diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2020-04-28 12:23:13 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-04-28 12:23:28 +0200 |
| commit | 545e12f40dcd8cfc779e8802dadead7a7cdc8364 (patch) | |
| tree | 72cc542c1d5cfa261a2be84a6963215bd953d8fc /gnu | |
| parent | 0b2c88382830e281912cc04867f45e15c2f9657f (diff) | |
| download | guix-545e12f40dcd8cfc779e8802dadead7a7cdc8364.tar guix-545e12f40dcd8cfc779e8802dadead7a7cdc8364.tar.gz | |
gnu: Add variant-tools.
* gnu/packages/bioinformatics.scm (variant-tools): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 48b4ade7d8..f90a0bf90c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9158,6 +9158,46 @@ samples into a single report. It contains modules for a large number of common bioinformatics tools.") (license license:gpl3+))) +(define-public variant-tools + (package + (name "variant-tools") + (version "3.1.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/vatlab/varianttools.git") + ;; There is no tag corresponding to version 3.1.2 + (commit "813ae4a90d25b69abc8a40f4f70441fe09015249"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "12ibdmksj7icyqhks4xyvd61bygk4pjmxn618kp6vgk1af01y34g")))) + (build-system python-build-system) + (inputs + `(("boost" ,boost) + ("c-blosc" ,c-blosc) + ("gsl" ,gsl) + ("hdf5" ,hdf5) + ("hdf5-blosc" ,hdf5-blosc) + ("python-cython" ,python-cython) + ("zlib" ,zlib))) + (propagated-inputs + `(("python-numpy" ,python-numpy) + ("python-pycurl" ,python-pycurl) + ("python-pyzmq" ,python-pyzmq) + ("python-scipy" ,python-scipy) + ("python-tables" ,python-tables))) + (home-page "https://vatlab.github.io/vat-docs/") + (synopsis "Analyze genetic variants from Next-Gen sequencing studies") + (description + "Variant tools is a tool for the manipulation, annotation, +selection, simulation, and analysis of variants in the context of next-gen +sequencing analysis. Unlike some other tools used for next-gen sequencing +analysis, variant tools is project based and provides a whole set of tools to +manipulate and analyze genetic variants.") + (license license:gpl3+))) + (define-public r-chipseq (package (name "r-chipseq") |