with-python2
+ (strip-python2-variant python-activepapers))))
+ (package
+ (inherit base)
+ (arguments
+ (substitute-keyword-arguments (package-arguments base)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (delete 'delete-python2-code)
+ (add-after 'unpack 'delete-python3-code
+ (lambda _
+ (for-each delete-file
+ '("lib/activepapers/builtins3.py"
+ "lib/activepapers/standardlib3.py"
+ "lib/activepapers/utility3.py")))))))))))