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authorBen Woodcroft <donttrustben@gmail.com>2016-01-11 00:28:25 +1000
committerBen Woodcroft <donttrustben@gmail.com>2016-01-11 00:36:13 +1000
commit6573ac82ad83cacd264ae20f9266d21cb5852f12 (patch)
treeb53c9fcb56a99e03ac7748d531d840a7ffa5b55f /gnu
parent695bea9803b6ab12ba9fe8a55d663745c97cf55b (diff)
downloadguix-6573ac82ad83cacd264ae20f9266d21cb5852f12.tar
guix-6573ac82ad83cacd264ae20f9266d21cb5852f12.tar.gz
gnu: bedtools: Use modify-phases.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm38
1 files changed, 19 insertions, 19 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c5983274c3..df0e23da89 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -224,25 +224,25 @@ computational cluster.")
(arguments
'(#:test-target "test"
#:phases
- (alist-cons-after
- 'unpack 'patch-makefile-SHELL-definition
- (lambda _
- ;; patch-makefile-SHELL cannot be used here as it does not
- ;; yet patch definitions with `:='. Since changes to
- ;; patch-makefile-SHELL result in a full rebuild, features
- ;; of patch-makefile-SHELL are reimplemented here.
- (substitute* "Makefile"
- (("^SHELL := .*$") (string-append "SHELL := " (which "bash") " -e \n"))))
- (alist-delete
- 'configure
- (alist-replace
- 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
- (for-each (lambda (file)
- (install-file file bin))
- (find-files "bin" ".*"))))
- %standard-phases)))))
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-makefile-SHELL-definition
+ (lambda _
+ ;; patch-makefile-SHELL cannot be used here as it does not
+ ;; yet patch definitions with `:='. Since changes to
+ ;; patch-makefile-SHELL result in a full rebuild, features
+ ;; of patch-makefile-SHELL are reimplemented here.
+ (substitute* "Makefile"
+ (("^SHELL := .*$")
+ (string-append "SHELL := " (which "bash") " -e \n")))
+ #t))
+ (delete 'configure)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
+ (for-each (lambda (file)
+ (install-file file bin))
+ (find-files "bin" ".*")))
+ #t)))))
(home-page "https://github.com/arq5x/bedtools2")
(synopsis "Tools for genome analysis and arithmetic")
(description