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authorEfraim Flashner <efraim@flashner.co.il>2016-03-30 22:45:35 +0300
committerEfraim Flashner <efraim@flashner.co.il>2016-03-30 22:45:35 +0300
commitddb8312911caa3e6d6039c098f544ab4296758b7 (patch)
tree407169c1bdc104937df8038ac2887b22d6a86811 /gnu
parent96e9f097ee1899cf9e41ce2756a684b0a2dc52f3 (diff)
downloadguix-ddb8312911caa3e6d6039c098f544ab4296758b7.tar
guix-ddb8312911caa3e6d6039c098f544ab4296758b7.tar.gz
gnu: python2-pbcore: Update to 1.2.8.
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8. [native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm15
1 files changed, 8 insertions, 7 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 887f6cc99b..250deb9b6b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4,6 +4,7 @@
;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -2507,16 +2508,13 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
(define-public python2-pbcore
(package
(name "python2-pbcore")
- (version "0.9.3")
+ (version "1.2.8")
(source (origin
(method url-fetch)
- (uri (string-append
- "https://github.com/PacificBiosciences/pbcore/archive/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (uri (pypi-uri "pbcore" version))
(sha256
(base32
- "1z46rwjac93jm87cbj2zgjg6qvsgs65140wkbbxsvxps7ai4pm09"))))
+ "02pfn5raa3zf739672bg0dkx7z3j2c4nx7vmpfjqy5b12jrqpymk"))))
(build-system python-build-system)
(arguments `(#:python ,python-2)) ; pbcore requires Python 2.7
(inputs
@@ -2525,7 +2523,10 @@ interrupted by stop codons. OrfM finds and prints these ORFs.")
("python-pysam" ,python2-pysam)
("python-h5py" ,python2-h5py)))
(native-inputs
- `(("python-setuptools" ,python2-setuptools)))
+ `(("python-docutils" ,python2-docutils)
+ ("python-nose" ,python2-nose)
+ ("python-setuptools" ,python2-setuptools)
+ ("python-sphinx" ,python2-sphinx)))
(home-page "http://pacificbiosciences.github.io/pbcore/")
(synopsis "Library for reading and writing PacBio data files")
(description