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authorBen Woodcroft <donttrustben@gmail.com>2016-07-12 16:02:45 +1000
committerBen Woodcroft <donttrustben@gmail.com>2016-08-08 22:08:17 +1000
commit159a70167883b0b4d5237b7ef3493b54356f362e (patch)
tree306f91ed567711fe92dc3e0f0f9b042336b8670a /gnu
parent8b5f4d57005569ee2f1b68a151f5ce8d50a1e17a (diff)
downloadguix-159a70167883b0b4d5237b7ef3493b54356f362e.tar
guix-159a70167883b0b4d5237b7ef3493b54356f362e.tar.gz
gnu: Add bpp-popgen.
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b8424aa34..78347331dc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -592,6 +592,39 @@ analysis, phylogenetics, molecular evolution and population genetics. This
library provides phylogenetics-related modules.")
(license license:cecill-c))))
+(define-public bpp-popgen
+ ;; The last release was in 2014 and the recommended way to install from source
+ ;; is to clone the git repository, so we do this.
+ ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
+ (let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f"))
+ (package
+ (name "bpp-popgen")
+ (version (string-append "2.2.0-1." (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "http://biopp.univ-montp2.fr/git/bpp-popgen")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:parallel-build? #f
+ #:tests? #f)) ; There are no tests.
+ (inputs
+ `(("bpp-core" ,bpp-core)
+ ("bpp-seq" ,bpp-seq)
+ ("gcc" ,gcc-5)))
+ (home-page "http://biopp.univ-montp2.fr")
+ (synopsis "Bio++ population genetics library")
+ (description
+ "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
+analysis, phylogenetics, molecular evolution and population genetics. This
+library provides population genetics-related modules.")
+ (license license:cecill-c))))
+
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.