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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-24 12:09:05 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-24 20:36:51 +0100 |
| commit | f33cb7ab7e85fcf29f4ebb97faf679e174edf2eb (patch) | |
| tree | dc0f4370f6393ecf0cdcd47f221ac24efa4b6c93 /gnu | |
| parent | 79db3a1a33304de59b9b8ced29778ee2ebe44235 (diff) | |
| download | guix-f33cb7ab7e85fcf29f4ebb97faf679e174edf2eb.tar guix-f33cb7ab7e85fcf29f4ebb97faf679e174edf2eb.tar.gz | |
gnu: Add r-bedr.
* gnu/packages/cran.scm (r-bedr): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/cran.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index b6df127d2f..fc84b9fb54 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -40,6 +40,7 @@ #:use-module (guix build-system r) #:use-module (gnu packages algebra) #:use-module (gnu packages base) + #:use-module (gnu packages bioinformatics) #:use-module (gnu packages compression) #:use-module (gnu packages curl) #:use-module (gnu packages databases) @@ -11873,3 +11874,36 @@ extensions.") "This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.") (license license:gpl2+))) + +(define-public r-bedr + (package + (name "r-bedr") + (version "1.0.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "bedr" version)) + (sha256 + (base32 + "0q790695h8bls0qw284n1zn7lxzym1dnnj095fsbjga2p116z4yv")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-r-utils" ,r-r-utils) + ("r-testthat" ,r-testthat) + ("r-venndiagram" ,r-venndiagram) + ("r-yaml" ,r-yaml) + ("bedops" ,bedops) + ("bedtools" ,bedtools) + ("htslib" ,htslib))) ; for tabix + (native-inputs + `(("r-knitr" ,r-knitr))) ; for vignettes + (home-page "https://cran.r-project.org/web/packages/bedr") + (synopsis "Genomic region processing") + (description + "This package is for genomic regions processing using command line tools +such as BEDTools, BEDOPS and Tabix. These tools offer scalable and efficient +utilities to perform genome arithmetic e.g indexing, formatting and merging. +The bedr package's API enhances access to these tools as well as offers +additional utilities for genomic regions processing.") + (license license:gpl2))) |