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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-08-31 18:20:19 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-08-31 18:24:51 +0200 |
| commit | deee5ddaf42c8c65cf374e919f85c4f18f4525c9 (patch) | |
| tree | b0285a567e632ee7a262cdb94389bf9f96d6f924 /gnu | |
| parent | c92483bd6309efcc0a20cdb574df00b65da0362b (diff) | |
| download | guix-deee5ddaf42c8c65cf374e919f85c4f18f4525c9.tar guix-deee5ddaf42c8c65cf374e919f85c4f18f4525c9.tar.gz | |
gnu: python-rpy2: Update to 2.9.0.
* gnu/packages/python.scm (python-rpy2): Update to 2.9.0.
[arguments]: Run tests before install phase; add build phase "fix-tests".
[propagated-inputs]: Add python-jinja2 and python-pytz.
[inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/python.scm | 43 |
1 files changed, 33 insertions, 10 deletions
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index e330eb6008..21f8029940 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -4396,33 +4396,56 @@ operators such as union, intersection, and difference.") (define-public python-rpy2 (package (name "python-rpy2") - (version "2.7.6") + (version "2.9.0") (source (origin (method url-fetch) (uri (pypi-uri "rpy2" version)) (sha256 (base32 - "0nhan2qvrw7b7gg5zddwa22kybdv3x1g26vkd7q8lvnkgzrs4dga")))) + "0bqihjrdqwj5r1h86shvfb1p5hfr4a6klv1v54bzfr9r144w3rni")))) (build-system python-build-system) (arguments - '(#:phases + '(#:modules ((ice-9 ftw) + (srfi srfi-1) + (srfi srfi-26) + (guix build utils) + (guix build python-build-system)) + #:phases (modify-phases %standard-phases - (delete 'check) - (add-after 'install 'check + ;; Without this phase the test loader cannot find the directories, in + ;; which it is supposed to look for test files. + (add-after 'unpack 'fix-tests + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "rpy/tests.py" + (("loader.discover\\(") + "loader.discover(rpy_root + '/' +")) + #t)) + (replace 'check (lambda* (#:key outputs inputs #:allow-other-keys) - ;; It's easier to run tests after install. - ;; Make installed package available for running the tests - (add-installed-pythonpath inputs outputs) + (let ((cwd (getcwd))) + (setenv "PYTHONPATH" + (string-append cwd "/build/" + (find (cut string-prefix? "lib" <>) + (scandir (string-append cwd "/build"))) + ":" + (getenv "PYTHONPATH")))) (zero? (system* "python" "-m" "rpy2.tests" "-v"))))))) (propagated-inputs - `(("python-six" ,python-six))) + `(("python-six" ,python-six) + ("python-jinja2" ,python-jinja2) + ("python-pytz" ,python-pytz))) (inputs `(("readline" ,readline) ("icu4c" ,icu4c) ("pcre" ,pcre) ("r-minimal" ,r-minimal) - ("r-survival" ,r-survival))) + ("r-survival" ,r-survival) + ("r-ggplot2" ,r-ggplot2) + ("r-rsqlite" ,r-rsqlite) + ("r-dplyr" ,r-dplyr) + ("r-dbplyr" ,r-dbplyr) + ("python-numpy" ,python-numpy))) (native-inputs `(("zlib" ,zlib))) (home-page "http://rpy.sourceforge.net/") |