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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-26 12:19:54 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-04-26 23:47:54 +0200 |
| commit | 936f23a654d4b1a29840792b1802d78e378275a5 (patch) | |
| tree | d199c34a1e6b0b4aed78939738571530d213e9a2 /gnu | |
| parent | 1c3c00a8a19780290e35bf176691fbd93ac617ac (diff) | |
| download | guix-936f23a654d4b1a29840792b1802d78e378275a5.tar guix-936f23a654d4b1a29840792b1802d78e378275a5.tar.gz | |
gnu: Add r-adamgui.
* gnu/packages/bioconductor.scm (r-adamgui): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index fa862d736f..67ee6079c6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1616,6 +1616,54 @@ gene diversity and activity. Each group of genes is called @dfn{Group of functionally associated genes} (GFAG).") (license license:gpl2+))) +(define-public r-adamgui + (package + (name "r-adamgui") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ADAMgui" version)) + (sha256 + (base32 + "0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq")))) + (properties `((upstream-name . "ADAMgui"))) + (build-system r-build-system) + (propagated-inputs + (list r-adam + r-colorramps + r-data-table + r-dplyr + r-dt + r-ggplot2 + r-ggpubr + r-ggrepel + r-ggsignif + r-go-db + r-gridextra + r-knitr + r-rcolorbrewer + r-reshape2 + r-shiny + r-shinyjs + r-stringi + r-stringr + r-testthat + r-varhandle)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/ADAMgui/") + (synopsis "GUI for gene activity and diversity analysis") + (description + "This package @code{ADAMgui} is a @dfn{graphical user interface} (GUI) +for the @code{ADAM} package. The @code{ADAMgui} package provides two +shiny-based applications that allows the user to study the output of the +@code{ADAM} package files through different plots. It's possible, for +example, to choose a specific @dfn{group of functionally associated +genes} (GFAG) and observe the gene expression behavior with the plots created +with the @code{GFAGtargetUi} function. Features such as differential +expression and fold change can be easily seen with aid of the plots made with +the @code{GFAGpathUi} function.") + (license license:gpl2+))) + (define-public r-aneufinder (package (name "r-aneufinder") |